View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4671_high_3 (Length: 251)

Name: NF4671_high_3
Description: NF4671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4671_high_3
NF4671_high_3
[»] chr7 (2 HSPs)
chr7 (1-196)||(24871394-24871589)
chr7 (115-195)||(34091546-34091626)
[»] chr3 (4 HSPs)
chr3 (113-195)||(40574386-40574468)
chr3 (213-244)||(11893686-11893717)
chr3 (151-195)||(31362353-31362397)
chr3 (69-113)||(33709919-33709963)
[»] chr8 (1 HSPs)
chr8 (113-195)||(12729353-12729435)
[»] chr2 (1 HSPs)
chr2 (136-195)||(14218981-14219040)
[»] chr5 (2 HSPs)
chr5 (136-194)||(9851538-9851596)
chr5 (135-192)||(26900465-26900522)
[»] scaffold0007 (1 HSPs)
scaffold0007 (136-195)||(217711-217770)
[»] chr1 (3 HSPs)
chr1 (213-244)||(20281387-20281418)
chr1 (113-194)||(42263502-42263583)
chr1 (122-195)||(52282095-52282168)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 24871589 - 24871394
Alignment:
Q  1 cacattaatatttatgtttgattcgtgcccatcagttataccaatcacatgtaaaagggtatatggtgaatctcctttaagatactatagaatccttgat 100  Q
    ||||||||  |||| ||||||||||| |||  ||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||  |||||    
T  24871589 cacattaacctttacgtttgattcgtccccgccagttatgccaatcacatgtaaaagggtatatggtgaatctccttcaagatagtatagaatttttgat 24871490  T
Q  101 gtgacttgcacatgtcaattcctctcctgcacttaagaaaagagagaattatttaatattattttcagcagaattttgactcacaataatgtgata 196  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  24871489 gtgacttgcacatgtcaattcctctcgtgcacttaagaaaagagagaatgatttaatattattttcggcagaattttgactcacaataatgtgata 24871394  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 195
Target Start/End: Original strand, 34091546 - 34091626
Alignment:
Q  115 tcaattcctctcctgcacttaagaaaagagagaattatttaatattattttcagcagaattttgactcacaataatgtgat 195  Q
    |||||| ||||| |||| |  ||||||||  |||| |||||||||||||||| || ||||||||||||| |||||||||||    
T  34091546 tcaatttctctcatgcattagagaaaagaatgaatgatttaatattattttcggcggaattttgactcataataatgtgat 34091626  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 40574386 - 40574468
Alignment:
Q  113 tgtcaattcctctcctgcacttaagaaaagagagaattatttaatattattttcagcagaattttgactcacaataatgtgat 195  Q
    |||||||| ||||| ||||||  |||||||| ||||| |||||||||||||||| ||||||||||||||||||| ||||||||    
T  40574386 tgtcaatttctctcgtgcactagagaaaagaaagaatgatttaatattattttcggcagaattttgactcacaagaatgtgat 40574468  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 244
Target Start/End: Original strand, 11893686 - 11893717
Alignment:
Q  213 tgcaatgagttctgagttcgttttctctgctc 244  Q
    ||||||||||||||||||||||||||||||||    
T  11893686 tgcaatgagttctgagttcgttttctctgctc 11893717  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 31362353 - 31362397
Alignment:
Q  151 atttaatattattttcagcagaattttgactcacaataatgtgat 195  Q
    ||||| ||||||||||  |||||||||||||||||| ||||||||    
T  31362353 atttagtattattttcgacagaattttgactcacaagaatgtgat 31362397  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 33709963 - 33709919
Alignment:
Q  69 aatctcctttaagatactatagaatccttgatgtgacttgcacat 113  Q
    |||| |||||| ||||| ||||||||||||| |||||||||||||    
T  33709963 aatcccctttaggatacgatagaatccttgacgtgacttgcacat 33709919  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 195
Target Start/End: Complemental strand, 12729435 - 12729353
Alignment:
Q  113 tgtcaattcctctcctgcacttaagaaaagagagaattatttaatattattttcagcagaattttgactcacaataatgtgat 195  Q
    |||||||| ||||| ||||||  |||||||| ||||||||||| ||| |||||| ||||||||||||| ||||| ||||||||    
T  12729435 tgtcaatttctctcgtgcactagagaaaagaaagaattatttagtataattttcggcagaattttgacacacaacaatgtgat 12729353  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 136 - 195
Target Start/End: Original strand, 14218981 - 14219040
Alignment:
Q  136 agaaaagagagaattatttaatattattttcagcagaattttgactcacaataatgtgat 195  Q
    |||||||| ||||| ||||| ||||||||| |||| ||||||||||||||||||||||||    
T  14218981 agaaaagaaagaatgatttagtattatttttagcataattttgactcacaataatgtgat 14219040  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 9851538 - 9851596
Alignment:
Q  136 agaaaagagagaattatttaatattattttcagcagaattttgactcacaataatgtga 194  Q
    |||||||| ||| | ||||| |||||||||  |||||||||||||||||||||||||||    
T  9851538 agaaaagaaagactgatttagtattatttttggcagaattttgactcacaataatgtga 9851596  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 26900522 - 26900465
Alignment:
Q  135 aagaaaagagagaattatttaatattattttcagcagaattttgactcacaataatgt 192  Q
    ||||||||| ||| | ||||| ||||||||||| || ||||||||||||||| |||||    
T  26900522 aagaaaagaaagactaatttagtattattttcaccaaaattttgactcacaagaatgt 26900465  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 217770 - 217711
Alignment:
Q  136 agaaaagagagaattatttaatattattttcagcagaattttgactcacaataatgtgat 195  Q
    |||||||| |||||||||||  ||||||||| |||||||| |||| ||||| ||||||||    
T  217770 agaaaagaaagaattatttagaattattttcggcagaattctgacacacaacaatgtgat 217711  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 244
Target Start/End: Original strand, 20281387 - 20281418
Alignment:
Q  213 tgcaatgagttctgagttcgttttctctgctc 244  Q
    ||||||||||||||||||||||||||||||||    
T  20281387 tgcaatgagttctgagttcgttttctctgctc 20281418  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 42263502 - 42263583
Alignment:
Q  113 tgtcaattcctctcctgcacttaagaaaagagagaattatttaatattattttcagcagaattttgactcacaataatgtga 194  Q
    |||| ||| ||||| ||||||  |||||||| ||||| || || |||||||||  |||| |||||||||||||| |||||||    
T  42263502 tgtcgatttctctcgtgcactagagaaaagaaagaatgatatagtattattttaggcagtattttgactcacaagaatgtga 42263583  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 52282095 - 52282168
Alignment:
Q  122 ctctcctgcacttaagaaaagagagaattatttaatattattttcagcagaattttgactcacaataatgtgat 195  Q
    ||||| ||||||  |||||||| ||||| |||||||||||||||||  |||||||  ||||| || ||||||||    
T  52282095 ctctcatgcactagagaaaagaaagaatgatttaatattattttcaatagaatttaaactcataaaaatgtgat 52282168  T

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