View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4672-Insertion-10 (Length: 237)
Name: NF4672-Insertion-10
Description: NF4672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4672-Insertion-10 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold1377 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 25614914 - 25614685
Alignment:
| Q |
8 |
ttatatgcacattaaactcatagataacacaagaaaaccacgcattgtactccaagataacacaacaaaatggatcatcaaaattaaaccaagataactc |
107 |
Q |
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| T |
25614914 |
ttatatgcacattaaactcatagataacacaagaaaaccacgcattgtactccaagataacacaacaaaatggatcatcaaaattaaaccaagacaactc |
25614815 |
T |
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| Q |
108 |
acaaataaaatttatataatttctagtggtataaaataccaactttccagacaatnnnnnnnnctaaaagtaaaagcatccaaacagaatttttatcaat |
207 |
Q |
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| T |
25614814 |
acaaataaaatttatataatttctagtagtataaaataccaactttccagacaatagagaaaactaaaagtaaaagcatccaaacagaatttttatcaat |
25614715 |
T |
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| Q |
208 |
ccacaattgcagtccaccctagaactcatt |
237 |
Q |
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| T |
25614714 |
ccacaattgcagtccaccctagaactcatt |
25614685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 172 - 237
Target Start/End: Complemental strand, 31262838 - 31262773
Alignment:
| Q |
172 |
taaaagtaaaagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaactcatt |
237 |
Q |
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| T |
31262838 |
taaaggtaaaagcatcgaaacagaatttttatcaatccacaattgcagtctaccctaaaattcatt |
31262773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1377 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1377
Description:
Target: scaffold1377; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 1090 - 1148
Alignment:
| Q |
173 |
aaaagtaaaagcatccaaacagaatttttatcaatccacaattgcagtccaccctagaa |
231 |
Q |
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| T |
1090 |
aaaaataaaagcatccaaaccgaattgttatcaatccacaattgtagtccatcctagaa |
1148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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