View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4672_high_10 (Length: 372)
Name: NF4672_high_10
Description: NF4672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4672_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 35535421 - 35535761
Alignment:
| Q |
17 |
atgaataagtaaaggagacagtggcagtagatagatttaatttaattatacataataagttcatagaagcacccacatcgaaagaattccctagaaactc |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35535421 |
atgaataagtaaaggagacagtagcagtagatagatttaatttaattatacataataagttcatagaagcacccacatcgaaagaattccctagaaactc |
35535520 |
T |
|
| Q |
117 |
tcgcaataaagctttcaagcaaccagcaattccatttttcaatgaaaactccattgatgaaagcatagccacatgacatccacgggatttcaggaaaatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |
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| T |
35535521 |
tcgcaataaagctttcaagcaaccagcaattccatttttcaacgaaaactccattgatgaaagcatagccacatgacatccatgggatttcaagaatatg |
35535620 |
T |
|
| Q |
217 |
ccaagctcctcaaatgtcattatgtcatcgacaaactctatgtttcctgccaatcatagttcaatctc--aattttatatagagatataaatggtttttc |
314 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
35535621 |
ccaagctcttcaaatgtcattatgtcatcaacaaactctatgtttcctgccaatcatagttcaatctcagaattttatatagagatataaatggcttttc |
35535720 |
T |
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| Q |
315 |
attcctcatactagagtacaataccaaaagatattgtactg |
355 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35535721 |
attcctcatactagagtgcaataccaaaagatattgtactg |
35535761 |
T |
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