View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4672_high_15 (Length: 300)
Name: NF4672_high_15
Description: NF4672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4672_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 7 - 290
Target Start/End: Original strand, 26603077 - 26603363
Alignment:
| Q |
7 |
agcaattcttcctccagcgacacaatagacagttatatatgtgtatattatgtggtcctgctagtttgactatgatctatacctgccaacttttgcatcc |
106 |
Q |
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| T |
26603077 |
agcaattcttcctccagcgacacaatagacagttatatatgtgtatattatgtggtcctgctagtttgactatgatctatacctgccaacttttgcatcc |
26603176 |
T |
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| Q |
107 |
gnnnnnnnnnnnnnnnnnnnnnnnggttagggttaactaagaaggaagtatttttcttgtc--nnnnnnnnnncaagaagaaggaagcattcaagaccnn |
204 |
Q |
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| T |
26603177 |
gtatgtatatacatatatacatatggttagggttaactaagaaggaagtatttttcttgtcaaaaaaaaaaaacaagaagaaggaagcattcaagacctt |
26603276 |
T |
|
| Q |
205 |
nnnnnnaatggactcaaatagttttttactttgtgtttat-attaatagaaagagtttgtattctaaacattcttctccaactcatt |
290 |
Q |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26603277 |
ttttttaatggactcaaatagtttattactttgtgtttataattaatagaaagagtttgtattctaaacattcttctccaactcatt |
26603363 |
T |
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