View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4672_high_12 (Length: 322)
Name: NF4672_high_12
Description: NF4672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4672_high_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 16955573 - 16955894
Alignment:
| Q |
1 |
gacaaaggtgtgactgtagactgtagattgtggaaggattcagtttatagctgcaaactgcttacttttttcctagcnnnnnnnnnnnnnnnnnntaata |
100 |
Q |
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| T |
16955573 |
gacaaaggtgtgactgtagactgtagactgtggaaggattcagtttatagctgcaaactgcttacttttttcctagcaaaaaataaacaaaaaaataata |
16955672 |
T |
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| Q |
101 |
ttaaagatacacgaacatctactttttcacatccatccgacatttagttaatcacgtttgaaaataagatcattcaattgagtatatacttaattcgatt |
200 |
Q |
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| T |
16955673 |
ttaaagatacacgaacatctactttttcacatccatccgacatttagttaatcacgtttgaaaataagatcattcaattgagtatatacttaattcgatt |
16955772 |
T |
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| Q |
201 |
caatgtcaaaattgtgattatttcatatgtataagtacattttttaattgataaaactaaggttagaagaagatttttggtgaggataggagaatcatac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16955773 |
caatgtcaaaattgtgattatttcatatgtataagtacattttttaattgataaaactaaggttagaagaagatttttggtgaggaaaggagaatcatac |
16955872 |
T |
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| Q |
301 |
ggcaaaaagattagaaagaaac |
322 |
Q |
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|||||||||||||||||||||| |
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| T |
16955873 |
ggcaaaaagattagaaagaaac |
16955894 |
T |
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