View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4672_high_1 (Length: 545)
Name: NF4672_high_1
Description: NF4672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4672_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 13 - 526
Target Start/End: Original strand, 13825057 - 13825570
Alignment:
| Q |
13 |
aatatataagaaaccggggagaatatgggtttcacatcacatgtatcacaaattcatgaaactcctcccaaactaaaggaaaacgaaagatggtgtgtta |
112 |
Q |
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| T |
13825057 |
aatatataagaaaccggggagaatatgggtttcacatcacatgtatcacaaattcatggaactcctcccaaactaaaggaaaacgaaagatggtgtgtta |
13825156 |
T |
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| Q |
113 |
tcggtctcattttggtcatcctaacaaagaatatgtcaagtcgatgacataaaataagtgcttattgaaagacaatccaaatttttattccttgcttttg |
212 |
Q |
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| T |
13825157 |
tctgtctcattttggtcatcctaacaaagaatatgtcaagtcgatgacataaaataagttcttattgaaagacaatccaattttttattccttgcttttg |
13825256 |
T |
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| Q |
213 |
ttttcaacaaattatagtttttaagtacttatcaatagattaagttttggaaggagttaaagttttgcattgataataaacttacaattgaaaaacattg |
312 |
Q |
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| T |
13825257 |
ttttgaacaatttatagtttttaagtacttatcaatagattaagttttggaaggagttaaagttttgcattgataataaacttaaaattgaaaaacattg |
13825356 |
T |
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| Q |
313 |
ttttctgctaaatttgttaggcgaggacatgttcgccaaacaaatctacttattannnnnnnnnnnnataaaaattacatttggtgattgtttgctaggc |
412 |
Q |
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| T |
13825357 |
ttgtctgctaaatttgttaggcgaggccatgttcgccaaacaaatctacttattattttttttatatataaaaattacatttggtgatggtttgctaggc |
13825456 |
T |
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| Q |
413 |
aaggaacttgttcccctagctaacattgcaatgtcagcagttacatattttaaagatattgcagtatgcaggagacgtactacaaaccataaatttccga |
512 |
Q |
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| T |
13825457 |
aaggaacttgttcccctggcgaacattgcaatgtcagcagttacatattttaaagatattgcagtatgcaagagacgtagtacaaaccatgaatttccga |
13825556 |
T |
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| Q |
513 |
tttattcatgttaa |
526 |
Q |
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| T |
13825557 |
tttattcacgttaa |
13825570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 4078338 - 4078407
Alignment:
| Q |
248 |
tagattaagttttggaaggagttaaagttttgcattgataataaacttacaattgaaaaacattgttttct |
318 |
Q |
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| T |
4078338 |
tagattaagttttggaaggagtt-aagttttgcattgacaatgaaattgaagttgaaaaactatgttttct |
4078407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 318
Target Start/End: Original strand, 4101091 - 4101160
Alignment:
| Q |
248 |
tagattaagttttggaaggagttaaagttttgcattgataataaacttacaattgaaaaacattgttttct |
318 |
Q |
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| T |
4101091 |
tagattaagttttggaaggagtt-aagttttgcattgacaatgaaattgaagttgaaaaactatgttttct |
4101160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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