View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4672_high_16 (Length: 295)
Name: NF4672_high_16
Description: NF4672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4672_high_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 43879436 - 43879704
Alignment:
| Q |
17 |
aaatatagtatgaactgttaagaaattataaaatcagaataaatagcatagatacaattggaagctttcatctaagtgatgctatgcctctaagtgatta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43879436 |
aaatatagtatgaactgttaagaaattataaaatcagaataaatagcatagatacaattggaagctttcatctaagtgatgctatgcctctaagtgatta |
43879535 |
T |
|
| Q |
117 |
tcagaaatccataaaagtgatt-agaaagaaaaatatcagaatacaatcaagatgccaaacaagcttcccaaaagagcctgttcttttccttctcatcta |
215 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43879536 |
tcagaaatccataaaagtgatttagaaagaaaaatatcagaatacaatcaagatgccaaacaagcttcccaaaagagcctgttcttttccttctcatcta |
43879635 |
T |
|
| Q |
216 |
caaactcttggtctgatgaagaatcatcagacacaaaagatttgtagttgttctcttcttgcatctcat |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43879636 |
caaactcttggtctgatgaagaatcatcagacacaaaagacttgtagttgttctcttcttgcatctcat |
43879704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 213
Target Start/End: Complemental strand, 39986771 - 39986719
Alignment:
| Q |
161 |
aatcaagatgccaaacaagcttcccaaaagagcctgttcttttccttctcatc |
213 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| ||||||||| ||||||| |
|
|
| T |
39986771 |
aatcaagatgccaaacaagcttcccagaacctcctattcttttccatctcatc |
39986719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University