View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4671_low_2 (Length: 425)
Name: NF4671_low_2
Description: NF4671
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4671_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 63 - 396
Target Start/End: Complemental strand, 38165043 - 38164713
Alignment:
| Q |
63 |
catttggaggggtttaagaaaaaatacaagaaaaaacagggaacaacctgtaataataaacacgtttgacacgaaaggtcgataagcggtttaatctgta |
162 |
Q |
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| T |
38165043 |
catttgggggggtttaagaaaaaatacaagaaaaaacagggaacaacctgtaataa---acacgtttgacacgaaaggtcgataagcggtttaatctgta |
38164947 |
T |
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| Q |
163 |
tgctgtatttgtatatttgaattctattatgaggttgtctttttgttcaacgtgcggatcacatgccccatcctccataattacccttaatttagattac |
262 |
Q |
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| T |
38164946 |
tgctgtatttgtatatttgaattctattatgaggttgtctttttgttcaacgtgtggatcacatgccccatcctccataattacccttaatttagattac |
38164847 |
T |
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| Q |
263 |
atataataataattatatcatcacattattcattcattcacaaacttagatttcaattcagttgttgagattttagcctccctctttcaaagagggagac |
362 |
Q |
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| T |
38164846 |
atataataataattatatcatcacattattcattcattcacaaacttagatttcaattcagttgttgagattttagcctccctctttcaaagagggagac |
38164747 |
T |
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| Q |
363 |
ttaacacttcttttctcagatctcctcggttcgt |
396 |
Q |
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| T |
38164746 |
ttaacacttcttttctcagatctcctcggttcgt |
38164713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 38165088 - 38165059
Alignment:
| Q |
17 |
agatactataaaataagaggactaaagagc |
46 |
Q |
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| T |
38165088 |
agatactataaaataagaggactaaagagc |
38165059 |
T |
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