View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4672-Insertion-1 (Length: 750)
Name: NF4672-Insertion-1
Description: NF4672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4672-Insertion-1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 581; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 581; E-Value: 0
Query Start/End: Original strand, 65 - 750
Target Start/End: Complemental strand, 47542891 - 47542214
Alignment:
| Q |
65 |
ttcagttatgaggttgtagggaggcgtataatcttgggaagtacttggggctcctattcttggtaaagctccttgaagatatgattttacatgccttaat |
164 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47542891 |
ttcagttatgaggttttagggaggcgtataatcttgggaagtacttggg-ctcctattcttggtaaagctccttgaagatatgattttacatgccttaat |
47542793 |
T |
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| Q |
165 |
gatcaagtaaagactaaagtagcaagagattttaagacttctgcttcttttcttgagacttgcttgcaagagattccaaagattcaatgggactttgagg |
264 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47542792 |
gatcaagtaaagactaaagtagcaagagattttaagacttcagcttcttttcttgagacttgcttgcaagagattccaaagattcaatgggactttgagg |
47542693 |
T |
|
| Q |
265 |
atggtaaccgcgaattccccggttggttaggtttttcgttgtaagtggcctctcactccctttgtctgaatatcaattaaaataaatttgaaaatatgaa |
364 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47542692 |
atggtaaccacgaattccccggttggttaggtttttcgttgtaagtggcctc--acttcctttgtatgaatatcaattaaaataaatttgaaaatatgaa |
47542595 |
T |
|
| Q |
365 |
acaatctcttgaaggcgtaaggttgtgtggtttcgacgaaattcatgtggtaacatttagcatttctgttaaaaataaaagtaaaatattgacttcttgt |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47542594 |
acaatctcttgaaggcgtaaggttgtgtggtttcgacgaaaaccatgtggtaacatttagcatttctgttaaaaataaaagtaaaatattgacttcttgt |
47542495 |
T |
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| Q |
465 |
cagaaactagtgcaaaactagtttacaccttatagagtgcatgccaattttttcttcttaaaaatgaaaattagtaaaacagaaacatagacattatcaa |
564 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
47542494 |
cagaaactagtgcaaaactagtttacaccttatagagtgtatgccaattttttcttcttaaaaatgaaaattagtaaaacagaaa-acagacattatcaa |
47542396 |
T |
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| Q |
565 |
cttttgttaaacccttgcgaccattggaatcgaatgtctttctcacaaagcattgtttttctcccacaagtaccttttcctttaaccctttaattatann |
664 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47542395 |
cttttgttaaacccttgcgaccattggaatcgaatgtctttctcacaaagcattgtttttctcccacaagtaccttttcctttaaccctttaattatatt |
47542296 |
T |
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| Q |
665 |
nnnnnaatcgatcaagcgttgaagattagaggaagccagttaattaactttgtgtgtgacttactcaactcccaccatgttgcatt |
750 |
Q |
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| T |
47542295 |
tttttaatcgatcaagcgtt----attagatgaagccagttaattaactttgtgtgtgacttactcaactcccaccatgttgcatt |
47542214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 551 - 750
Target Start/End: Complemental strand, 47547975 - 47547783
Alignment:
| Q |
551 |
atagacattatcaacttttgttaaacccttgcgaccattggaatcgaatgtctttctcacaaagcattgtttttctcccacaagtaccttttcctttaac |
650 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |||| | |||||||| ||| |||||||||||||| |
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| T |
47547975 |
atagacattatcaacttttgttaaacctttgcggccattagaatcgaatgtctttctca---agcaatatttttctcgcacg----ccttttcctttaac |
47547883 |
T |
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| Q |
651 |
cctttaattatannnnnnnaatcgatcaagcgttgaagattagaggaagccagttaattaactttgtgtgtgacttactcaactcccaccatgttgcatt |
750 |
Q |
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| T |
47547882 |
cctttaattataactttttaattgatcaagcgttgaagattagaggaagccagtaaattaactttgtgtgtgacttactcaactcccaccatgttgcatt |
47547783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 39708605 - 39708660
Alignment:
| Q |
9 |
cggtgaatggtgaatgacattgaccccgcttattaaaatttctggatccgtccctg |
64 |
Q |
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| T |
39708605 |
cggtgaatggtgaatgacattgaccccgcttattaaaatttctggatccgtccctg |
39708660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 21306282 - 21306243
Alignment:
| Q |
26 |
cattgaccccgcttattaaaatttctggatccgtccctgt |
65 |
Q |
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| T |
21306282 |
cattgaccccgcttattgaaatttctggatccgtgcctgt |
21306243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 2809407 - 2809463
Alignment:
| Q |
8 |
acggtgaatggtgaatgacattgaccccgcttattaaaatttctggatccgtccctg |
64 |
Q |
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| T |
2809407 |
acggtgaatggtgaatgacattgaccccgctcattaaaatttctggattcgtccctg |
2809463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 19104474 - 19104513
Alignment:
| Q |
25 |
acattgaccccgcttattaaaatttctggatccgtccctg |
64 |
Q |
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| T |
19104474 |
acattgaccccgctgatcaaaatttctggatccgtccctg |
19104513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 23035176 - 23035139
Alignment:
| Q |
27 |
attgaccccgcttattaaaatttctggatccgtccctg |
64 |
Q |
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| T |
23035176 |
attgaccccacatattaaaatttctggatccgtccctg |
23035139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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