View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4670_low_1 (Length: 369)

Name: NF4670_low_1
Description: NF4670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4670_low_1
NF4670_low_1
[»] chr8 (2 HSPs)
chr8 (10-353)||(11402747-11403091)
chr8 (33-103)||(11402306-11402376)
[»] chr5 (5 HSPs)
chr5 (40-245)||(35841855-35842060)
chr5 (40-245)||(12528962-12529167)
chr5 (251-326)||(12528861-12528936)
chr5 (251-326)||(35842086-35842161)
chr5 (251-337)||(12643795-12643881)
[»] chr2 (4 HSPs)
chr2 (40-245)||(42913075-42913280)
chr2 (33-245)||(42300721-42300933)
chr2 (251-326)||(42300959-42301034)
chr2 (251-326)||(42912974-42913049)
[»] chr1 (2 HSPs)
chr1 (40-245)||(29282216-29282421)
chr1 (251-326)||(29282115-29282190)
[»] chr4 (5 HSPs)
chr4 (40-245)||(27730175-27730380)
chr4 (40-245)||(45966142-45966347)
chr4 (40-319)||(24146874-24147164)
chr4 (251-326)||(27730074-27730149)
chr4 (251-326)||(45966373-45966448)
[»] chr6 (2 HSPs)
chr6 (40-245)||(29303875-29304080)
chr6 (251-326)||(29304106-29304181)


Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 10 - 353
Target Start/End: Complemental strand, 11403091 - 11402747
Alignment:
Q  10 gcaaaggatgtatcgaaagtcat-tcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgc 108  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11403091 gcaaaggatgtatcgaaagtcatgtcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgc 11402992  T
Q  109 tgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaaga 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402991 tgaatccggttagaagggagagagtaaaggtcgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaaga 11402892  T
Q  209 ggatgtggaaacttcgatcaatggagagacaataatttcaagaggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttac 308  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11402891 ggacgtggaaacttcgatcaatggagagacaataatttcaagaggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttac 11402792  T
Q  309 aaacaagagagaccaaattacagttgttttcaccgttgaaatttt 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  11402791 aaacaagagagaccaaattacagttgttttcaccgttgaaatttt 11402747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 11402306 - 11402376
Alignment:
Q  33 tcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataac 103  Q
    |||||| ||||||| ||||||| || |||| ||||||||||||| ||||||| || |||||| ||||||||    
T  11402306 tcaacagaatattgcagaagacagagaaagcaaaggaggaagccttgaaaagtcaagtgaacttcaataac 11402376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 35841855 - 35842060
Alignment:
Q  40 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 139  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |    
T  35841855 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagct 35841954  T
Q  140 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 239  Q
    ||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  35841955 cgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 35842054  T
Q  240 ataatt 245  Q
    | ||||    
T  35842055 acaatt 35842060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 12529167 - 12528962
Alignment:
Q  40 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 139  Q
    |||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||  | | |  |    
T  12529167 aatattggagaatactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaaggcagaact 12529068  T
Q  140 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 239  Q
    ||||| |||||||||||||||||||||  ||  || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  12529067 cgtgacaatttcaacaatggaggaagaggaagtttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 12528968  T
Q  240 ataatt 245  Q
    | ||||    
T  12528967 acaatt 12528962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 12528936 - 12528861
Alignment:
Q  251 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 326  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| |||||    
T  12528936 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaat 12528861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 35842086 - 35842161
Alignment:
Q  251 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 326  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| |||||    
T  35842086 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttgttacaaccaagagagaacaaat 35842161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 337
Target Start/End: Original strand, 12643795 - 12643881
Alignment:
Q  251 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaattacagttgttt 337  Q
    ||||||||||||| |||||||| ||| |||||| | || || || || ||| | |||||| ||||||||| ||||||| ||||||||    
T  12643795 aggaagaggtggagacaattttagttataccaatcatgacaaaggaaaaggatattacaaccaagagagaacaaattatagttgttt 12643881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 42913280 - 42913075
Alignment:
Q  40 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 139  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |    
T  42913280 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagct 42913181  T
Q  140 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 239  Q
    ||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  42913180 cgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 42913081  T
Q  240 ataatt 245  Q
    | ||||    
T  42913080 acaatt 42913075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 33 - 245
Target Start/End: Original strand, 42300721 - 42300933
Alignment:
Q  33 tcaacaaaatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagag 132  Q
    |||||| |||||||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||| ||| ||| ||||||| || ||| ||| ||       
T  42300721 tcaacagaatattggagaagagtgaaaatgtaaaggaggaagccttgaagagccaggtgaacctcaacaacattgttgaatccagtcagatgggtgaagc 42300820  T
Q  133 taaaggtcgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatgg 232  Q
     | || |||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | ||||||    
T  42300821 cagagctcgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatgg 42300920  T
Q  233 agagacaataatt 245  Q
    |||||||| ||||    
T  42300921 agagacaacaatt 42300933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 42300959 - 42301034
Alignment:
Q  251 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 326  Q
    ||||||||||||||||||||||||||| |  | ||||||||||| |||||||| |||||| ||||||||| |||||    
T  42300959 aggaagaggtggaaacaattttggttccaatagccgtggcagaggaagaggttattacaaccaagagagaacaaat 42301034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 42913049 - 42912974
Alignment:
Q  251 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 326  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| |||||    
T  42913049 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaat 42912974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 29282421 - 29282216
Alignment:
Q  40 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 139  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |    
T  29282421 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagct 29282322  T
Q  140 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 239  Q
    ||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  29282321 cgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 29282222  T
Q  240 ataatt 245  Q
    | ||||    
T  29282221 acaatt 29282216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 29282190 - 29282115
Alignment:
Q  251 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 326  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| |||||    
T  29282190 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaat 29282115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 8e-46; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 27730380 - 27730175
Alignment:
Q  40 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 139  Q
    ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | || |    
T  27730380 aatattggaaaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagagct 27730281  T
Q  140 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 239  Q
    ||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  27730280 cgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 27730181  T
Q  240 ataatt 245  Q
    | ||||    
T  27730180 acaatt 27730175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 45966142 - 45966347
Alignment:
Q  40 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 139  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||    | |  |    
T  45966142 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagccagaact 45966241  T
Q  140 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 239  Q
    ||||| |||||||||||||||||||||  ||| || ||||| |||||| ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  45966242 cgtgacaatttcaacaatggaggaagaggaaatttcagaggaagaggtcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 45966341  T
Q  240 ataatt 245  Q
    | ||||    
T  45966342 acaatt 45966347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 40 - 319
Target Start/End: Original strand, 24146874 - 24147164
Alignment:
Q  40 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 139  Q
    ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| ||||| ||| ||| | |||||  ||||| ||| ||    | ||      
T  24146874 aatattggataagactgaaaaagtaaaggaggaagccttgaagagccaggtgaagctcaacaacattgtttaatccaattagatgggtgaagccagagaa 24146973  T
Q  140 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 239  Q
     |||| |||||||||| ||||  ||||  ||| || |||| || |||| ||||||| ||||||||||||||| |||| |||||| | |||||||||||||    
T  24146974 tgtgacaatttcaacattggattaagaggaaatttcagagttaaaggtcgaggaacctttagaggaagaggacgtggcaacttcaaccaatggagagaca 24147073  T
Q  240 ataatttcaag-----------aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagag 319  Q
    | ||||||||            |||||||||||||||||||||||| || | |||||||||||||| |||||||| |||||| ||||||||    
T  24147074 acaatttcaatccatcccatcaaggaagaggtggaaacaattttggctccaacaaccgtggcagaggaagaggttattacaaccaagagag 24147164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 326
Target Start/End: Complemental strand, 27730149 - 27730074
Alignment:
Q  251 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 326  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| |||||    
T  27730149 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaat 27730074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 45966373 - 45966448
Alignment:
Q  251 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 326  Q
    ||||| |||||||||||| |||||||| |  ||||||||||||| |||||||| |||||| ||||||||| |||||    
T  45966373 aggaaaaggtggaaacaactttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaat 45966448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 29303875 - 29304080
Alignment:
Q  40 aatattggagaagactgaaaaagtaaaggaggaagccatgaaaagccaggtgaacctcaataacgttgctgaatccggttagaagggagagagtaaaggt 139  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| || ||| ||| ||   || |  |    
T  29303875 aatattggagaagactgaaaaagtaaaggaggaagccttgaagagccaggtgaacctcaacaacgttgctgaatccagtcagatgggtgaagctagaact 29303974  T
Q  140 cgtgataatttcaacaatggaggaagaaaaaactttagaggtagaggttgaggaacttttagaggaagaggatgtggaaacttcgatcaatggagagaca 239  Q
    ||||| |||||||||||||||||||||  ||  || ||||| |||| | ||||||  ||||||||||||||| |||| |||||| | |||||||||||||    
T  29303975 cgtgacaatttcaacaatggaggaagaggaagtttcagaggaagagatcgaggaagctttagaggaagaggacgtggcaacttcaaccaatggagagaca 29304074  T
Q  240 ataatt 245  Q
    | ||||    
T  29304075 acaatt 29304080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 326
Target Start/End: Original strand, 29304106 - 29304181
Alignment:
Q  251 aggaagaggtggaaacaattttggttctaccaaccgtggcagagaaagaggttcttacaaacaagagagaccaaat 326  Q
    ||||| ||||||||||||||||||||| |  ||||||||||||| |||||||| |||||| ||||||||| |||||    
T  29304106 aggaaaaggtggaaacaattttggttccaataaccgtggcagaggaagaggttattacaaccaagagagaacaaat 29304181  T

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