View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4672-Insertion-8 (Length: 104)
Name: NF4672-Insertion-8
Description: NF4672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4672-Insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 65; Significance: 4e-29; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-29
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 11001191 - 11001119
Alignment:
| Q |
12 |
gaacaacaacagccacggtaattaactgtcaagaaaatttaacatgtggaaatcaagttatcaaattcccttt |
84 |
Q |
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| T |
11001191 |
gaacaacaacagccacggtaattaattgtcaagaagatttaacatgtggaaatcaagttatcaaattcccttt |
11001119 |
T |
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Target: chr1; HSP #2
Raw Score: 63; E-Value: 6e-28
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 10995548 - 10995462
Alignment:
| Q |
12 |
gaacaacaacagccacggtaattaactgtcaagaaaatttaacatgtggaaatcaagttatcaaattccctttccaaataaaaaacc |
98 |
Q |
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| T |
10995548 |
gaacaacaatagccacggtaattaactgtcaagaagatttaacatgtggaaatcaagttatcaaatttcttttccatatcaaaaacc |
10995462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 9e-18
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 11024483 - 11024548
Alignment:
| Q |
38 |
tgtcaagaaaatttaacatgtggaaatcaagttatcaaattccctttccaaataaaaaaccgtcaa |
103 |
Q |
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| T |
11024483 |
tgtccagaagatttaacatgtggaaatcaagttatcaagttccctttccgaatcaaaaaccgtcaa |
11024548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 10928914 - 10928978
Alignment:
| Q |
34 |
taactgtcaagaaaatttaacatgtggaaatcaagttatcaaattccctttccaaataaaaaacc |
98 |
Q |
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| T |
10928914 |
taactgtccagaagatttaacatgtggaaatcaagttatcaaatttccttttcaaatcaaaaacc |
10928978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 6e-16
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 11039552 - 11039602
Alignment:
| Q |
48 |
atttaacatgtggaaatcaagttatcaaattccctttccaaataaaaaacc |
98 |
Q |
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| T |
11039552 |
atttaacatgtggaaatcaagttatcaaattccctttccatatcaaaaacc |
11039602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 10906422 - 10906472
Alignment:
| Q |
48 |
atttaacatgtggaaatcaagttatcaaattccctttccaaataaaaaacc |
98 |
Q |
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| T |
10906422 |
atttaacatgtggaaatcaagttattaaattccctttccatatcaaaaacc |
10906472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 10990034 - 10990087
Alignment:
| Q |
48 |
atttaacatgtggaaatcaagttat---caaattccctttccaaataaaaaacc |
98 |
Q |
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| T |
10990034 |
atttaagatgtggaaatcaagttattatcaaattccctttccatatcaaaaacc |
10990087 |
T |
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