View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4670_low_2 (Length: 259)
Name: NF4670_low_2
Description: NF4670
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4670_low_2 |
 | |
|
| [»] chr6 (19 HSPs) |
| |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
| [»] scaffold0831 (1 HSPs) |
| | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 19)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 108 - 259
Target Start/End: Original strand, 29136409 - 29136560
Alignment:
| Q |
108 |
ttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatactcatttcatgaacatattccacaacaatttct |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||| | |
|
|
| T |
29136409 |
ttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatactcgtttcatgaacatgttccgcaacaatttgt |
29136508 |
T |
|
| Q |
208 |
tatcatctaattcttgttccgatgacggatcatctttactcctaaaggttac |
259 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
29136509 |
tatcatctaattctctttctgatgatggatcatctctactcctaaaggttac |
29136560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 69 - 222
Target Start/End: Original strand, 29123220 - 29123373
Alignment:
| Q |
69 |
tatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttg |
168 |
Q |
| |
|
|||||| ||||||||||||| || |||||||||||||| ||||||||||||||||| || || |||||| |||| ||||||||||||||||||| | || |
|
|
| T |
29123220 |
tatatatctgatgatattgccttctccattctatcaaaattgcctcttaaatcttttaaacgagttgaatccgttcgcaaatcatggtctctcttgtctg |
29123319 |
T |
|
| Q |
169 |
aaaatactcatttcatgaacatattccacaacaatttcttatcatctaattctt |
222 |
Q |
| |
|
|| ||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
29123320 |
aagatactcatttcatgaacatgttccgcaacaatttcttatcatctaattctt |
29123373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 214
Target Start/End: Complemental strand, 32745844 - 32745699
Alignment:
| Q |
69 |
tatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttg |
168 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||||| | |||||||||||||| || || ||||||||||| ||||||||||||||||||||| || |
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|
| T |
32745844 |
tatatacctgatgatattgccttctccatcctatcaaaactacctcttaaatcttttaaacgatttgaatgcgttcgcaaatcatggtctctcttatctg |
32745745 |
T |
|
| Q |
169 |
aaaatactcatttcatgaacatattccacaacaatttcttatcatc |
214 |
Q |
| |
|
|||||||||||||||||||||| || | |||||||||||||||||| |
|
|
| T |
32745744 |
aaaatactcatttcatgaacatgtttcgcaacaatttcttatcatc |
32745699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 69 - 211
Target Start/End: Original strand, 29144360 - 29144502
Alignment:
| Q |
69 |
tatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttg |
168 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| || ||||||||||||||||| ||||| ||| ||||||| | ||||| |||| ||||||||||| |
|
|
| T |
29144360 |
tatatactcgatgatattgccttatccattctatcgaaattgcctcttaaatctttgaagcgatttggatgcgttcgtaaatcttggtatctcttatttg |
29144459 |
T |
|
| Q |
169 |
aaaatactcatttcatgaacatattccacaacaatttcttatc |
211 |
Q |
| |
|
|| ||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
29144460 |
aagatactcatttcatgaacatgttccgcaacaatttcttatc |
29144502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 29299150 - 29299247
Alignment:
| Q |
76 |
ctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaat |
173 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||| ||||||||||||||||||| ||||||||| |
|
|
| T |
29299150 |
ctgatgatatagctttttccattctctcaaagttgcctcttaaatcttttaagcgttttgaatgtgttcgcaaatcatggtctctcttgtttgaaaat |
29299247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 76 - 211
Target Start/End: Complemental strand, 29153058 - 29152923
Alignment:
| Q |
76 |
ctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatac |
175 |
Q |
| |
|
||||||||||||| || |||||||| ||||| |||||||||||||||||||||| | ||||||| ||| ||||||||||||| ||| ||| |||||| |
|
|
| T |
29153058 |
ctgatgatattgccttctccattctctcaaaattgcctcttaaatctttcaagcattttgaatgtgttcgcaaatcatggtccctcctatctgaaaaaca |
29152959 |
T |
|
| Q |
176 |
tcatttcatgaacatattccacaacaatttcttatc |
211 |
Q |
| |
|
||| ||||||||||| |||| ||| ||||||||||| |
|
|
| T |
29152958 |
tcacttcatgaacatgttccgcaataatttcttatc |
29152923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 211
Target Start/End: Original strand, 29130393 - 29130535
Alignment:
| Q |
69 |
tatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttg |
168 |
Q |
| |
|
||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||| |||||| |||| | ||||||||||||||||| | || |
|
|
| T |
29130393 |
tatatacctcatgatattcacttctccattctctcaaagttgcctcttaaatctttcaagcgatttgaatccgttcgtaaatcatggtctctcttgtatg |
29130492 |
T |
|
| Q |
169 |
aaaatactcatttcatgaacatattccacaacaatttcttatc |
211 |
Q |
| |
|
|||||| | ||||||||||| |||||||||| | ||||||| |
|
|
| T |
29130493 |
aaaatagtttgttcatgaacatgttccacaacagtctcttatc |
29130535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 34279500 - 34279370
Alignment:
| Q |
69 |
tatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttg |
168 |
Q |
| |
|
|||||| ||||||||||||| || |||||||| ||||| || |||||||||||||||||| || ||||||| ||||| |||||||||| ||| |||| || |
|
|
| T |
34279500 |
tatatatctgatgatattgccttctccattctttcaaaattacctcttaaatctttcaagagttttgaatgtgtttgtaaatcatggtatcttttatctg |
34279401 |
T |
|
| Q |
169 |
aaaatactcatttcatgaacatattccacaa |
199 |
Q |
| |
|
||||| ||| ||||||||||| |||||||| |
|
|
| T |
34279400 |
aaaatcatcacttcatgaacatgttccacaa |
34279370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 96 - 172
Target Start/End: Complemental strand, 32973591 - 32973515
Alignment:
| Q |
96 |
attctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaa |
172 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |||||| |
|
|
| T |
32973591 |
attctatcaaaattgcctcttaaatctttcaagcgttttgaatgtgtttgtaaatcatggtctctcttatctgaaaa |
32973515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 23216933 - 23216815
Alignment:
| Q |
93 |
tccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatactcatttcatgaacatat |
192 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||| | ||||||| ||| |||||||||||||||||||| |||| ||| |||||||||||||||| | |
|
|
| T |
23216933 |
tccattctatcgaagttacctcttaaatctttgaagagatttgaatgtgttcgcaaatcatggtctctcttaattgataattctcatttcatgaacatgt |
23216834 |
T |
|
| Q |
193 |
tccacaacaatttcttatc |
211 |
Q |
| |
|
| | ||| || |||||||| |
|
|
| T |
23216833 |
ttcgcaataacttcttatc |
23216815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 190
Target Start/End: Complemental strand, 21379401 - 21379307
Alignment:
| Q |
96 |
attctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatactcatttcatgaacat |
190 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||| ||| |||||| | |||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
21379401 |
attctatcgaagttacctcttaaatctttgaagcgatttggatgcgtccgtaaatcatggtctctcttatttgaaaacacttatttcatgaacat |
21379307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 210
Target Start/End: Complemental strand, 29149844 - 29149712
Alignment:
| Q |
78 |
gatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatactc |
177 |
Q |
| |
|
|||||||| || || |||||||| ||||| ||||||||||||||||| || | ||||||||||| ||||||||||||||||||| | ||| |||| || |
|
|
| T |
29149844 |
gatgatatagccttctccattctctcaaaattgcctcttaaatcttttaactgatttgaatgcgttcgcaaatcatggtctctcttgtctgagaataatc |
29149745 |
T |
|
| Q |
178 |
atttcatgaacatattccacaacaatttcttat |
210 |
Q |
| |
|
| ||||||| ||| || | | |||||||||||| |
|
|
| T |
29149744 |
acttcatgagcatgtttcgccacaatttcttat |
29149712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 211
Target Start/End: Complemental strand, 34259241 - 34259099
Alignment:
| Q |
69 |
tatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttg |
168 |
Q |
| |
|
||||||||| |||||||||| || || |||||| || | |||||||| ||||| ||||| ||| ||||||| | |||||||||||||||||||| |
|
|
| T |
34259241 |
tatatacctcatgatattgccttctctattctacacaaactacctcttaagtctttaaagcgatttggatgcgttcgtaaatcatggtctctcttattac |
34259142 |
T |
|
| Q |
169 |
aaaatactcatttcatgaacatattccacaacaatttcttatc |
211 |
Q |
| |
|
|| | |||| |||||||||||| |||| |||||||||| |||| |
|
|
| T |
34259141 |
aagacactcgtttcatgaacatgttccgcaacaatttcatatc |
34259099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 190
Target Start/End: Original strand, 29012044 - 29012089
Alignment:
| Q |
145 |
gcaaatcatggtctctcttatttgaaaatactcatttcatgaacat |
190 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29012044 |
gcaaatcatggtctctcttgtttgaaaatactcatttcatgaacat |
29012089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 34281046 - 34281127
Alignment:
| Q |
76 |
ctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtc |
157 |
Q |
| |
|
||||||||||||| || || ||||| ||||| |||||||||||||||||||||||| |||| || || ||||||||||||| |
|
|
| T |
34281046 |
ctgatgatattgccttctctattctctcaaaattgcctcttaaatctttcaagcgttttgagtgtcttcgcaaatcatggtc |
34281127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 25320291 - 25320190
Alignment:
| Q |
68 |
ttatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttattt |
167 |
Q |
| |
|
||||||| | |||||||| || |||| ||||||||||||||||| ||||||||||| ||||| || |||| || | ||||||||||| ||||||||| |
|
|
| T |
25320291 |
ttatatatcagatgatatagccgtttcaattctatcaaagttgccgcttaaatcttttaagcgatttcaatgtattcgaaaatcatggtccctcttattt |
25320192 |
T |
|
| Q |
168 |
ga |
169 |
Q |
| |
|
|| |
|
|
| T |
25320191 |
ga |
25320190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 26149984 - 26149883
Alignment:
| Q |
68 |
ttatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttattt |
167 |
Q |
| |
|
||||||| | |||||||| || |||| ||||||||||||||||| ||||||||||| ||||| || |||| || | ||||||||||| ||||||||| |
|
|
| T |
26149984 |
ttatatatcagatgatatagccgtttcaattctatcaaagttgccgcttaaatcttttaagcgatttcaatgtattcgaaaatcatggtccctcttattt |
26149885 |
T |
|
| Q |
168 |
ga |
169 |
Q |
| |
|
|| |
|
|
| T |
26149884 |
ga |
26149883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 32958466 - 32958423
Alignment:
| Q |
113 |
tcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggt |
156 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||||||||||||| |
|
|
| T |
32958466 |
tcttaaatctttcatgcgttttgaattcgtttgcaaatcatggt |
32958423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 190
Target Start/End: Complemental strand, 21375293 - 21375215
Alignment:
| Q |
112 |
ctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatactcatttcatgaacat |
190 |
Q |
| |
|
||||||||||||| ||| | ||| |||||| | ||||||||||| |||||||||||||| | | ||||||||||||| |
|
|
| T |
21375293 |
ctcttaaatctttgaagtgatttggatgcgtctataaatcatggtccctcttatttgaaaacatttatttcatgaacat |
21375215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 17237 - 17097
Alignment:
| Q |
71 |
tatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaa |
170 |
Q |
| |
|
||||||||| |||||| || |||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17237 |
tatacctgacgatattagcttatccattctatcaaagttgcctcttaaatctttgaagagatttgaatgcgtttgcaaatcatggtctctcttaattgat |
17138 |
T |
|
| Q |
171 |
aatactcatttcatgaacatattccacaacaatttcttatc |
211 |
Q |
| |
|
||| || |||||||||||| || | ||| ||||||||||| |
|
|
| T |
17137 |
aattcttatttcatgaacaagtttcgcaataatttcttatc |
17097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 9603544 - 9603448
Alignment:
| Q |
69 |
tatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttat |
165 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| || ||||||||||||||||| ||||| |||||||| |||| ||| ||||||||||||||| |
|
|
| T |
9603544 |
tatatacctgatgatattgccttctccattctatccaaattgcctcttaaatcttttaagcgatttgaatgcttttgtaaaccatggtctctcttat |
9603448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 69 - 211
Target Start/End: Complemental strand, 9594741 - 9594599
Alignment:
| Q |
69 |
tatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttg |
168 |
Q |
| |
|
|||||| ||||||||||| | || ||||||||||| || || ||| |||||||||| ||||| ||||||| ||| ||||| ||||||||||||||| || |
|
|
| T |
9594741 |
tatatagctgatgatatttccttctccattctatctaaattacctattaaatcttttaagcgatttgaatgtgttcgcaaagcatggtctctcttatgtg |
9594642 |
T |
|
| Q |
169 |
aaaatactcatttcatgaacatattccacaacaatttcttatc |
211 |
Q |
| |
|
|||| ||| ||||||||||| |||| ||||||| ||||||| |
|
|
| T |
9594641 |
aaaacgatcacttcatgaacatgttccgcaacaatctcttatc |
9594599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 9573444 - 9573548
Alignment:
| Q |
69 |
tatatacctgatgatatt-gctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttattt |
167 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||| || |||||| |||||||||| ||||| ||||||| ||| |||||||||||||||| ||| || |
|
|
| T |
9573444 |
tatatacctgatgatatttgccttctccattctatccaaattgcctattaaatcttttaagcgatttgaatgtgttcgcaaatcatggtctctgttaatt |
9573543 |
T |
|
| Q |
168 |
gaaaa |
172 |
Q |
| |
|
||||| |
|
|
| T |
9573544 |
gaaaa |
9573548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 54296043 - 54295949
Alignment:
| Q |
69 |
tatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctctt |
163 |
Q |
| |
|
|||||||||||||||||| | || |||||| ||||||| |||||||||||||||| || || ||||||||||| | | ||||||||||||||| |
|
|
| T |
54296043 |
tatatacctgatgatatttccttctccattttatcaaaactgcctcttaaatcttttaaacgatttgaatgcgttcgtagatcatggtctctctt |
54295949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 9568300 - 9568431
Alignment:
| Q |
71 |
tatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctc---tcttattt |
167 |
Q |
| |
|
|||| ||||||||||||| || || |||||||| || |||||| |||||||| | ||||| ||||||||||| | ||||||||||||| |||||| | |
|
|
| T |
9568300 |
tatatctgatgatattgccttctctattctatccaaattgccttttaaatctattaagcgatttgaatgcgttcgtaaatcatggtctctgatcttatct |
9568399 |
T |
|
| Q |
168 |
gaaaatactcatttcatgaacatattccacaa |
199 |
Q |
| |
|
||||| |||| ||||||||||| ||| |||| |
|
|
| T |
9568400 |
gaaaaccctcacttcatgaacatgttctacaa |
9568431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 9582945 - 9582815
Alignment:
| Q |
69 |
tatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttg |
168 |
Q |
| |
|
|||||||||||||| ||||| || || ||| |||| || |||||| ||||||| | || || |||||||| || ||||| ||||||||||||||| || |
|
|
| T |
9582945 |
tatatacctgatgaaattgccttctctattttatccaaattgccttttaaatccattaaacggtttgaatgcattcgcaaagcatggtctctcttatctg |
9582846 |
T |
|
| Q |
169 |
aaaatactcatttcatgaacatattccacaa |
199 |
Q |
| |
|
|||| |||| ||||||||||| ||| |||| |
|
|
| T |
9582845 |
aaaaccctcacttcatgaacatgttctacaa |
9582815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 9588640 - 9588510
Alignment:
| Q |
69 |
tatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttg |
168 |
Q |
| |
|
|||||||||||||| ||||| || || ||| |||| || |||||| ||||||| | || || |||||||| || ||||| ||||||||||||||| || |
|
|
| T |
9588640 |
tatatacctgatgaaattgccttctctattttatccaaattgccttttaaatccattaaacggtttgaatgcattcgcaaagcatggtctctcttatctg |
9588541 |
T |
|
| Q |
169 |
aaaatactcatttcatgaacatattccacaa |
199 |
Q |
| |
|
|||| |||| ||||||||||| ||| |||| |
|
|
| T |
9588540 |
aaaaccctcacttcatgaacatgttctacaa |
9588510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 211
Target Start/End: Complemental strand, 27174456 - 27174314
Alignment:
| Q |
69 |
tatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttg |
168 |
Q |
| |
|
||||||| |||||||||| | || || | ||||||||| || ||||| |||||||| ||||| ||| |||||| |||||||||| || || ||||||| |
|
|
| T |
27174456 |
tatatacatgatgatattaccttctcaaatctatcaaaattacctctgaaatctttgaagcgatttggatgcgtacgcaaatcatgatcacttttatttg |
27174357 |
T |
|
| Q |
169 |
aaaatactcatttcatgaacatattccacaacaatttcttatc |
211 |
Q |
| |
|
||||| ||| |||||||||||| ||| |||||||||||||| |
|
|
| T |
27174356 |
aaaatcctcttttcatgaacatggtccgtaacaatttcttatc |
27174314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 169
Target Start/End: Original strand, 42777087 - 42777187
Alignment:
| Q |
69 |
tatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttg |
168 |
Q |
| |
|
||||||| ||||||||||||||| || ||||| ||||| || ||| ||||||| ||| || ||||||| || ||||||||||||||||||||||||| |
|
|
| T |
42777087 |
tatatacatgatgatattgctttctctattctctcaaaattacctattaaatcaaccaaacgatttgaatgtgtgtgcaaatcatggtctctcttatttg |
42777186 |
T |
|
| Q |
169 |
a |
169 |
Q |
| |
|
| |
|
|
| T |
42777187 |
a |
42777187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 42782260 - 42782381
Alignment:
| Q |
69 |
tatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttg |
168 |
Q |
| |
|
||||||| |||||||||| | || || ||||||||||| || || |||||||||| ||||| ||| |||||| | ||||||||||| || |||||| |
|
|
| T |
42782260 |
tatatacatgatgatattaccttctcaattctatcaaaattaccgattaaatctttgaagcgatttggatgcgtacgtaaatcatggtcacttctatttg |
42782359 |
T |
|
| Q |
169 |
aaaatactcatttcatgaacat |
190 |
Q |
| |
|
||||| || |||||||||||| |
|
|
| T |
42782360 |
aaaatccttttttcatgaacat |
42782381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 40548366 - 40548447
Alignment:
| Q |
78 |
gatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctc |
159 |
Q |
| |
|
||||||||||| ||||||||||||| ||| | ||| |||||||||| ||||| |||||||| | | ||||||||||||| |
|
|
| T |
40548366 |
gatgatattgccttttccattctataaaaacttcctgttaaatctttgaagcgatttgaatgcataagtaaatcatggtctc |
40548447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 41227002 - 41227123
Alignment:
| Q |
69 |
tatatacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttg |
168 |
Q |
| |
|
||||||| |||||||||| | || || ||||||||||| || || |||||||||| ||||| || |||| | || ||||||||||| || |||||| |
|
|
| T |
41227002 |
tatatacatgatgatattaccttctcaattctatcaaaattaccgattaaatctttaaagcgatttcgatgcatatgtaaatcatggtcccttctatttg |
41227101 |
T |
|
| Q |
169 |
aaaatactcatttcatgaacat |
190 |
Q |
| |
|
||||| || |||||||||||| |
|
|
| T |
41227102 |
aaaatccttttttcatgaacat |
41227123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 210
Target Start/End: Original strand, 37512003 - 37512135
Alignment:
| Q |
78 |
gatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatactc |
177 |
Q |
| |
|
||||| ||||| || |||||| ||||||| ||||||| |||||||| || || |||||| || |||||||||||||||| || ||||||| ||| |
|
|
| T |
37512003 |
gatgacattgccttctccattttatcaaaactgcctctcaaatctttgaaacgatttgaatatgtatgcaaatcatggtctcaattgcttgaaaaccctc |
37512102 |
T |
|
| Q |
178 |
atttcatgaacatattccacaacaatttcttat |
210 |
Q |
| |
|
| || |||| ||| ||| |||||||||||||| |
|
|
| T |
37512103 |
aatttatgagcatgttcagcaacaatttcttat |
37512135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 42445424 - 42445526
Alignment:
| Q |
93 |
tccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatactcatttcatgaacatat |
192 |
Q |
| |
|
|||||| ||||||| || |||||||||||||| ||||| ||||||| ||| | |||| ||||||||||||| |||||| ||||||||||||||| | |
|
|
| T |
42445424 |
tccattatatcaaaattacctcttaaatcttttaagcgatttgaatgtgttcgtaaattgtggtctctcttatctgaaaaccatcatttcatgaacatgt |
42445523 |
T |
|
| Q |
193 |
tcc |
195 |
Q |
| |
|
||| |
|
|
| T |
42445524 |
tcc |
42445526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 211
Target Start/End: Original strand, 25627341 - 25627435
Alignment:
| Q |
117 |
aaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatactcatttcatgaacatattccacaacaatttcttatc |
211 |
Q |
| |
|
|||||||| |||||| || ||||||| |||||||||||||||||||||||||| || |||||||| ||| |||| ||| |||||| |||| |
|
|
| T |
25627341 |
aaatctttgaagcgttctggatgcgttaagaaatcatggtctctcttatttgaaaacccttctttcatgaccatgttccgcaataatttcatatc |
25627435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 190
Target Start/End: Complemental strand, 34492 - 34379
Alignment:
| Q |
77 |
tgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatact |
176 |
Q |
| |
|
||||||| |||| |||| |||||||||||| |||||||||||||||| || ||| || ||||| | ||||||||||||| ||||||||| ||| || |
|
|
| T |
34492 |
tgatgatcttgcatttttcattctatcaaaattgcctcttaaatcttcaaaacgttttagttgcgtacgtaaatcatggtctcacttatttgagaatcct |
34393 |
T |
|
| Q |
177 |
catttcatgaacat |
190 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
34392 |
aatttcataaacat |
34379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 7525065 - 7525013
Alignment:
| Q |
72 |
atacctgatgatattgctttttccattctatcaaagttgcctcttaaatcttt |
124 |
Q |
| |
|
|||||||| ||| |||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7525065 |
atacctgacgatgttgcattttccattctatcaaaattgcctcttaaatcttt |
7525013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 7436239 - 7436181
Alignment:
| Q |
72 |
atacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcg |
130 |
Q |
| |
|
|||||||||||| |||| | |||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
7436239 |
atacctgatgatgttgcaatctccattctatcaaatttgcctcttaaatctttgaagcg |
7436181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 186
Target Start/End: Complemental strand, 7499882 - 7499768
Alignment:
| Q |
72 |
atacctgatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaa |
171 |
Q |
| |
|
|||| |||||||||||| || |||| ||||||| ||||| | ||| |||| ||||| ||| ||||| || ||||||||| |||||||||||||| |
|
|
| T |
7499882 |
atacatgatgatattgcattgctcattgtatcaaaattgccggtaaaaactttgaagcggtttggttgcgtatgtaaatcatggactctcttatttgaag |
7499783 |
T |
|
| Q |
172 |
atactcatttcatga |
186 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
7499782 |
atactcattttatga |
7499768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 190
Target Start/End: Complemental strand, 51875646 - 51875534
Alignment:
| Q |
78 |
gatgatattgctttttccattctatcaaagttgcctcttaaatctttcaagcgtattgaatgcgtttgcaaatcatggtctctcttatttgaaaatactc |
177 |
Q |
| |
|
|||||||||| || || ||||||||||| | |||||| ||||||| ||||| ||| ||| || || ||||||||||| |||||||| |||||| ||| |
|
|
| T |
51875646 |
gatgatattgtcttctcgattctatcaaaactacctcttcaatctttaaagcgatttggatgtgtatgtaaatcatggtcactcttattcgaaaatcctc |
51875547 |
T |
|
| Q |
178 |
atttcatgaacat |
190 |
Q |
| |
|
|||||||||||| |
|
|
| T |
51875546 |
gtttcatgaacat |
51875534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 2169 - 2107
Alignment:
| Q |
144 |
tgcaaatcatggtctctcttatttgaaaatactcatttcatgaacatattccacaacaatttc |
206 |
Q |
| |
|
||||| ||||||||||| ||||||||| || ||||||||||||| || || | |||||||||| |
|
|
| T |
2169 |
tgcaagtcatggtctcttttatttgaagatcctcatttcatgaaaatgtttcgcaacaatttc |
2107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 38589 - 38630
Alignment:
| Q |
113 |
tcttaaatctttcaagcgtattgaatgcgtttgcaaatcatg |
154 |
Q |
| |
|
||||||||||||||||||| |||||| | ||||||||||||| |
|
|
| T |
38589 |
tcttaaatctttcaagcgttttgaatccatttgcaaatcatg |
38630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Complemental strand, 3368718 - 3368670
Alignment:
| Q |
147 |
aaatcatggtctctcttatttgaaaatactcatttcatgaacatattcc |
195 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |||| |||| |
|
|
| T |
3368718 |
aaatcatggtctctcttatttgaaaacccttatttcatggacatgttcc |
3368670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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