View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4671-Insertion-2 (Length: 545)
Name: NF4671-Insertion-2
Description: NF4671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4671-Insertion-2 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 38 - 545
Target Start/End: Complemental strand, 44692763 - 44692256
Alignment:
| Q |
38 |
aattccaaaataaattttgcaacaaaattagacttaggatcagatgcttaataacaagagcttgtatattacaagcatccctacatagtttttcgataca |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692763 |
aattccaaaataaattttgcaacaaaattagacttaggatcagatgcttaataacaagagcttgtatattacaagcatccctacatagtttttcgataca |
44692664 |
T |
|
| Q |
138 |
tgtaagacgtaccgtaaggaaaaaggtaggctttcttaaacacttattgacctcttttggagaataattaatgtaaattatgaacagaaactgagcatac |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44692663 |
tgtaagacgtaccgtaaggaaaaaggtaggctttcttaaacacttattgacctcttttggagaataattcatgtaaattatgaacagaaactgagcatac |
44692564 |
T |
|
| Q |
238 |
caagtttaactcatataaatataatagc----aatgttgtggggacatatatctcatggttttaaaataacttaccagcattgatttcattcatagccgt |
333 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
44692563 |
caagtttaactcatataaatataatagctatatatgttgtggggac----atctcatggttttaaaaaaacttaccagcattgatttcattcatggccgt |
44692468 |
T |
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| Q |
334 |
cttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagcctgttgagacgattcaaagttatataaa |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
44692467 |
cttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcggacatagcctgttgcgacgattcaaagttatataaa |
44692368 |
T |
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| Q |
434 |
tcctccgttcaccttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcaagttcttcttccacagcttttgcgatttcatttttct |
533 |
Q |
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| T |
44692367 |
tcctcagttcaccttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcacgttcttcttccacagcttttgcgatttcatttttct |
44692268 |
T |
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| Q |
534 |
gctcgaaagtat |
545 |
Q |
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|||| ||||||| |
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| T |
44692267 |
gctcaaaagtat |
44692256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 314 - 542
Target Start/End: Complemental strand, 44632315 - 44632091
Alignment:
| Q |
314 |
ttgatttcattcatagccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagcctgttgag |
413 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
44632315 |
ttgatttcattcatagcccgcttcacatgctcatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagcctgttgag |
44632216 |
T |
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| Q |
414 |
acgattcaaagttatataaatcctccgttcaccttatcaggaaatagtaaatactaattgtaa-aacaaaa--aagaaccttctcaagttcttcttccac |
510 |
Q |
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||||||||||| ||||| |||| |||||||||||| | |||||||||||||||| ||||||| || |||||||||||||||||||||||| |
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| T |
44632215 |
gttattcaaagttacataaaccctcagttcaccttatc-------aataaatactaattgtaataacaaaaataaaaaccttctcaagttcttcttccac |
44632123 |
T |
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| Q |
511 |
agcttttgcgatttcatttttctgctcgaaag |
542 |
Q |
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||||||||| ||||||||||||||||| |||| |
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| T |
44632122 |
agcttttgcaatttcatttttctgctcaaaag |
44632091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 306 - 545
Target Start/End: Complemental strand, 44653796 - 44653566
Alignment:
| Q |
306 |
taccagcattgatttcattcatagccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagc |
405 |
Q |
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|||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
44653796 |
tacctgcattgatttcattcatagcccgcttcacatggacatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagc |
44653697 |
T |
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| Q |
406 |
ctgttgagacgattcaaagttatataaatcctccgttcaccttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcaagttcttct |
505 |
Q |
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||||||||| |||||||||||| |||||||| | ||||||| |||| | |||||| || | || ||||||||||||||||||||||||||||| |
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| T |
44653696 |
ctgttgagatgattcaaagttacataaatccacagttcaccatatc-------aataaataatattcgt--aacaaaaaagaaccttctcaagttcttct |
44653606 |
T |
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| Q |
506 |
tccacagcttttgcgatttcatttttctgctcgaaagtat |
545 |
Q |
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| T |
44653605 |
tccacagcttttgcaatttcatttttctgctcaaaagtat |
44653566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 284 - 545
Target Start/End: Original strand, 44636542 - 44636802
Alignment:
| Q |
284 |
atctcatggttttaaaataacttaccagcattgatttcattcatagccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaattt |
383 |
Q |
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|||||||||| |||||| ||| |||| ||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
44636542 |
atctcatggtcttaaaaaaacataccggcattgatttcattcatagcccgtttcacatgctcgtctggctctatatcaacaatcagtgtttgaacaattt |
44636641 |
T |
|
| Q |
384 |
catatccataagcgggcatagcctgttgagacgattcaaagttatataaatcctccgttcaccttatcaggaaatagtaaatactaattgtaaaacaa-a |
482 |
Q |
| |
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|||| |||||||| | ||||||||||| ||||||| |||||||| |||||||||| ||||||||||||| |||| | |||| |||| ||||||| | |
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| T |
44636642 |
catagccataagctgacatagcctgttaagacgatccaaagttacataaatcctcagttcaccttatcaacaaat-gaaaattgtaat--aaaaacaaca |
44636738 |
T |
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| Q |
483 |
aaagaaccttctcaagttcttcttccacagcttttgcgatttca-tttttctgctcgaaagtat |
545 |
Q |
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| T |
44636739 |
aaaaaaccttctcaagttcttcttccacagcttttgcgatttcattttttctgctcaaaagtat |
44636802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 306 - 545
Target Start/End: Complemental strand, 44682804 - 44682575
Alignment:
| Q |
306 |
taccagcattgatttcattcatagccgtcttcacatgctgatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagcgggcatagc |
405 |
Q |
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|||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
44682804 |
tacctgcattgatttcattcatagcccgcttcacatggacatctggctctatatcagtaatcagtgtttgaacaatttcatatccataagctgacatagc |
44682705 |
T |
|
| Q |
406 |
ctgttgagacgattcaaagttatataaatcctccgttcaccttatcaggaaatagtaaatactaattgtaaaacaaaaaagaaccttctcaagttcttct |
505 |
Q |
| |
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||||||||| |||||||||||| |||||||| | ||||||| ||||| ||||| | || || ||||||||||||||||||||||||||||| |
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| T |
44682704 |
ctgttgagatgattcaaagttacataaatccacagttcaccatatcaataaataat--------atcgt--aacaaaaaagaaccttctcaagttcttct |
44682615 |
T |
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| Q |
506 |
tccacagcttttgcgatttcatttttctgctcgaaagtat |
545 |
Q |
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| T |
44682614 |
tccacagcttttgcaatttcatttttctgctcaaaagtat |
44682575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 44636412 - 44636496
Alignment:
| Q |
45 |
aaataaattttgcaacaaaattagacttaggatcagatgcttaataacaagagcttgtatattacaagcatccctacatagtttt |
129 |
Q |
| |
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|||||| |||||||||||||||||| ||||||||| || |||||||| ||| ||||||||||||||| ||||| ||||||||| |
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| T |
44636412 |
aaataatttttgcaacaaaattagatttaggatcaaatacttaataattagaacttgtatattacaagtatccccgcatagtttt |
44636496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 44654217 - 44654120
Alignment:
| Q |
84 |
cttaataacaagagcttgtatattacaagcatccctacatagtttttcgatacatgtaagacgtaccgtaaggaaaaaggtaggctttcttaaacactt |
182 |
Q |
| |
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|||||||| |||||||||||||||| |||||||| ||||| ||||| ||||||| | |||| ||||| ||||||| ||||||| |||| |||||||| |
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| T |
44654217 |
cttaataataagagcttgtatattaaaagcatcctctcatag-ttttcaatacatgcatgacgaaccgtgaggaaaagggtaggcattctcaaacactt |
44654120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 44683021 - 44682965
Alignment:
| Q |
61 |
aaaattagacttaggatcagatgcttaataacaagagcttgtatattacaagcatcc |
117 |
Q |
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|||| |||| ||| ||||| || |||||||| |||||||||||||||| |||||||| |
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| T |
44683021 |
aaaaatagatttacgatcaaatacttaataataagagcttgtatattaaaagcatcc |
44682965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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