View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4672_high_3 (Length: 496)

Name: NF4672_high_3
Description: NF4672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4672_high_3
NF4672_high_3
[»] chr2 (12 HSPs)
chr2 (18-482)||(11195877-11196341)
chr2 (18-482)||(32623886-32624344)
chr2 (18-456)||(144200-144638)
chr2 (70-404)||(7300256-7300589)
chr2 (70-182)||(6822992-6823104)
chr2 (103-272)||(17689609-17689778)
chr2 (82-186)||(1159393-1159497)
chr2 (145-271)||(11579901-11580027)
chr2 (71-121)||(31265804-31265854)
chr2 (97-187)||(44941259-44941349)
chr2 (290-347)||(6823213-6823270)
chr2 (70-182)||(9005415-9005527)
[»] chr1 (13 HSPs)
chr1 (20-441)||(33150522-33150944)
chr1 (70-476)||(26510513-26510916)
chr1 (20-482)||(13867965-13868427)
chr1 (20-242)||(52028212-52028434)
chr1 (70-361)||(5808340-5808625)
chr1 (18-278)||(45794957-45795217)
chr1 (82-185)||(5287589-5287692)
chr1 (79-367)||(1248851-1249138)
chr1 (99-284)||(49458337-49458522)
chr1 (103-272)||(3545461-3545630)
chr1 (72-176)||(6689093-6689197)
chr1 (99-272)||(34824838-34825011)
chr1 (80-161)||(48380421-48380502)
[»] chr4 (13 HSPs)
chr4 (18-471)||(20543611-20544064)
chr4 (18-469)||(43516893-43517344)
chr4 (66-416)||(27299740-27300089)
chr4 (82-185)||(52814077-52814180)
chr4 (73-271)||(19119658-19119856)
chr4 (70-176)||(42272517-42272623)
chr4 (70-186)||(32348754-32348870)
chr4 (74-186)||(41879486-41879598)
chr4 (84-186)||(40483755-40483857)
chr4 (69-159)||(55261567-55261657)
chr4 (70-139)||(48029228-48029297)
chr4 (73-121)||(34104919-34104967)
chr4 (81-138)||(53569598-53569655)
[»] chr7 (13 HSPs)
chr7 (18-471)||(26855239-26855692)
chr7 (18-482)||(35213159-35213623)
chr7 (20-269)||(38488841-38489090)
chr7 (18-152)||(4106880-4107015)
chr7 (82-186)||(27096732-27096836)
chr7 (82-186)||(27181467-27181571)
chr7 (74-182)||(27724554-27724662)
chr7 (69-281)||(34103056-34103268)
chr7 (229-347)||(27724390-27724507)
chr7 (84-170)||(36031673-36031759)
chr7 (295-401)||(37547109-37547215)
chr7 (72-167)||(2686308-2686403)
chr7 (70-182)||(30802224-30802336)
[»] chr5 (11 HSPs)
chr5 (18-467)||(21368083-21368530)
chr5 (18-329)||(5099940-5100251)
chr5 (79-369)||(979350-979640)
chr5 (65-136)||(18718444-18718515)
chr5 (70-284)||(379491-379705)
chr5 (18-114)||(35101032-35101128)
chr5 (103-272)||(475824-475993)
chr5 (70-139)||(14055132-14055201)
chr5 (97-182)||(5909513-5909598)
chr5 (64-161)||(24177185-24177282)
chr5 (70-183)||(27679646-27679759)
[»] chr6 (8 HSPs)
chr6 (18-471)||(14687169-14687621)
chr6 (81-241)||(14320512-14320672)
chr6 (103-272)||(2364716-2364885)
chr6 (107-272)||(22532132-22532297)
chr6 (229-281)||(2710065-2710117)
chr6 (70-186)||(31706349-31706465)
chr6 (73-140)||(33095552-33095619)
chr6 (252-387)||(31706531-31706666)
[»] chr3 (17 HSPs)
chr3 (65-474)||(34828992-34829401)
chr3 (81-469)||(40513869-40514257)
chr3 (18-278)||(20857482-20857742)
chr3 (69-186)||(7935519-7935636)
chr3 (205-278)||(20857941-20858014)
chr3 (70-219)||(35216314-35216463)
chr3 (74-186)||(13700572-13700684)
chr3 (70-182)||(46249307-46249419)
chr3 (106-187)||(11237420-11237501)
chr3 (70-138)||(14306850-14306918)
chr3 (70-135)||(4963942-4964007)
chr3 (99-272)||(31921710-31921883)
chr3 (99-199)||(47748770-47748870)
chr3 (99-186)||(21399990-21400077)
chr3 (71-186)||(31770113-31770228)
chr3 (132-186)||(10349671-10349725)
chr3 (102-272)||(31674540-31674710)
[»] chr8 (8 HSPs)
chr8 (66-467)||(9510370-9510771)
chr8 (70-392)||(25900613-25900934)
chr8 (70-338)||(6244727-6244995)
chr8 (99-272)||(6985098-6985271)
chr8 (89-186)||(12247990-12248087)
chr8 (70-219)||(15438747-15438896)
chr8 (70-219)||(15530051-15530200)
chr8 (371-421)||(6245006-6245056)
[»] scaffold0321 (1 HSPs)
scaffold0321 (97-223)||(17583-17709)
[»] scaffold0246 (1 HSPs)
scaffold0246 (84-186)||(21694-21796)
[»] scaffold0048 (2 HSPs)
scaffold0048 (96-176)||(50910-50990)
scaffold0048 (96-176)||(64205-64285)


Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Original strand, 11195877 - 11196341
Alignment:
Q  18 actaaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||    
T  11195877 actaaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagcaaaggtcaatcgatactcagacataataaagggtccgaccaccatctt 11195976  T
Q  118 tgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttat 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11195977 tgagtaccgaacataaaattgactttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttat 11196076  T
Q  218 tataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttggagaaattactgacgagcctttgagtgacctgtagagtg 317  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11196077 tataaagcatattattacgttcattccaaaccaaccaaataaaaagtaaccaaataagttggagaaattattgacgagcctttgagtgacctgtagagtg 11196176  T
Q  318 agtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcag 417  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11196177 agtaaactgaatgaaatggtcatcaatattaaggaggtcgacacctgacattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcag 11196276  T
Q  418 tgaataaacaaatgagacgcagtctctgccataccgcaccctgtaacacacataactgcctcgcc 482  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  11196277 tgaataaataaatgagacgcaatctctgccataccgcaccctgtaacacacataactgcctcgcc 11196341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 482
Target Start/End: Original strand, 32623886 - 32624344
Alignment:
Q  18 actaaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctt 117  Q
    |||||||||| ||||||| |||| ||||| |||| ||||||| |||||||| ||||||| ||| | ||||| ||| ||||||||||||||||||||| ||    
T  32623886 actaaaagtgccacccctgataacagtcaaacatacaaagtagagtcaaagcaaaggtcgatctaaacccaaacaaaataaagggtccgaccaccat-tt 32623984  T
Q  118 tgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttat 217  Q
    || |||||  |||||||||| ||||||||||||| ||||||| ||||||| |||||||  ||||||||||||||||||||||| ||||||||||| ||||    
T  32623985 tgggtaccatacataaaatttgctttgttagcttgaagccactataaagaatgaaattgaactttatctgctagttgttcaaccgtggtttggatattat 32624084  T
Q  218 tataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttggagaaattactgacgagcctttgagtgacctgtagagtg 317  Q
    || ||||  ||||||||||||| || ||||||| ||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  32624085 taaaaagtctattattacgttcgttccaaaccacccaaacacaaagtaaccaaataagttgaagaaatgactgacgagcctttgagtgacctgtagagtg 32624184  T
Q  318 agtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcag 417  Q
    ||||||||||||||||||||||| ||||      |||||  ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||     
T  32624185 agtaaactgaatgaaatggtcatcaata-----agggtcagcacctgacattccaatccaagacctgataagatgccacaatgaaccaaaagtggcgcaa 32624279  T
Q  418 tgaataaacaaatgagacgcagtctctgccataccgcaccctgtaacacacataactgcctcgcc 482  Q
    |||||||| |||||||| | ||||||| |||||||||| ||||| |||||||||  |||||||||    
T  32624280 tgaataaataaatgagatgtagtctcttccataccgcatcctgtgacacacatacatgcctcgcc 32624344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 456
Target Start/End: Complemental strand, 144638 - 144200
Alignment:
Q  18 actaaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctt 117  Q
    |||||||||||||||||||| || ||||| |||| |||| || |||||||  || |||| ||| | ||||| ||| |||||||||||||||||||||| |    
T  144638 actaaaagtgtcacccctaaaaacagtcaaacatacaaaatagagtcaaaacaatggtcgatctaaacccaaacaaaataaagggtccgaccaccatcgt 144539  T
Q  118 tgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttat 217  Q
    || |||||  |||| ||||| || |||||||||| ||||||||||||||| || |||   |||||||||||||| |  ||||| ||||||||||| ||||    
T  144538 tgggtaccatacatgaaatttgcgttgttagcttgaagccaccataaagaatggaatcgaactttatctgctagattgtcaactgtggtttggatattat 144439  T
Q  218 tataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttggagaaattactgacgagcctttgagtgacctgtagagtg 317  Q
    || ||||| ||||||||||||| || ||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||    
T  144438 taaaaagcctattattacgttcgttccaaaccacccaaacacaaagtaaccaaataagttgaagaaatgactgacgagcctttgagtgacttgtagagtg 144339  T
Q  318 agtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcag 417  Q
    |||||||||||||||||||||||||||| |||  |||||  |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||     
T  144338 agtaaactgaatgaaatggtcattaatagtaaaagggtcagcacctgacattccgatccaagacctgataagatgccacaaagaaccaaaagtggtgcaa 144239  T
Q  418 tgaataaacaaatgagacgcagtctctgccataccgcac 456  Q
    |||||||| | |||||| | ||||||| |||||||||||    
T  144238 tgaataaaaagatgagatgtagtctcttccataccgcac 144200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 70 - 404
Target Start/End: Original strand, 7300256 - 7300589
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    |||||||| |||||||||| |||||| ||||||||||||||||||||||||  |||| ||| |||  ||||  | || |||||||||||| | || ||||    
T  7300256 aaaggtcagtcgatacccaaacataacaaagggtccgaccaccatctttgacaaccgcacacaaacgtggc-atattggctttaagccactaaaacgagt 7300354  T
Q  170 gaaattttactttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaacca 269  Q
    ||||||| || || |||   |||||||||| || |||||||||||||||| | ||    || || | |||||| ||||||| ||| | |||||||| |||    
T  7300355 gaaatttaaccttttctatgagttgttcaatgggggtttggatgttattaaatagtccgttgttgcattcattccaaaccatccagacacaaagtagcca 7300454  T
Q  270 aataagttggagaaattactgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacatt 369  Q
    |||||| || |||||  |  |||| | | |  | ||||| ||| |||||||||||||||||||||| |||  ||||||| | |  || ||||||||||      
T  7300455 aataagctgaagaaaagatcgacgcgtcatcaaatgaccagtatagtgagtaaactgaatgaaatgctcacaaatattatgagtatcaacacctgacaca 7300554  T
Q  370 ctgatccaagacctgataagatgccacaatgaacc 404  Q
    || ||||||||| |||||   |||||||| |||||    
T  7300555 ctaatccaagacatgatatactgccacaaagaacc 7300589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 6822992 - 6823104
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    ||||||||||||||||||| ||| | |||||||| ||||||||||||||||| |||| ||| ||||||||  || |||||||| | ||||||||| || |    
T  6822992 aaaggtcaatcgatacccaaacaaagtaaagggttcgaccaccatctttgagaaccgtacacaaaattggtgttattagcttttaaccaccataacgaat 6823091  T
Q  170 gaaattttacttt 182  Q
    || ||||| ||||    
T  6823092 gatattttgcttt 6823104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 103 - 272
Target Start/End: Original strand, 17689609 - 17689778
Alignment:
Q  103 tccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacgg 202  Q
    ||||||||||| ||||||| |||| ||| |||  |||||||  ||||||| ||||||||||||||||| ||||||||||| |||| ||    ||||| ||    
T  17689609 tccgaccaccacctttgagaaccgtacacaaatgtggctttactagcttttagccaccataaagagtgtaattttactttttctgataagccttcaatgg 17689708  T
Q  203 tggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaat 272  Q
      |||||| | |||||| ||||  | || || |||||||| ||||||| ||| | |||||||||||||||    
T  17689709 atgtttgggtattattaaaaagtctgttgttgcgttcattccaaaccatccacacacaaagtaaccaaat 17689778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 1159497 - 1159393
Alignment:
Q  82 atacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactt 181  Q
    ||||||| |||  ||||||||| |||||||||  |||||| |||| ||| |||| ||| ||| ||||||||||||||||| || || |||||||| ||||    
T  1159497 atacccaaacaatataaagggttcgaccaccaattttgagaaccgtacacaaaagtggtttttttagctttaagccaccacaacgaatgaaatttaactt 1159398  T
Q  182 tatct 186  Q
    |||||    
T  1159397 tatct 1159393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 271
Target Start/End: Complemental strand, 11580027 - 11579901
Alignment:
Q  145 ttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattac 244  Q
    ||||| || |||||||| ||||| |||||||| || || |||   |||||||| | ||||||||||||||||||| | |   ||| ||||||||||||      
T  11580027 ttagcctttagccaccacaaagaatgaaatttaaccttttctagaagttgttctatggtggtttggatgttattaaatattctatcattacgttcattct 11579928  T
Q  245 aaaccaaccaaatacaaagtaaccaaa 271  Q
    |||||| ||| | ||||||||| ||||    
T  11579927 aaaccacccagacacaaagtaaacaaa 11579901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 31265804 - 31265854
Alignment:
Q  71 aaggtcaatcgatacccatacataataaagggtccgaccaccatctttgag 121  Q
    ||||||| | |||||||| ||| | ||||||||||||||||||||||||||    
T  31265804 aaggtcagttgatacccaaacaaagtaaagggtccgaccaccatctttgag 31265854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 44941349 - 44941259
Alignment:
Q  97 aaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctg 187  Q
    ||||| |||||||||||||| || | |||| ||| |||  || | ||||||||||| |||||||| || || ||||| |||||||||||||    
T  44941349 aaaggatccgaccaccatctctgtgaaccgtacacaaatgtgacattgttagcttttagccaccaaaacgaatgaaactttactttatctg 44941259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 6823213 - 6823270
Alignment:
Q  290 gacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcattaatatt 347  Q
    |||| ||||| ||||| ||||||||||||||||| |||| |||||| ||| |||||||    
T  6823213 gacgcgccttcgagtgtcctgtagagtgagtaaattgaaggaaatgctcactaatatt 6823270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 9005415 - 9005527
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    ||||| || |||||||| | |||||  | ||||||||||||||| || ||||  ||| ||||||||||||| || | ||| |||||||||||  | || |    
T  9005415 aaaggccagtcgatacctaaacatagcatagggtccgaccaccaactctgagatccgtacataaaattggcattataagccttaagccaccaatacgaat 9005514  T
Q  170 gaaattttacttt 182  Q
    ||||||| |||||    
T  9005515 gaaatttaacttt 9005527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 441
Target Start/End: Original strand, 33150522 - 33150944
Alignment:
Q  20 taaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaag-gtcaatcgatacccatacataataaagggtccgaccaccatcttt 118  Q
    |||||||| |||||||||||| ||||| |||| ||||||| |||||||  |||  ||| ||||||||||| |||||||||||| ||||||||||||||||    
T  33150522 taaaagtgccacccctaataacagtcaaacatacaaagtagagtcaaaacaaattgtcgatcgatacccagacataataaaggttccgaccaccatcttt 33150621  T
Q  119 gagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttatt 218  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33150622 gagtaccgtacataaaattgactttgttagctttaagccaccataaagagtgaaatcttactttatctgctagttgttcaacggtggtttggatgttatt 33150721  T
Q  219 ataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttggagaaattactgacgagcctttgagtgacctgtagagtga 318  Q
    ||| ||  |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||    
T  33150722 atagagtctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttggagaaatgattgacgagcttttgagtgacctgtagagtga 33150821  T
Q  319 gtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcagt 418  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  33150822 gtaaactgaatgaaatggtcatcaatattaagggggtcggcacctgacattccgatccaagacctgataagatgccacaatgagccaaaagtggcgcagt 33150921  T
Q  419 gaataaacaaatgagacgcagtc 441  Q
    ||||||| |||||||||||||||    
T  33150922 gaataaataaatgagacgcagtc 33150944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 70 - 476
Target Start/End: Complemental strand, 26510916 - 26510513
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    |||||| |||||||||||| |||||||||| ||||||||||  ||||||||| |||| |||||||| |||| || |||||||||||| |||| || ||||    
T  26510916 aaaggtgaatcgatacccaaacataataaatggtccgacca--atctttgagaaccgtacataaaagtggccttattagctttaagctaccaaaaggagt 26510819  T
Q  170 gaaattttactttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaacca 269  Q
    ||||||||||||| ||| |||||||||||| | |||||||||| ||||||| |||  | || ||||||||||| || || |||||   ||||||||||||    
T  26510818 gaaattttactttttctactagttgttcaatgttggtttggatattattatgaagtctgttgttacgttcattccacacaaaccaggcacaaagtaacca 26510719  T
Q  270 aataagttggagaaattactgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacatt 369  Q
     |||||||| ||||   | ||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||||||    
T  26510718 tataagttgaagaaga-attgacgagccttcgagtgacctgtagagtgagtaaactgaatgaaatggtcatcgatattaaaggggtcaacacctgacatt 26510620  T
Q  370 ctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcagtgaataaacaaatgagacgcagtctctgccataccgcaccctgtaacacaca 469  Q
    | |||||||||||||||| |||||||||||| ||| ||| |||| || ||||||||||| |||| ||||| |||| || | ||||| |||||||||||||    
T  26510619 ccgatccaagacctgatatgatgccacaatgtaccgaaaatggcacaatgaataaacaagtgaggcgcagactcttccttgccgcatcctgtaacacaca 26510520  T
Q  470 taactgc 476  Q
    |||||||    
T  26510519 taactgc 26510513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 20 - 482
Target Start/End: Complemental strand, 13868427 - 13867965
Alignment:
Q  20 taaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctttg 119  Q
    |||||||||||||||||  ||||||||  ||| ||| | | |||||| || | ||||  | |||||||| ||||||||||||||||||||||||||||||    
T  13868427 taaaagtgtcacccctagaaatagtcaaccatacaatgaagagtcaatgtgatggtcggttgatacccaaacataataaagggtccgaccaccatctttg 13868328  T
Q  120 agtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttatta 219  Q
     |||||| ||||||||||||| || |||||||| |||||||| ||||||||| |||| ||||| | | |||||||||| | ||| |||||||| ||||||    
T  13868327 tgtaccgtacataaaattggccttattagcttttagccaccacaaagagtgatatttaactttttttactagttgttccatggttgtttggatattatta 13868228  T
Q  220 taaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttggagaaattactgacgagcctttgagtgacctgtagagtgag 319  Q
    |||||  |||||||||||||||| ||||||||||||| ||| ||||||||||||||||| || ||  | ||||| |||   |||||||||||||| ||||    
T  13868227 taaagtctattattacgttcattccaaaccaaccaaacacatagtaaccaaataagttgtaggaaggattgacgggcccgggagtgacctgtagaatgag 13868128  T
Q  320 taaactgaatgaaatggtcattaatattaagggggtcgacacctgacattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcagtg 419  Q
    | ||||||||||||||||||| |||||||||||| ||  ||||||||||||  |||||| |||||| || |||||| || | ||||||||| || || ||    
T  13868127 tgaactgaatgaaatggtcatcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccataaagtaccaaaagtagcacaatg 13868028  T
Q  420 aataaacaaatgagacgcagtctctgccataccgcaccctgtaacacacataactgcctcgcc 482  Q
     | ||| ||||||||  ||| ||||||||| || ||||| ||||||||||   ||||||||||    
T  13868027 tagaaataaatgagaaacagactctgccatgccacacccagtaacacacaatgctgcctcgcc 13867965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 52028212 - 52028434
Alignment:
Q  20 taaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctttg 119  Q
    |||||||| |||||||||||| ||||| |||| |||| || |||||||| ||||||| ||| | ||||| ||| ||||||||||||||||||||||||||    
T  52028212 taaaagtgccacccctaataacagtcaaacatacaaattagagtcaaagcaaaggtcgatctaaacccaaacaaaataaagggtccgaccaccatctttg 52028311  T
Q  120 agtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttatta 219  Q
    ||||||  |||| ||||| ||||||||||||| ||||||||||||||| ||||||   ||||||||||||||| ||||||| ||||||||||| ||||||    
T  52028312 agtaccatacatgaaatttgctttgttagcttgaagccaccataaagaatgaaatcgaactttatctgctagtagttcaactgtggtttggatattatta 52028411  T
Q  220 taaagcatattattacgttcatt 242  Q
     ||||  ||||||||||||||||    
T  52028412 aaaagtctattattacgttcatt 52028434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 70 - 361
Target Start/End: Original strand, 5808340 - 5808625
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    ||||| ||||||||||||| |||||||||||||| ||||| |      || ||||||  || |||| || | || ||||||||||||||| | |||||||    
T  5808340 aaaggacaatcgatacccaaacataataaagggttcgacctc------tgtgtaccgtgcacaaaagtgaccttattagctttaagccactaaaaagagt 5808433  T
Q  170 gaaattttactttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaacca 269  Q
    |||| |||||||| |||||||| ||||| | |||||||||||| || |||| ||   | || |||||||| || ||||||||||| | ||||||||||||    
T  5808434 gaaactttactttttctgctagctgttcgatggtggtttggatattgttatgaaatttgttgttacgttcgttccaaaccaaccagacacaaagtaacca 5808533  T
Q  270 aataagttggagaaattactgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcattaatattaagggggtcgacac 361  Q
    ||||||||| || ||  | ||||||||||||||||||| ||| ||||||||||||||||||||||||||  |||||||| ||| ||| ||||    
T  5808534 aataagttgaaggaaggattgacgagcctttgagtgacatgtcgagtgagtaaactgaatgaaatggtcgctaatattaggggagtcaacac 5808625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 45794957 - 45795217
Alignment:
Q  18 actaaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctt 117  Q
    ||||||||| |||||||||  |||||||| ||||  || | | |||||| || | ||||  | |||||||| ||||||||||||||||||||||||| ||    
T  45794957 actaaaagtatcacccctagaaatagtcaaacatataatgaagagtcaatgtgatggtcggttgatacccaaacataataaagggtccgaccaccatttt 45795056  T
Q  118 tgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttat 217  Q
    || |||||| ||||||||||||| || ||| | || |||||||| ||||||||| |||| ||||| ||| |||| | ||| | ||| |||| ||| ||||    
T  45795057 tgtgtaccgtacataaaattggccttattaacctttagccaccacaaagagtgatatttaactttttctactagctcttccatggttgttttgatattat 45795156  T
Q  218 tataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttg 278  Q
    |||||||  ||||||||||| |||| ||||||||||||| ||| |||||||||||||||||    
T  45795157 tataaagtctattattacgtacattccaaaccaaccaaacacatagtaaccaaataagttg 45795217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 5287589 - 5287692
Alignment:
Q  82 atacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactt 181  Q
    ||||||| |||  ||||||||| ||||||||| ||||||| |||| ||| |||| ||  |||||| |||||||||||||| || || |||||||||||||    
T  5287589 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaagccaccacaacgaatgaaattttactt 5287688  T
Q  182 tatc 185  Q
    ||||    
T  5287689 tatc 5287692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 79 - 367
Target Start/End: Complemental strand, 1249138 - 1248851
Alignment:
Q  79 tcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaatttta 178  Q
    |||||||||| |||||| | |||||||| |||||| |||||||  ||| ||| |||  || | ||  ||||||| |||||||||||||| || ||||| |    
T  1249138 tcgatacccaaacataacagagggtccggccaccacctttgagagccgtacacaaatgtgccattactagcttttagccaccataaagaatgtaatttaa 1249039  T
Q  179 ctttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttg 278  Q
     ||| | |  ||  | ||| | || |||||||||||||||| || |  | || || |||||||| |||| || ||| | |||||||||||||||||||||    
T  1249038 tttt-tgtaataaatcttcgatggaggtttggatgttattaaaatgtttgttgttgcgttcattccaaatcatccacacacaaagtaaccaaataagttg 1248940  T
Q  279 gagaaattactgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcattaatattaagggggtcgacacctgaca 367  Q
     |||||  |  |||  ||||| |||||||||||| ||||| |||||||||| ||||  ||| |||||| | | || || ||||||||||    
T  1248939 aagaaaggatcgacacgccttcgagtgacctgtatagtgaataaactgaataaaattctcactaatatcatgaggatcaacacctgaca 1248851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 99 - 284
Target Start/End: Original strand, 49458337 - 49458522
Alignment:
Q  99 agggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttca 198  Q
    ||||||||||||||| ||||||  |||| ||| |||  |||||||  ||||||| |||||||||||||| |  ||||||||||| |||| ||    ||||    
T  49458337 agggtccgaccaccacctttgataaccgtacacaaatgtggctttactagcttttagccaccataaagaatataattttactttttctgataaaccttca 49458436  T
Q  199 acggtggtttggatgttattataaag-catattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttggagaaa 284  Q
    | |   |||||||| |||||| |||| ||| || || |||||||| ||||||| ||| | |||||| |||||||||||||| |||||    
T  49458437 atgaatgtttggatattattaaaaagtcat-ttgttgcgttcatttcaaaccatccacacacaaagcaaccaaataagttgaagaaa 49458522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 272
Target Start/End: Complemental strand, 3545630 - 3545461
Alignment:
Q  103 tccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacgg 202  Q
    ||||||||||| ||||||| |||  | |||||  |||||||  ||||||| ||||||||||||||||| ||||||||||| |||| ||    ||||| ||    
T  3545630 tccgaccaccacctttgagaaccttatataaatgtggctttactagcttttagccaccataaagagtgtaattttactttttctgataagccttcaatgg 3545531  T
Q  203 tggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaat 272  Q
      |||||| | |||||| ||||  | || || | |||||| ||||||| ||| | |||||||||||||||    
T  3545530 atgtttgggtattattaaaaagtttgttgttgctttcatttcaaaccatccatacacaaagtaaccaaat 3545461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 6689093 - 6689197
Alignment:
Q  72 aggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtga 171  Q
    |||||| |||||||||| |||   ||| ||||||||||| |||||||||||||  || |||||| |||| || ||| |||| |||||||| ||||| | |    
T  6689093 aggtcagtcgatacccagacacggtaacgggtccgaccaacatctttgagtacaaaaaataaaagtggcgttattaacttttagccaccacaaagaatta 6689192  T
Q  172 aattt 176  Q
    |||||    
T  6689193 aattt 6689197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 272
Target Start/End: Complemental strand, 34825011 - 34824838
Alignment:
Q  99 agggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttca 198  Q
    ||||||| ||||||| ||||||  |||| ||| |||  |||||||  || |||| |||||||||||||| || ||||||||||| |||| ||    ||||    
T  34825011 agggtccaaccaccacctttgataaccgtacacaaatgtggctttactaacttttagccaccataaagaatgtaattttactttttctgataaaccttca 34824912  T
Q  199 acggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaat 272  Q
    | ||  ||||| || |||||| ||||  | || || |||||||| ||||||| ||| | ||| |||||||||||    
T  34824911 atggatgtttgaatattattaaaaagtctgttgttgcgttcattccaaaccatccacacacatagtaaccaaat 34824838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 48380421 - 48380502
Alignment:
Q  80 cgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccacca 161  Q
    ||||||||| |||||| |||| ||||||||||||||| | || |||  ||| || | |||| ||||||||||| ||||||||    
T  48380421 cgatacccaaacataacaaagagtccgaccaccatctctaagaaccatacacaagagtggcgttgttagcttttagccacca 48380502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 20543611 - 20544064
Alignment:
Q  18 actaaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctt 117  Q
    |||||||||| |||||||||||| ||||| |||| ||||||| |||||||| ||||||| ||| | ||||| ||||||||||||||||||||||||||||    
T  20543611 actaaaagtgccacccctaataacagtcaaacatacaaagtagagtcaaagcaaaggtcgatctaaacccagacataataaagggtccgaccaccatctt 20543710  T
Q  118 tgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttat 217  Q
    || |||||  |||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| ||||||||||| ||||    
T  20543711 tgggtaccatacataaaattggctttgttagctttaagccaccataaagaatgaaatctaactttatctgctagttgttcaaccgtggtttggatattat 20543810  T
Q  218 tataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttggagaaattactgacgagcctttgagtgacctgtagagtg 317  Q
    || ||||  |||||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  20543811 taaaaagtctattattacgttcattccaaaccacccaaacacaaagtaaccaaataagttgaagaaatggctgacgagcctttgagtgacctgtagagtg 20543910  T
Q  318 agtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcag 417  Q
    ||||||||||||||||||||||| |||||||| ||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20543911 agtaaactgaatgaaatggtcatcaatattaaaggggtcagcacctgacattccgatccaagacctgataagatgccacaatgaaccaaaagtggcgcag 20544010  T
Q  418 tgaataaacaaatgagacgcagtctctgccataccgcaccctgtaacacacata 471  Q
    |||||||| |||||||| | ||||||| |||||||||||||||| |||||||||    
T  20544011 tgaataaataaatgagatgtagtctcttccataccgcaccctgtgacacacata 20544064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 18 - 469
Target Start/End: Complemental strand, 43517344 - 43516893
Alignment:
Q  18 actaaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctt 117  Q
    |||||||||||||||||||  |||||||| |||| ||| | | |||||| |  | ||||  | |||||||| ||||||||||||||  ||||||||||||    
T  43517344 actaaaagtgtcacccctagaaatagtcaaacatacaatgaagagtcaatgcgatggtcggttgatacccaaacataataaagggtatgaccaccatctt 43517245  T
Q  118 tgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttat 217  Q
    || |||||| |||| |||||||| || ||||| || |||||||| ||||||||| |||| ||||| ||| ||||  |||| | ||| |||||||| ||||    
T  43517244 tgtgtaccgtacatcaaattggccttattagcctttagccaccacaaagagtgatatttaactttttctactagccgttccatggttgtttggatattat 43517145  T
Q  218 tataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttggagaaattactgacgagcctttgagtgacctgtagagtg 317  Q
    |||||||  |||||||||||||||| ||||||||||||| ||||||||||||||||||||| || ||  | ||||||||| |||||||||||||||| ||    
T  43517144 tataaagtctattattacgttcattccaaaccaaccaaacacaaagtaaccaaataagttgaaggaaggattgacgagcccttgagtgacctgtagaatg 43517045  T
Q  318 agtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcag 417  Q
    ||| |||| |||||||||||||| |||||||||||| ||  ||||||||||||  |||||| ||||||||| ||||||||| | ||| ||||| || ||     
T  43517044 agtgaactaaatgaaatggtcatcaatattaaggggatcagcacctgacattccaatccaacacctgataaaatgccacaaagtaccgaaagtagcacaa 43516945  T
Q  418 tgaataaacaaatgagacgcagtctctgccataccgcaccctgtaacacaca 469  Q
    || ||||| ||||||||  ||| || || ||| |||||||| ||||||||||    
T  43516944 tgtataaataaatgagaaacagactatgtcatgccgcacccagtaacacaca 43516893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 66 - 416
Target Start/End: Original strand, 27299740 - 27300089
Alignment:
Q  66 aagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaa 165  Q
    ||||||| |||| | |||||||| |||||||||||||||| |||||||||| |||||||||  || |||| |||  || ||||||||||||||||| |||    
T  27299740 aagtaaatgtcagttgatacccaaacataataaagggtccaaccaccatctgtgagtaccgtgcacaaaagtggtcttattagctttaagccaccaaaaa 27299839  T
Q  166 gagtgaaattttactttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagta 265  Q
    |||||||| |||||||| |||||  | ||||||| |||||||||||| || |||| ||  || || |||| ||| || ||||||||||| | |||||| |    
T  27299840 gagtgaaactttactttttctgccggctgttcaatggtggtttggatattgttatgaaatatgttgttacattcgttccaaaccaaccagacacaaag-a 27299938  T
Q  266 accaaataagttggagaaattactgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcattaatattaagggggtcgacacctga 365  Q
    ||||||||||||| || ||  | |||||||||||| |||||||||||||||||||||| ||||||||||||||  |||||||| ||||||| |||||||     
T  27299939 accaaataagttgaaggaaggattgacgagcctttaagtgacctgtagagtgagtaaattgaatgaaatggtcgctaatattaggggggtcaacacctgg 27300038  T
Q  366 cattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgca 416  Q
     |||| ||||||| | ||||||  ||||||||||| ||| |||||||||||    
T  27300039 tattccgatccaacatctgatataatgccacaatgtaccgaaagtggcgca 27300089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 82 - 185
Target Start/End: Original strand, 52814077 - 52814180
Alignment:
Q  82 atacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactt 181  Q
    ||||||| |||  ||||||||| ||||||||| ||||||| |||| ||| |||| ||  |||||| |||||||||||||| || || |||||||||||||    
T  52814077 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtgattttgttggctttaagccaccacaacgaatgaaattttactt 52814176  T
Q  182 tatc 185  Q
    ||||    
T  52814177 tatc 52814180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 73 - 271
Target Start/End: Original strand, 19119658 - 19119856
Alignment:
Q  73 ggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaa 172  Q
    ||||| |||||||||| |||||| ||| |||| |||||||| || | |||  ||  || ||| ||| | || |||||||||||||||||||| || ||||    
T  19119658 ggtcagtcgatacccagacataacaaaaggtctgaccaccaactctaagtgtcgtgcacaaacttgacattattagctttaagccaccataacgaatgaa 19119757  T
Q  173 attttactttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaa 271  Q
    |||| ||||| | |   |||||||| | ||||| |||||| |||||| | |   | |||||||||||||| ||||||| ||| | ||||||||||||||    
T  19119758 atttaactttttataagagttgttctatggtggcttggatattattaaatattttgttattacgttcattccaaaccatccagacacaaagtaaccaaa 19119856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 42272517 - 42272623
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    |||| |||||| | ||||| ||||| ||| ||||||||||||||||| ||| |||||  || |||  |||| || ||||| ||||||||||||||||| |    
T  42272517 aaagatcaatcaagacccaaacatactaaggggtccgaccaccatctctgaataccgttcacaaatgtggcatttttagccttaagccaccataaagaat 42272616  T
Q  170 gaaattt 176  Q
    |||||||    
T  42272617 gaaattt 42272623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 32348870 - 32348754
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    |||||| | |||||||||| ||| |  ||||| |||||||||||||| |||| |||| ||| |||  ||||  | |||||||| ||||||||  | ||||    
T  32348870 aaaggttagtcgatacccaaacaaatcaaaggatccgaccaccatctctgagaaccgtacacaaacatggcggtcttagctttcagccaccaatacgagt 32348771  T
Q  170 gaaattttactttatct 186  Q
    |||||||||||||||||    
T  32348770 gaaattttactttatct 32348754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 41879598 - 41879486
Alignment:
Q  74 gtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaa 173  Q
    |||| |||||||| | ||| | |||||||| |||||||||  |||||| |||| |||||||| ||| ||| |||||||| |  ||||| || ||||||||    
T  41879598 gtcagtcgatacctagacaaagtaaagggttcgaccaccagttttgagaaccgtacataaaagtggttttattagcttttaatcaccacaacgagtgaaa 41879499  T
Q  174 ttttactttatct 186  Q
    ||| |||||||||    
T  41879498 tttaactttatct 41879486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 40483755 - 40483857
Alignment:
Q  84 acccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttacttta 183  Q
    ||||| ||| ||||| ||||||||||||||||| |||| ||||  || |||  |||| || ||| ||||||||||||||| ||| |||||||| |||| |    
T  40483755 acccaaacacaataaggggtccgaccaccatctctgagaaccgtgcacaaacgtggcattattaactttaagccaccatatagaatgaaatttaacttga 40483854  T
Q  184 tct 186  Q
    |||    
T  40483855 tct 40483857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 55261567 - 55261657
Alignment:
Q  69 taaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccac 159  Q
    ||||||||| ||||||||||  || | ||| |||||| |||||||||| |||| |||  ||| |||| |||||||||||||||| ||||||    
T  55261567 taaaggtcagtcgatacccagtcaaagtaacgggtccaaccaccatctctgagaaccatacacaaaagtggctttgttagctttcagccac 55261657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 139
Target Start/End: Original strand, 48029228 - 48029297
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattgg 139  Q
    |||||||| | |||||||| ||| || ||| ||||||||||||||||||||| |||| ||| ||||||||    
T  48029228 aaaggtcagttgatacccaaacaaaacaaatggtccgaccaccatctttgagaaccgtacacaaaattgg 48029297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 34104919 - 34104967
Alignment:
Q  73 ggtcaatcgatacccatacataataaagggtccgaccaccatctttgag 121  Q
    ||||| |||||||||| |||||| |||||||||||||||||||| ||||    
T  34104919 ggtcagtcgatacccaaacataacaaagggtccgaccaccatctctgag 34104967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 53569598 - 53569655
Alignment:
Q  81 gatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattg 138  Q
    |||||||| ||| | ||||||||||||||||||||| |||| |||| ||| |||||||    
T  53569598 gatacccaaacaaagtaaagggtccgaccaccatctctgagaaccgtacacaaaattg 53569655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 26855239 - 26855692
Alignment:
Q  18 actaaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctt 117  Q
    |||||||||||||||||||| || ||||| |||| |||| || |||||||  || |||| ||| | ||||| ||| |||||||||||||||||||||| |    
T  26855239 actaaaagtgtcacccctaaaaacagtcaaacatacaaaatagagtcaaaacaatggtcgatctaaacccaaacaaaataaagggtccgaccaccatcgt 26855338  T
Q  118 tgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttat 217  Q
    || |||||  |||| ||||| || |||||||||| ||||||||||||||| ||||||   |||||||||||||| |  ||||| ||||||||||| ||||    
T  26855339 tgggtaccatacatgaaatttgcgttgttagcttgaagccaccataaagaatgaaatcgaactttatctgctagattgtcaactgtggtttggatattat 26855438  T
Q  218 tataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttggagaaattactgacgagcctttgagtgacctgtagagtg 317  Q
    || ||||| ||||||||||||| || ||||||| ||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  26855439 taaaaagcctattattacgttcgttccaaaccacccaaacacaaagtaaccaaataagttgaagaaatgactgacgagcctttgagtgacctgtagagtg 26855538  T
Q  318 agtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcag 417  Q
    | ||||||||||||||||||||||||||||||  |||||  |||||||||||| |||| |||||||||||||||||||||| ||||||||||||| |||     
T  26855539 aataaactgaatgaaatggtcattaatattaaaagggtcagcacctgacattccgatcaaagacctgataagatgccacaaagaaccaaaagtggtgcaa 26855638  T
Q  418 tgaataaacaaatgagacgcagtctctgccataccgcaccctgtaacacacata 471  Q
    |||||||| | |||||| | ||||||| |||||||||||||||| |||||||||    
T  26855639 tgaataaaaagatgagatgtagtctcttccataccgcaccctgtgacacacata 26855692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 18 - 482
Target Start/End: Original strand, 35213159 - 35213623
Alignment:
Q  18 actaaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctt 117  Q
    |||||||||| ||||||||  |||||||| |||| |||   | |||||| || | ||||  | |||||||  ||||||||||| ||||||||||||||||    
T  35213159 actaaaagtgccacccctagaaatagtcaaacatacaataaagagtcaatgtgatggtcggttgatacccgaacataataaagcgtccgaccaccatctt 35213258  T
Q  118 tgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttat 217  Q
    || |||||| ||||||||||||| || ||||| || | |||||| ||||||||| |||| ||||| ||| |||| ||||| | ||| |||||||| |||     
T  35213259 tgtgtaccgtacataaaattggccttattagcctttaaccaccacaaagagtgatatttaactttttctactagctgttccatggttgtttggatattag 35213358  T
Q  218 tataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttggagaaattactgacgagcctttgagtgacctgtagagtg 317  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||||||||||| || ||  | |||||||||  ||||||||||||||| ||    
T  35213359 tataaagtatattattacgttcattccaaaccaaccaaacacagagtaaccaaataagttgtaggaaggattgacgagcccgtgagtgacctgtagaatg 35213458  T
Q  318 agtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcag 417  Q
    ||| ||||||||||||||||||| |||||||||||| || |||||||||||||  |||||| |||||| || ||||||||| | | | ||||| || ||     
T  35213459 agtgaactgaatgaaatggtcatcaatattaaggggatcaacacctgacattccaatccaacacctgacaaaatgccacaaagtaacgaaagtagcacaa 35213558  T
Q  418 tgaataaacaaatgagacgcagtctctgccataccgcaccctgtaacacacataactgcctcgcc 482  Q
    || ||||| ||||| ||  ||| ||||||||| |||||||| ||||||||||   ||||||||||    
T  35213559 tgtataaataaatgggaaacagactctgccatgccgcacccagtaacacacaatgctgcctcgcc 35213623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 38489090 - 38488841
Alignment:
Q  20 taaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctttg 119  Q
    ||||||||||| |||||  |||||||| |||| ||| | | |||||| || | ||||| ||||||| || ||||||||||||||| ||||||||||||||    
T  38489090 taaaagtgtcatccctagaaatagtcaaacatacaatgaagagtcaatgtgatggtcagtcgatactcaaacataataaagggtctgaccaccatctttg 38488991  T
Q  120 agtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttatta 219  Q
     |||||| ||||||| ||||  || ||||| || | |||||| ||||||||| |||| ||||| ||| |||| ||||| | ||| |||||||| ||||||    
T  38488990 tgtaccgtacataaagttggtcttattagcctttaaccaccacaaagagtgatatttaactttttctactagctgttccatggttgtttggatattatta 38488891  T
Q  220 taaagcatattattacgttcattacaaaccaaccaaatacaaagtaacca 269  Q
    |||||  |||||||||||||||| ||||||| ||||| ||||||||||||    
T  38488890 taaagtctattattacgttcattccaaaccagccaaacacaaagtaacca 38488841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 4107015 - 4106880
Alignment:
Q  18 actaaaagtgtcacccc-taataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatct 116  Q
    ||||||| ||||||||| |||||| ||||| |||| |||||||||||||||  ||||||| ||| | ||||| |||||||||||||||||||||||||||    
T  4107015 actaaaaatgtcaccccctaataacagtcaaacatacaaagtaaagtcaaaacaaaggtcgatctaaacccaaacataataaagggtccgaccaccatct 4106916  T
Q  117 ttgagtaccgaacataaaattggctttgttagcttt 152  Q
    || | ||||  |||||||||||||||||||| ||||    
T  4106915 ttaaataccatacataaaattggctttgttaacttt 4106880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 186
Target Start/End: Original strand, 27096732 - 27096836
Alignment:
Q  82 atacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactt 181  Q
    ||||||| |||  ||||||||| ||||||||| ||||||| |||| ||| |||| ||| |||||| |||||||||||||| || || |||||||| ||||    
T  27096732 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgaaatttaactt 27096831  T
Q  182 tatct 186  Q
    |||||    
T  27096832 tatct 27096836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 27181571 - 27181467
Alignment:
Q  82 atacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactt 181  Q
    ||||||| |||  ||||||||| ||||||||| ||||||| |||| ||| |||| ||| |||||| |||||||||||||| || || |||||||| ||||    
T  27181571 atacccaaacaatataaagggttcgaccaccaactttgagaaccgtacacaaaagtggttttgttggctttaagccaccacaacgaatgaaatttaactt 27181472  T
Q  182 tatct 186  Q
    |||||    
T  27181471 tatct 27181467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 27724662 - 27724554
Alignment:
Q  74 gtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaa 173  Q
    |||| |||||||||| ||| | |||||| ||||||||||||||||||| |||| ||||||||||||  ||  ||||||| | ||||||||| || ||| |    
T  27724662 gtcagtcgatacccaaacaaagtaaaggatccgaccaccatctttgagaaccgtacataaaattggtgttactagcttttaaccaccataacgaatgata 27724563  T
Q  174 ttttacttt 182  Q
    |||| ||||    
T  27724562 ttttgcttt 27724554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 69 - 281
Target Start/End: Original strand, 34103056 - 34103268
Alignment:
Q  69 taaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagag 168  Q
    ||||||||| |||||||||| | | | |||| |||||||||||||||| || |  ||| ||| ||||||||| || || ||||||||||| || || ||     
T  34103056 taaaggtcagtcgatacccaaataaagtaaatggtccgaccaccatctctgcgacccgcacacaaaattggcattattggctttaagccatcaaaacgaa 34103155  T
Q  169 tgaaattttactttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaacc 268  Q
    |||||||| || || |||  |||||  |  | |||||||||||| |||||| | | ||| |||||| ||||||| ||||| | ||| | || ||||||||    
T  34103156 tgaaatttaacattctctaatagttagtatatggtggtttggatattattaaataccatgttattatgttcattccaaacaacccagacactaagtaacc 34103255  T
Q  269 aaataagttggag 281  Q
    |||| || |||||    
T  34103256 aaatgagctggag 34103268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 229 - 347
Target Start/End: Complemental strand, 27724507 - 27724390
Alignment:
Q  229 ttattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttggagaaattactgacgagcctttgagtgacctgtagagtgagtaaactgaa 328  Q
    |||||||||||||| |||| ||||||||  ||||||| ||| || ||||| | |||| || |||| |||||  |||| ||||||||||||||||| ||||    
T  27724507 ttattacgttcattccaaatcaaccaaacgcaaagtagccatattagttgtaaaaatgaccgacgcgccttc-agtgtcctgtagagtgagtaaattgaa 27724409  T
Q  329 tgaaatggtcattaatatt 347  Q
     |||||| ||| |||||||    
T  27724408 ggaaatgttcactaatatt 27724390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 36031673 - 36031759
Alignment:
Q  84 acccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtg 170  Q
    ||||| |||||||||||||||||||||||||||||  |||||| |||||||||| || || |||   || |||||||| ||||||||    
T  36031673 acccaaacataataaagggtccgaccaccatctttatgtaccgtacataaaattagccttattaatctttagccaccacaaagagtg 36031759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 401
Target Start/End: Complemental strand, 37547215 - 37547109
Alignment:
Q  295 gcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacattctgatccaagacctgataagatgcc 394  Q
    |||||||||||||| ||| |||||||||| |||| |||||| ||||| ||||| || ||||| || ||  |||  | ||||| |||||||||| ||||||    
T  37547215 gcctttgagtgaccggtatagtgagtaaattgaaagaaatgctcatttatattgagagggtctaccccaaacaccccgatcctagacctgatatgatgcc 37547116  T
Q  395 acaatga 401  Q
    | |||||    
T  37547115 ataatga 37547109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 2686403 - 2686308
Alignment:
Q  72 aggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaaga 167  Q
    |||||| |||||||||| |||   ||| |||||||||| ||||||||||||||| || | |||| |||| || ||||| || |||||||| |||||    
T  2686403 aggtcagtcgatacccagacactgtaacgggtccgaccgccatctttgagtaccaaatacaaaagtggcattattagcctttagccaccacaaaga 2686308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 30802336 - 30802224
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    |||||| | |||||||||| ||| |  |||||||||||||||| ||| |||| |||| ||| |||  |||| || |||||||| |||||||   | ||||    
T  30802336 aaaggttagtcgatacccaaacaaatcaaagggtccgaccaccgtctctgagaaccgtacacaaacgtggcgttattagctttcagccaccgatacgagt 30802237  T
Q  170 gaaattttacttt 182  Q
    |||| ||||||||    
T  30802236 gaaaatttacttt 30802224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 467
Target Start/End: Complemental strand, 21368530 - 21368083
Alignment:
Q  18 actaaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctt 117  Q
    |||||||||| | |||||||||| ||||| | || |||| || |||||||  || |||| ||| | || || ||| |||||||| |||||||||||||||    
T  21368530 actaaaagtgccgcccctaataacagtcaaatatacaaaatagagtcaaaacaatggtcgatctaaactcaaacaaaataaaggatccgaccaccatctt 21368431  T
Q  118 tgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttat 217  Q
    || |||||  |||| || || ||||||||||||| ||||||||||||||| ||||||   ||||||||||||||||||||||| ||||||||||| ||||    
T  21368430 tgggtaccatacatgaattttgctttgttagcttgaagccaccataaagaatgaaatcgaactttatctgctagttgttcaactgtggtttggatattat 21368331  T
Q  218 tataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttggagaaattactgacgagcctttgagtgacctgtagagtg 317  Q
    || ||||  ||||||||||||| || ||||||| ||||| |||  |||||||||||||||| || ||| |||||||||||||||||||||||||||||||    
T  21368330 taaaaagtctattattacgttcgttccaaaccacccaaacaca--gtaaccaaataagttgaaggaatgactgacgagcctttgagtgacctgtagagtg 21368233  T
Q  318 agtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcag 417  Q
    ||||||||||||||||||||||| ||||||||| |||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  21368232 agtaaactgaatgaaatggtcatcaatattaagagggtcagcacctgacattccgatccaagacctgataagatgccacaatgaaccaaaagtggcgcaa 21368133  T
Q  418 tgaataaacaaatgagacgcagtctctgccataccgcaccctgtaacaca 467  Q
    |||||||| | || ||| | ||||||| |||||||||||||||| |||||    
T  21368132 tgaataaaaagataagatgtagtctcttccataccgcaccctgtgacaca 21368083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 18 - 329
Target Start/End: Complemental strand, 5100251 - 5099940
Alignment:
Q  18 actaaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctt 117  Q
    |||||| ||||||||||||| || ||||| |||| ||||  | |||||||| || |||| ||| | ||||| ||| |||||||||||||||||||||| |    
T  5100251 actaaaggtgtcacccctaaaaacagtcaaacatacaaaaaagagtcaaagcaatggtcgatctagacccaaacaaaataaagggtccgaccaccatcgt 5100152  T
Q  118 tgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttat 217  Q
    || |||||  |||| ||||||||||| ||||||| ||||||||||||||| ||||||   |||||||||||||| |  ||||| ||||||||||| ||||    
T  5100151 tgggtaccatacatgaaattggctttattagcttgaagccaccataaagaatgaaatcgaactttatctgctagattgtcaactgtggtttggatattat 5100052  T
Q  218 tataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttggagaaattactgacgagcctttgagtgacctgtagagtg 317  Q
    || ||||| ||||||||||||| || ||||||| ||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  5100051 taaaaagcctattattacgttcgttccaaaccacccaaacacaaagtaaccaaataagttgaagaaatgactgacgagcctttgagtgacctgtagagtg 5099952  T
Q  318 agtaaactgaat 329  Q
    | ||||||||||    
T  5099951 aataaactgaat 5099940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 79 - 369
Target Start/End: Complemental strand, 979640 - 979350
Alignment:
Q  79 tcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaatttta 178  Q
    |||||||||| |||||||||||| ||||||||||||||||| |||||| ||||||||||||  || ||||| || |||||| | ||||||||| |||| |    
T  979640 tcgatacccaaacataataaaggatccgaccaccatctttgtgtaccgtacataaaattgggcttattagcctttagccactacaaagagtgatatttaa 979541  T
Q  179 ctttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttg 278  Q
     ||| ||| || | ||||| | ||| ||||| || |||||||||||  |||||||||||||||| |||| || |||||  ||||||||| ||||||||||    
T  979540 atttttctacttgctgttccatggttgtttgaatattattataaagtctattattacgttcattccaaatcagccaaacgcaaagtaactaaataagttg 979441  T
Q  279 gagaaattactgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacatt 369  Q
     || ||| | || |||||| |||||||||||||||| ||||| ||||||||||||||||||| |||||||||||| ||  |||||||||||    
T  979440 aaggaatgattgtcgagcccttgagtgacctgtagaatgagtgaactgaatgaaatggtcatcaatattaaggggatcaccacctgacatt 979350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 65 - 136
Target Start/End: Complemental strand, 18718515 - 18718444
Alignment:
Q  65 aaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaat 136  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||| || |||| |||||||||    
T  18718515 aaagtaaaggtcaatcgatacccaaacataataaaggatccgaccaccatctttaagaaccgtacataaaat 18718444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 70 - 284
Target Start/End: Original strand, 379491 - 379705
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    |||||||| |||||||||| |||  | ||||||||||||||||| || |||||| || ||| |||||| || || ||||| |||||||||||||| || |    
T  379491 aaaggtcagtcgatacccaaacaatacaaagggtccgaccaccaactctgagtatcgtacacaaaattagcgttcttagccttaagccaccataacgaat 379590  T
Q  170 gaaattttactttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaacca 269  Q
    ||||||| ||||| |||   ||||| || |||||||||||| | |||||| | |   |||| |||||  |||| || |||| ||| | || |||||||||    
T  379591 gaaatttaactttctctaaaagttggtctacggtggtttgggtattattaaatattctattgttacgagcattccagaccatccagacaccaagtaacca 379690  T
Q  270 aataagttggagaaa 284  Q
    ||| || ||||||||    
T  379691 aatgagctggagaaa 379705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 114
Target Start/End: Original strand, 35101032 - 35101128
Alignment:
Q  18 actaaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccat 114  Q
    |||||||||| || ||||||||| ||| | |||| ||||||| |||||||| ||||||| || ||||| || |||||||||||||||||||||||||    
T  35101032 actaaaagtgccatccctaataacagttaaacatacaaagtagagtcaaagcaaaggtcgattgatactcagacataataaagggtccgaccaccat 35101128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 103 - 272
Target Start/End: Original strand, 475824 - 475993
Alignment:
Q  103 tccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacgg 202  Q
    ||||||||||| ||||||| |||| ||| |||  |||||||  ||||||| ||||||||||||||||| ||||||||||| |||| ||    ||||| ||    
T  475824 tccgaccaccacctttgagaaccgtacacaaatgtggctttactagcttttagccaccataaagagtgtaattttactttttctgataagccttcaatgg 475923  T
Q  203 tggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaat 272  Q
      |||||| | |||||| ||||  | || || |||||||| ||||||| ||| | |||||||||||||||    
T  475924 atgtttgggtattattaaaaagtctgttgttgcgttcattccaaaccatccacacacaaagtaaccaaat 475993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 14055201 - 14055132
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattgg 139  Q
    ||||||||||| ||||||| ||| ||||||||||||| |||||||||||||| |||  ||| ||||||||    
T  14055201 aaaggtcaatcaatacccaaacaaaataaagggtccggccaccatctttgagaaccatacacaaaattgg 14055132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 5909598 - 5909513
Alignment:
Q  97 aaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttacttt 182  Q
    |||||||||||||||||||| |||| | || ||| |||| |||| || || ||||| ||||||||  | |||||||||||||||||    
T  5909598 aaagggtccgaccaccatctctgagaatcgtacacaaaagtggcgttatttgctttcagccaccaatacgagtgaaattttacttt 5909513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 24177185 - 24177282
Alignment:
Q  64 caaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccacca 161  Q
    |||| ||||||||| |||||| |||  || || || | |||| |||||||||| |||| |||  |||||||| |||||||||||||||| ||||||||    
T  24177185 caaaataaaggtcagtcgatatccaagcaaaacaacgagtccaaccaccatctctgagaaccatacataaaagtggctttgttagctttcagccacca 24177282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 183
Target Start/End: Complemental strand, 27679759 - 27679646
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    |||||||  |||||||||| |||||  | |||||||||||||||| | |||| |||| ||| |||| || | || ||||| ||||||||||  || || |    
T  27679759 aaaggtcggtcgatacccaaacatagcatagggtccgaccaccatttctgagaaccgtacacaaaagtgacattattagccttaagccaccggaacgaat 27679660  T
Q  170 gaaattttacttta 183  Q
    ||||||| ||||||    
T  27679659 gaaatttaacttta 27679646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 471
Target Start/End: Complemental strand, 14687621 - 14687169
Alignment:
Q  18 actaaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctt 117  Q
    |||||| ||||||||||||| || ||||| |||| ||||  | |||||||| || |||| ||| | ||||| ||| |||||||||||||||||| ||| |    
T  14687621 actaaaggtgtcacccctaaaaacagtcaaacatacaaaaaagagtcaaagcaatggtcgatctagacccaaacaaaataaagggtccgaccactatcgt 14687522  T
Q  118 tgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttat 217  Q
    || ||||| | ||| |||||||| || ||||||| ||||||||||||||| ||||||   |||||||||||||| |  ||||| ||||||||||| ||||    
T  14687521 tgggtaccta-catgaaattggcgttattagcttgaagccaccataaagaatgaaatcgaactttatctgctagattgtcaactgtggtttggatattat 14687423  T
Q  218 tataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttggagaaattactgacgagcctttgagtgacctgtagagtg 317  Q
    || ||||| ||||||||||||| || ||||||| | ||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  14687422 taaaaagcctattattacgttcgttccaaaccaccaaaacacaaagtaaccaaataagttgaagaaatgactgacgagcctttgagtgacctgtagagtg 14687323  T
Q  318 agtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcag 417  Q
    | ||||||||||||||||| | | |||| |||  |||||  |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||     
T  14687322 aataaactgaatgaaatgggcctcaatagtaaaagggtcagcacctgacattccgatccaagacctgataagatgccacaaagaaccaaaagtggtgcaa 14687223  T
Q  418 tgaataaacaaatgagacgcagtctctgccataccgcaccctgtaacacacata 471  Q
    |||||||| | |||||| | ||||||| ||| |||||||||||| |||||||||    
T  14687222 tgaataaaaagatgagatgtagtctcttccacaccgcaccctgtgacacacata 14687169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 81 - 241
Target Start/End: Complemental strand, 14320672 - 14320512
Alignment:
Q  81 gatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttact 180  Q
    |||||||| ||||||||||||||||||||||| |||||| | |||| ||||||| ||||| || ||||| || |||||||| ||||||||| |||| |||    
T  14320672 gatacccaaacataataaagggtccgaccaccgtctttgtgaaccgtacataaagttggccttcttagcctttagccaccacaaagagtgatatttaact 14320573  T
Q  181 ttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcat 241  Q
    || ||| |||||||||| | |||||||||||| |||||||| ||  |||||||||||||||    
T  14320572 ttttctactagttgttccatggtggtttggatattattatagagtctattattacgttcat 14320512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 272
Target Start/End: Original strand, 2364716 - 2364885
Alignment:
Q  103 tccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacgg 202  Q
    ||||||||||| ||||||| |||| ||| |||  |||||||  ||||||| ||||||||||||||||| ||||||||||| |||  ||    ||||| ||    
T  2364716 tccgaccaccacctttgagaaccgtacacaaatgtggctttactagcttttagccaccataaagagtgtaattttactttttctcataagccttcaatgg 2364815  T
Q  203 tggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaat 272  Q
      |||||| | |||||| ||||  | || || |||||||| ||||||| ||| | |||||||||||||||    
T  2364816 atgtttgggtattattaaaaagtctgttgttgcgttcatttcaaaccatccacacacaaagtaaccaaat 2364885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 272
Target Start/End: Original strand, 22532132 - 22532297
Alignment:
Q  107 accaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggt 206  Q
    ||||||| ||||||| |||| ||| |||  |||||||  ||||||| ||||||||||||||||| ||||||||||| |||  ||    ||||| ||  ||    
T  22532132 accaccacctttgagaaccgtacacaaatgtggctttactagcttttagccaccataaagagtgtaattttactttttctaataagccttcaatggatgt 22532231  T
Q  207 ttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaat 272  Q
    |||| | |||||| ||||  | || || |||||||| ||||||| ||| | |||||||||||||||    
T  22532232 ttgggtattattaaaaagtctgttgttgcgttcattccaaaccatccacacacaaagtaaccaaat 22532297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 2710117 - 2710065
Alignment:
Q  229 ttattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttggag 281  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||| |||||    
T  2710117 ttattacgttcattccaaaccacccaaacacaaagtaaccaaataagctggag 2710065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 31706349 - 31706465
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    |||||||| ||||||| || ||| | |||| |||||||||||||||| ||||  ||| ||| |||  |||| || |||||||| ||||||||||| || |    
T  31706349 aaaggtcagtcgatactcaaacaaattaaaaggtccgaccaccatctctgagagccgcacacaaacgtggcattattagcttttagccaccataacgaat 31706448  T
Q  170 gaaattttactttatct 186  Q
    | ||||| |||||||||    
T  31706449 ggaatttaactttatct 31706465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 33095552 - 33095619
Alignment:
Q  73 ggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggc 140  Q
    ||||| |||||||| | |||||| ||||||||||||||||||||||||| |||| ||| |||| ||||    
T  33095552 ggtcagtcgatacctagacataacaaagggtccgaccaccatctttgagaaccgtacacaaaagtggc 33095619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 387
Target Start/End: Original strand, 31706531 - 31706666
Alignment:
Q  252 ccaaatacaaagtaaccaaataagttggagaaattactgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcattaatattaagg 351  Q
    ||||| |||||| | |||||| | ||||| |||  || |||| |||||||| ||||||||  | ||| |||| |||| |||||||||| |||||||  |     
T  31706531 ccaaacacaaagaagccaaattaattggaaaaacgaccgacgcgcctttgaatgacctgtgtaatgaataaattgaaagaaatggtcactaatattgtga 31706630  T
Q  352 gggtcgacacctgacattctgatccaagacctgata 387  Q
    ||||| ||||| ||||  | ||||||||||||||||    
T  31706631 gggtctacaccagacacaccgatccaagacctgata 31706666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-107; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 65 - 474
Target Start/End: Original strand, 34828992 - 34829401
Alignment:
Q  65 aaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataa 164  Q
    |||| |||||||||||||||| || |||||||||||||| ||||||||||||||||| | || |||||||| |||| || ||||||||||||||||| ||    
T  34828992 aaagcaaaggtcaatcgatactcaaacataataaagggttcgaccaccatctttgagaatcgtacataaaagtggccttattagctttaagccaccaaaa 34829091  T
Q  165 agagtgaaattttactttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagt 264  Q
     ||||||||||| ||||| ||| |||||||||||| | |||||||||| ||||||| |||  | || |||| |||||| ||||||||| |   |||||||    
T  34829092 ggagtgaaatttaactttttctactagttgttcaatgttggtttggatattattatgaagtctgttgttacattcattccaaaccaacaaggcacaaagt 34829191  T
Q  265 aaccaaataagttggagaaattactgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcattaatattaagggggtcgacacctg 364  Q
    ||| | |||||||| |||||  | ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||  |||||||    
T  34829192 aactatataagttgaagaaaggattgacgagccttcgagtgacctgtagagtgagtaaactgaatgaaatggtcatcaatattaaaggggttaacacctg 34829291  T
Q  365 acattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcagtgaataaacaaatgagacgcagtctctgccataccgcaccctgtaac 464  Q
    |||||| |||||||||||||||| |||||||||||| ||  |||||||| || ||||||||||| |||| ||||| |||| || | ||||||||||||||    
T  34829292 acattccgatccaagacctgatatgatgccacaatgtactgaaagtggcacaatgaataaacaagtgaggcgcagactcttccttgccgcaccctgtaac 34829391  T
Q  465 acacataact 474  Q
    ||||||||||    
T  34829392 acacataact 34829401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 81 - 469
Target Start/End: Complemental strand, 40514257 - 40513869
Alignment:
Q  81 gatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttact 180  Q
    |||||||| ||||||||||||||||||||||||| |||| | |||| ||||||| ||||| || ||||| || |||||||| ||||||||| |||| |||    
T  40514257 gatacccaaacataataaagggtccgaccaccatttttgtgaaccgtacataaagttggccttattagcctttagccaccacaaagagtgatatttaact 40514158  T
Q  181 ttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttgga 280  Q
    || ||| |||||||||| | |||||||||||| |||||||| ||  |||||||||||||||| ||||||||||||| ||| ||||||||||||||||| |    
T  40514157 ttttctactagttgttccatggtggtttggatattattatagagtctattattacgttcattccaaaccaaccaaacacatagtaaccaaataagttgta 40514058  T
Q  281 gaaattactgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacattctgatccaaga 380  Q
    ||||  | ||||| |||  |||||||||| |||| ||||  |||||||||||||| |||| |||||||||||| ||  ||| ||||||||  |||||| |    
T  40514057 gaaaggattgacgggcccgtgagtgacctatagaatgagcgaactgaatgaaatgttcatcaatattaaggggatcagcacatgacattccaatccaaca 40513958  T
Q  381 cctgataagatgccacaatgaaccaaaagtggcgcagtgaataaacaaatgagacgcagtctctgccataccgcaccctgtaacacaca 469  Q
    ||||| || |||||| || | ||||||||| |  || || | ||| ||||||||  ||| ||||||||| || ||||| | ||||||||    
T  40513957 cctgacaaaatgccataaagtaccaaaagtaggacaatgtagaaataaatgagagacagactctgccatgccacacccggaaacacaca 40513869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 20857482 - 20857742
Alignment:
Q  18 actaaaagtgtcacccctaataatagtcagacatgcaaagtaaagtcaaagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctt 117  Q
    |||||||||||||||||||  |||||||| |||| ||| | | || ||| || | ||||  | |||||||| | ||||||||||||||||||||||||||    
T  20857482 actaaaagtgtcacccctagaaatagtcaaacatacaatgaagaggcaatgtgatggtcggttgatacccaaatataataaagggtccgaccaccatctt 20857581  T
Q  118 tgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacggtggtttggatgttat 217  Q
    || |||||| ||||||||||||| || ||||| || |||||||| ||||||||  |||| ||||| ||| |||||||||| | ||| |||||||| ||||    
T  20857582 tgtgtaccgtacataaaattggccttattagccttgagccaccacaaagagtggtatttaactttttctactagttgttccatggttgtttggatattat 20857681  T
Q  218 tataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttg 278  Q
    |||||||  |||||||||||||||| ||||||||||| | ||| |||||||||||||||||    
T  20857682 tataaagtctattattacgttcattccaaaccaaccagacacatagtaaccaaataagttg 20857742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 186
Target Start/End: Original strand, 7935519 - 7935636
Alignment:
Q  69 taaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagag 168  Q
    |||| |||| |||||||||| |||  | ||||||| |||| |||| ||||||| |||| ||| |||| ||| |||||| |||||||||||||| |||||     
T  7935519 taaaagtcagtcgatacccagacaataaaaagggttcgactaccaactttgagaaccgtacacaaaagtggttttgttggctttaagccaccacaaagaa 7935618  T
Q  169 tgaaattttactttatct 186  Q
    ||||||||||||||||||    
T  7935619 tgaaattttactttatct 7935636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 20857941 - 20858014
Alignment:
Q  205 gtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaataagttg 278  Q
    |||||||| |||||||||||  |||||||||||||||| ||||||||||| | ||| |||||||||||||||||    
T  20857941 gtttggatattattataaagtctattattacgttcattccaaaccaaccagacacatagtaaccaaataagttg 20858014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 219
Target Start/End: Complemental strand, 35216463 - 35216314
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    |||||||| |||||||||| |||    | ||||||| |||||||||| ||||||||| ||| ||||||||| || ||||| ||||||||||||||  | |    
T  35216463 aaaggtcagtcgatacccaaacaatgcatagggtccaaccaccatctctgagtaccgtacacaaaattggcgttcttagccttaagccaccataacaaat 35216364  T
Q  170 gaaattttactttatctgctagttgttcaacggtggtttggatgttatta 219  Q
    ||||||| ||||| |||   ||||| || |||||||||||| | ||||||    
T  35216363 gaaatttaactttctctaaaagttggtctacggtggtttgggtattatta 35216314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 13700684 - 13700572
Alignment:
Q  74 gtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaa 173  Q
    |||| |||||||||| |||  ||||||||| ||||||||| ||||||| | || ||| |||| ||  ||||||| ||||||||||||| ||  | |||||    
T  13700684 gtcagtcgatacccaaacaatataaagggttcgaccaccaactttgagaaacgtacacaaaagtgattttgttaactttaagccaccacaagaaatgaaa 13700585  T
Q  174 ttttactttatct 186  Q
    |||||||||||||    
T  13700584 ttttactttatct 13700572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 46249419 - 46249307
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    |||||||| |||||||||| ||| | |||||||||||||||||||||||| | |||| ||| ||||||||  || ||| |||| | ||||||||| || |    
T  46249419 aaaggtcagtcgatacccaaacaaagtaaagggtccgaccaccatctttgggaaccgtacacaaaattggtgttattaacttttaaccaccataacgaat 46249320  T
Q  170 gaaattttacttt 182  Q
    || ||||| ||||    
T  46249319 gatattttgcttt 46249307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 187
Target Start/End: Original strand, 11237420 - 11237501
Alignment:
Q  106 gaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctg 187  Q
    |||||||| ||||||| |||| ||| |||  || ||||  ||||||| ||||||||||||||||| ||||||||||||||||    
T  11237420 gaccaccacctttgagaaccgtacacaaatgtgactttactagcttttagccaccataaagagtgcaattttactttatctg 11237501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 14306850 - 14306918
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattg 138  Q
    |||||||| |||||||||| ||| |||||||||| |||||||||||| |||| |||| ||| |||||||    
T  14306850 aaaggtcagtcgatacccaaacaaaataaagggttcgaccaccatctctgagaaccgtacacaaaattg 14306918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 135
Target Start/End: Original strand, 4963942 - 4964007
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaa 135  Q
    |||||||| |||||||||| ||| | ||||||||||||||||||||| |||| |||| ||| ||||    
T  4963942 aaaggtcagtcgatacccagacaaagtaaagggtccgaccaccatctctgagaaccgtacacaaaa 4964007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 99 - 272
Target Start/End: Complemental strand, 31921883 - 31921710
Alignment:
Q  99 agggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttca 198  Q
    ||||| ||||||||| || |||  |||| ||| ||| ||||||||  ||||||| |||||||||||||| || ||||||||||| |||| ||    ||||    
T  31921883 agggttcgaccaccacctctgataaccgtacacaaatttggctttactagcttttagccaccataaagaatgtaattttactttttctgataaaccttca 31921784  T
Q  199 acggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaat 272  Q
    |  |  |||||||| |||||| ||||  | || || |||||||| ||||||| ||| | ||| |||||||||||    
T  31921783 attgatgtttggatattattaaaaagtctgttgttgcgttcattccaaaccatccacacacatagtaaccaaat 31921710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 47748770 - 47748870
Alignment:
Q  99 agggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttca 198  Q
    ||||| ||||||||| ||||||| |||| ||| |||| |||  || || |||||||||||||| || || |||||||| ||||||| |  ||||||||||    
T  47748770 agggttcgaccaccaactttgagaaccgtacacaaaagtggtattattggctttaagccaccacaacgaatgaaatttaactttatttaatagttgttca 47748869  T
Q  199 a 199  Q
    |    
T  47748870 a 47748870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 21399990 - 21400077
Alignment:
Q  99 agggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatct 186  Q
    ||||| ||||||||| ||||||| |||| ||| |||| |||  || || |||||||||||||| || || |||||||| |||||||||    
T  21399990 agggttcgaccaccaactttgagaaccgtacacaaaagtggtattattggctttaagccaccacaacgaatgaaatttaactttatct 21400077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 186
Target Start/End: Complemental strand, 31770228 - 31770113
Alignment:
Q  71 aaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtg 170  Q
    ||||||| |||| ||||| ||| || | |||||||||||||||||| |||||  |  ||| |||  | |  || |||||||| |||||||| ||||| ||    
T  31770228 aaggtcagtcgaaacccaaacacaacatagggtccgaccaccatctctgagtgtcatacacaaacgtagtgtttttagcttttagccaccacaaagaatg 31770129  T
Q  171 aaattttactttatct 186  Q
    ||||||||||||||||    
T  31770128 aaattttactttatct 31770113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 10349671 - 10349725
Alignment:
Q  132 aaaattggctttgttagctttaagccaccataaagagtgaaattttactttatct 186  Q
    ||||||||| ||||| |||||||||||||||||||| | | | ||||||||||||    
T  10349671 aaaattggcattgtttgctttaagccaccataaagaataatactttactttatct 10349725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 272
Target Start/End: Original strand, 31674540 - 31674710
Alignment:
Q  102 gtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttcaacg 201  Q
    |||||||||||| || |||  |||| ||| ||| ||||||||  ||||||| |||||||||||| | || ||||||||||| |||| ||    |||||      
T  31674540 gtccgaccaccacctctgataaccgtacacaaatttggctttactagcttttagccaccataaacaatgtaattttactttttctgataaaccttcaatt 31674639  T
Q  202 gtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaat 272  Q
    |  |||||||| |||||| ||||  | || || |||||||| ||||||| ||| | ||| |||||||||||    
T  31674640 gatgtttggatattattaaaaagtctgttgttgcgttcattccaaaccatccacacacatagtaaccaaat 31674710  T

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Target: chr8 (Bit Score: 170; Significance: 5e-91; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 66 - 467
Target Start/End: Original strand, 9510370 - 9510771
Alignment:
Q  66 aagtaaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaa 165  Q
    |||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||   || |||| |||| || ||||||||||||||||| |||    
T  9510370 aagtaaaggtcagtcgatacccaaacataataaagggtccgaccaccatctgtgagtaccctgcacaaaagtggccttattagctttaagccaccaaaaa 9510469  T
Q  166 gagtgaaattttactttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagta 265  Q
    |||||||| |||||||| |||||||||||||||| |||||||||||| || |||| ||   | || |||||||| ||  |||||||||| | |||| |||    
T  9510470 gagtgaaactttactttttctgctagttgttcaatggtggtttggatattgttatgaaatttgttgttacgttcgttcgaaaccaaccagacacaatgta 9510569  T
Q  266 accaaataagttggagaaattactgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcattaatattaagggggtcgacacctga 365  Q
    ||||||||||||| || ||  | ||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| ||||||| |||||||     
T  9510570 accaaataagttgaaggaaggattgacgagcctttgagtgacttgtagagtgagtaaactgaatgaaatggtcgctaatattaggggggtcaacacctgg 9510669  T
Q  366 cattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcagtgaataaacaaatgagacgcagtctctgccataccgcaccctgtaaca 465  Q
     |||| ||||||| |||||||| |||||||||||| ||  ||||||||||| |||| ||| || || | ||||| |||| |||| || || |||| ||||    
T  9510670 tattccgatccaacacctgatatgatgccacaatgtactgaaagtggcgcaatgaagaaataagtgtgtcgcagactcttccatgccccaacctgcaaca 9510769  T
Q  466 ca 467  Q
    ||    
T  9510770 ca 9510771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 70 - 392
Target Start/End: Original strand, 25900613 - 25900934
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgtta-gctttaagccaccataaagag 168  Q
    ||||||||||||||||||| |||||||||||||||| ||||| ||||||||| |||| |||||||| |||| || ||| |||||||||||| | || |||    
T  25900613 aaaggtcaatcgatacccaaacataataaagggtccaaccac-atctttgagaaccgtacataaaagtggccttattaagctttaagccacaa-aaggag 25900710  T
Q  169 tgaaattttactttatctgctagttgttcaacggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaacc 268  Q
    | |||||| || || ||| |||||||||||| | ||| |||||| ||||||| |||  | || ||||||||||| |||||||||||   |||||||||||    
T  25900711 taaaatttaaccttttctactagttgttcaatgttggattggatattattatgaagtctgttgttacgttcattccaaaccaaccaggcacaaagtaacc 25900810  T
Q  269 aaataagttggagaaattactgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtcattaatattaagggggtcgacacctgacat 368  Q
    | |||||||| |||||| | |||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||    
T  25900811 atataagttgaagaaatgattgacgagccttcaagtgacctgtagagtgagtaaactgaatgaaatggtcatcaatattaaaggggtcaacacctgacat 25900910  T
Q  369 tctgatccaagacctgataagatg 392  Q
    || |||||||||||| ||| ||||    
T  25900911 tccgatccaagacctaatatgatg 25900934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 70 - 338
Target Start/End: Original strand, 6244727 - 6244995
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    |||||||| |||||||||| ||||||||||||||| ||||||||||| ||||||||| ||| |||| | || || |||||||||||||| || |||||||    
T  6244727 aaaggtcagtcgatacccaaacataataaagggtctgaccaccatctgtgagtaccgtacacaaaagtagccttattagctttaagccatcaaaaagagt 6244826  T
Q  170 gaaattttactttatctgctagttgttcaacggtggtttggatgttattat--aaagcatattattacgttcattacaaaccaaccaaatacaaagtaac 267  Q
    |||| || ||||| |||||||||||||| | |||||||||||| || ||||  ||| | | || ||||||||| ||||||||||||| | ||||||||||    
T  6244827 gaaacttcactttttctgctagttgttcgatggtggtttggatattgttattgaaatc-tgttgttacgttca-tacaaaccaaccagacacaaagtaac 6244924  T
Q  268 caaataagttggagaaattactgacgagcctttgagtgacctgtagagtgagtaaactgaatgaaatggtc 338  Q
    ||||||||||| || ||  | |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6244925 caaataagttgaaggaaggattgacgagcctttaagtgacctgtagagtgagtaaactgaatgaaatggtc 6244995  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 272
Target Start/End: Complemental strand, 6985271 - 6985098
Alignment:
Q  99 agggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgttca 198  Q
    ||||||||||||||||||||||  |||| ||| |||  |||||||  ||||||| |||||||||||||| || ||||||||||  |||| ||    ||||    
T  6985271 agggtccgaccaccatctttgataaccgtacacaaatgtggctttactagcttttagccaccataaagaatgtaattttacttgttctgataaaccttca 6985172  T
Q  199 acggtggtttggatgttattataaagcatattattacgttcattacaaaccaaccaaatacaaagtaaccaaat 272  Q
    | ||  |||||||| |||||| ||||  | || || |||||||| ||||||| ||| | ||||||||| |||||    
T  6985171 atggatgtttggatattattaaaaagtctgttgttgcgttcattccaaaccatccacacacaaagtaatcaaat 6985098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 186
Target Start/End: Complemental strand, 12248087 - 12247990
Alignment:
Q  89 tacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatct 186  Q
    |||| |||||||||   |||||||| ||||| | |||||||| |||| ||| ||| || |||||||||||||| || || |||||||| |||||||||    
T  12248087 tacaaaataaagggctggaccaccaactttgggaaccgaacacaaaagtggttttattggctttaagccaccacaacgaatgaaatttaactttatct 12247990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 219
Target Start/End: Original strand, 15438747 - 15438896
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    |||||||| |||||||||| ||| |  | |||||||||||||||||| | |||| || ||| ||||||||  || ||||| ||||||||||| |  || |    
T  15438747 aaaggtcagtcgatacccaaacaaagcatagggtccgaccaccatctcttagtatcgtacacaaaattggtgttattagccttaagccaccaaagcgaat 15438846  T
Q  170 gaaattttactttatctgctagttgttcaacggtggtttggatgttatta 219  Q
    ||||||| ||||| |||   ||||| || ||||| |||||| | ||||||    
T  15438847 gaaatttaactttctctaaaagttgatctacggttgtttgggtattatta 15438896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 70 - 219
Target Start/End: Original strand, 15530051 - 15530200
Alignment:
Q  70 aaaggtcaatcgatacccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagt 169  Q
    |||||||| |||||||||| ||| |  | |||||||||||||||||| | |||| || ||| ||||||||  || ||||| ||||||||||| |  || |    
T  15530051 aaaggtcagtcgatacccaaacaaagcatagggtccgaccaccatctcttagtatcgtacacaaaattggtgttattagccttaagccaccaaagcgaat 15530150  T
Q  170 gaaattttactttatctgctagttgttcaacggtggtttggatgttatta 219  Q
    ||||||| ||||| |||   ||||| || ||||| |||||| | ||||||    
T  15530151 gaaatttaactttctctaaaagttgatctacggttgtttgggtattatta 15530200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 421
Target Start/End: Original strand, 6245006 - 6245056
Alignment:
Q  371 tgatccaagacctgataagatgccacaatgaaccaaaagtggcgcagtgaa 421  Q
    |||||||| |||||||| |||||||||||| ||| ||||||||||| ||||    
T  6245006 tgatccaacacctgatatgatgccacaatgtaccgaaagtggcgcaatgaa 6245056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 223
Target Start/End: Complemental strand, 17709 - 17583
Alignment:
Q  97 aaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttactttatctgctagttgtt 196  Q
    ||||||||||||||||| || ||||||||| ||| |||| |  | || ||||| |||||||||||||| || | |||||| ||||| |||   ||||| |    
T  17709 aaagggtccgaccaccaactctgagtaccgtacacaaaaataacgttcttagccttaagccaccataacgaataaaatttaactttctctaaaagttgat 17610  T
Q  197 caacggtggtttggatgttattataaa 223  Q
    | |||||||||||| | ||||| ||||    
T  17609 ctacggtggtttgggtattattttaaa 17583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 21694 - 21796
Alignment:
Q  84 acccatacataataaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattttacttta 183  Q
    ||||| ||| ||||| ||||||||||||||||| |||| ||||  || |||  |||| || ||| ||||||||||||||| ||| |||||||| |||| |    
T  21694 acccaaacacaataaggggtccgaccaccatctctgagaaccgtgcacaaacgtggcattattaactttaagccaccatatagaatgaaatttaacttga 21793  T
Q  184 tct 186  Q
    |||    
T  21794 tct 21796  T

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Target: scaffold0048 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 50990 - 50910
Alignment:
Q  96 taaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattt 176  Q
    |||||| |||||||||||||| |||| |||  ||| |||  |||| ||||| || ||||||||||||||||| ||||||||    
T  50990 taaaggatccgaccaccatctctgagaaccttacacaaatgtggccttgtttgccttaagccaccataaagaatgaaattt 50910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 64285 - 64205
Alignment:
Q  96 taaagggtccgaccaccatctttgagtaccgaacataaaattggctttgttagctttaagccaccataaagagtgaaattt 176  Q
    |||||| |||||||| ||||| |||| |||| ||| |||  |||| || || || ||||||||||||||||| ||||||||    
T  64285 taaaggatccgaccatcatctctgagaaccgtacacaaatgtggcattatttgccttaagccaccataaagaatgaaattt 64205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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