View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4672_high_4 (Length: 492)
Name: NF4672_high_4
Description: NF4672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4672_high_4 |
 | |
|
| [»] scaffold0341 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 26 - 476
Target Start/End: Original strand, 47713218 - 47713668
Alignment:
| Q |
26 |
aatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcat |
125 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713218 |
aatattgattggtttgagtaacgcaacatgtagtcctcataccaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcat |
47713317 |
T |
|
| Q |
126 |
tgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaccc |
225 |
Q |
| |
|
||||| ||| |||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
47713318 |
tgagacgactgcggcaaacatcaggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaaacc |
47713417 |
T |
|
| Q |
226 |
gtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagttgccattattgtttaaacaa |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
47713418 |
gtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagttgccattattgtttatacaa |
47713517 |
T |
|
| Q |
326 |
gagtagcgcacaaaatctggttggccctgggcttgagatacgataatgataataaaaaggagaaaagagtaaaaggaaaataatagcttgctagaaacaa |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713518 |
gagtagcgcacaaaatctggttggccctgggcttgagatacgataatgataataaaaaggagaaaagagtaaaaggaaaataatagcttgctagaaacaa |
47713617 |
T |
|
| Q |
426 |
ttgtcattctgatatattgatctctgtcttggaacaagaacaggttattaa |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47713618 |
ttgtcattctgatatattgatctctgtcttggaacaagaacaggttattaa |
47713668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 2 - 476
Target Start/End: Original strand, 47717988 - 47718459
Alignment:
| Q |
2 |
gaaggtgaagcttccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttggtttggacaaagtt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47717988 |
gaaggtgaagcttccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttggtttggacaaagtt |
47718087 |
T |
|
| Q |
102 |
ttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttg |
201 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47718088 |
ttgtgagaagaactcttgaatcattgagacaacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttg |
47718187 |
T |
|
| Q |
202 |
gccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtg |
301 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47718188 |
gccataagagaaattgtagaaaccgtagttgatttctgtgttggaagttagattggacaaaagggtgctgaggttgttttgataggtgctattggctgtg |
47718287 |
T |
|
| Q |
302 |
tagttgccattattgtttaaacaagagtagcgcacaaaatctggttggccctgggcttgagatacgataatgataataaaaaggagaaaagagtaaaagg |
401 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
47718288 |
tagttgccattattgtttatacaatagttgcgcaaaaaatttggttggccttgggcttgagatacgataatgataataaaa---agaacagaataaaagg |
47718384 |
T |
|
| Q |
402 |
aaaataatagcttgctagaaacaattgtcattctgatatattgatctctgtcttggaacaagaacaggttattaa |
476 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47718385 |
aaaataatagcttgctagaaacagttgtcattcgtgtatattgatctctgtcttggaacaagaacaggtaattaa |
47718459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 14 - 476
Target Start/End: Original strand, 47745789 - 47746251
Alignment:
| Q |
14 |
tccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttggtttggacaaagttttgtgagaagaa |
113 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||| | ||||||||| ||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47745789 |
tccataatgccaaatattgatcggtttgagtaacgcaacatgcagttatcataccaactaattgcttctttttgggttggacaaagttttgtgagaagaa |
47745888 |
T |
|
| Q |
114 |
ctcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaa |
213 |
Q |
| |
|
|||||||||| |||||| |||| ||||||| ||| ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47745889 |
ctcttgaatcgttgagacaactgcggcaaaggtcgggtttaacatctcctctgcagagtccaatggcgtttactttatcagtgttttggccataagagaa |
47745988 |
T |
|
| Q |
214 |
attgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagttgccatta |
313 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47745989 |
attgtagaaaccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagttgccatta |
47746088 |
T |
|
| Q |
314 |
ttgtttaaacaagagtagcgcacaaaatctggttggccctgggcttgagatacgataatgataataaaaaggagaaaagagtaaaaggaaaataatagct |
413 |
Q |
| |
|
||||||| |||| ||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47746089 |
ttgtttatacaatagttgcgcaaaaaatttggttggccttgggcttgagatacgataatgataataaaaaggagaaaagagtaaagggaaaataatagct |
47746188 |
T |
|
| Q |
414 |
tgctagaaacaattgtcattctgatatattgatctctgtcttggaacaagaacaggttattaa |
476 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47746189 |
tgctagatacaattgtcattgtgatatattgatctctgtcttggaacaagaacaggtaattaa |
47746251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 459
Target Start/End: Original strand, 47760112 - 47760561
Alignment:
| Q |
5 |
ggtgaagcttccataacgccgaatattgatcggtttgagtaacgcaacatgcagtcaacataccaaccaatcgcttctttttggtttggacaaagttttg |
104 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47760112 |
ggtgaaccttccataacgccgaatattgatcggtttgagtaacgcaacatgcagttatcataccaaccaattgcttctttttggtttggacaaagttttg |
47760211 |
T |
|
| Q |
105 |
tgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggcc |
204 |
Q |
| |
|
||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
47760212 |
tgagaagaactcttgaatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtcagtgttttggcc |
47760311 |
T |
|
| Q |
205 |
ataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtag |
304 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||| | ||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47760312 |
ataagaaatattgtagaaaccgtagttgatttctgcgttggaagttagattggacaaaacggtgttgaggttgttttgataggtgctattggctgtgtag |
47760411 |
T |
|
| Q |
305 |
ttgccattattgtttaaacaagagtagcgcacaaaatctggttggccctgggcttgagatacgataatgataataaaaaggagaaaagagtaaaaggaaa |
404 |
Q |
| |
|
|||||||||| |||| |||| ||| | || |||||| |||||| | | |||||||||||| || |||| | || ||||||||| ||||||| || |
|
|
| T |
47760412 |
ttgccattatcgtttttacaaaagttgtacagaaaatcaggttgggctttggcttgagatac---aaaagtaatgagaaagagaaaagaataaaaggtaa |
47760508 |
T |
|
| Q |
405 |
ataatagcttgctagaaacaattgtcattctgatatattgatctctgtcttggaa |
459 |
Q |
| |
|
||||| ||||| ||||||||||| ||| ||| |||||| |||||||||||||| |
|
|
| T |
47760509 |
gtaataacttgcaagaaacaattgccatgctg--atattgctctctgtcttggaa |
47760561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 149 - 306
Target Start/End: Original strand, 6512957 - 6513114
Alignment:
| Q |
149 |
ggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaag |
248 |
Q |
| |
|
||||| ||||||||||| || || |||| |||||||||||||| |||||| ||||||||| |||| ||||| ||||||||||| | ||||||||| |
|
|
| T |
6512957 |
ggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagttgatatctttgttggaag |
6513056 |
T |
|
| Q |
249 |
tgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagtt |
306 |
Q |
| |
|
||||| |||||| ||||||||| ||||| || ||||||||||| |||| ||||||||| |
|
|
| T |
6513057 |
tgagagtggatagaagggtgttaaggtttttgtgataggtgctgttggttgtgtagtt |
6513114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 276
Target Start/End: Complemental strand, 6521808 - 6521552
Alignment:
| Q |
26 |
aatattgatcggtttgagtaacgcaacatgcagtcaacat------accaaccaatcgcttctttttggtttggacaaagttttgtgagaagaactcttg |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| || ||| |||| ||||| ||||||||| ||||| ||||| ||| ||| |||||||| ||| |
|
|
| T |
6521808 |
aatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttg |
6521709 |
T |
|
| Q |
120 |
aatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgta |
219 |
Q |
| |
|
||| ||||| || || | ||| | | |||| ||||||||||| || || |||| |||||||||||||||||||| | ||||||||| |||| || |
|
|
| T |
6521708 |
aatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgtttccataagaggaattata |
6521609 |
T |
|
| Q |
220 |
gaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggtt |
276 |
Q |
| |
|
||| ||||||||||| | |||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
6521608 |
gaaaccgtagttgatatctttgttggaagtgagagtggataaaagggtgttaaggtt |
6521552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 157 - 304
Target Start/End: Original strand, 6517364 - 6517511
Alignment:
| Q |
157 |
atctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattg |
256 |
Q |
| |
|
|||||||||||| || |||| |||||||||||||| ||||| |||||||||| | || ||||| ||||||||||||| |||||||||||||| || |
|
|
| T |
6517364 |
atctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccataagaggagttatagaaaccgtagttgatttctttgttggaagtgagaatg |
6517463 |
T |
|
| Q |
257 |
gataaaagggtgttgaggttgttttgataggtgctattggctgtgtag |
304 |
Q |
| |
|
|||||||||||||| ||||| | || |||||||| |||| ||||||| |
|
|
| T |
6517464 |
gataaaagggtgttaaggtttgtgtggtaggtgctgttggttgtgtag |
6517511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 311
Target Start/End: Original strand, 6507056 - 6507218
Alignment:
| Q |
149 |
ggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaag |
248 |
Q |
| |
|
||||| ||||||||||| || || |||| |||||||||||||| |||||| |||||||||| |||| ||||| |||||||| || | ||||||||| |
|
|
| T |
6507056 |
ggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaag |
6507155 |
T |
|
| Q |
249 |
tgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagttgccat |
311 |
Q |
| |
|
||||| |||||| |||||| |||||||| | || |||||||| |||| ||||||||| |||| |
|
|
| T |
6507156 |
tgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccat |
6507218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 6500263 - 6500384
Alignment:
| Q |
185 |
actttgtcagtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgat |
284 |
Q |
| |
|
|||||||| |||||| ||||| || ||||||||||| ||||||||||||| ||||||||||||||| | |||||||| ||||||||||| || | || |
|
|
| T |
6500263 |
actttgtcgctgttttcgccatgtgaaaaattgtagaaaccgtagttgatttctgtgttggaagtgagagttgataaaagtgtgttgaggtttttgtcat |
6500362 |
T |
|
| Q |
285 |
aggtgctattggctgtgtagtt |
306 |
Q |
| |
|
|||||||||| | ||||||||| |
|
|
| T |
6500363 |
aggtgctatttgttgtgtagtt |
6500384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 63 - 258
Target Start/End: Complemental strand, 6523767 - 6523572
Alignment:
| Q |
63 |
cataccaaccaatcgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcc |
162 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| | ||||||| |||||| ||||||| |||| | || ||| | |||||||| || |
|
|
| T |
6523767 |
cataccaaccaattgcttctttttggtttggacaaagctgtgtgagattgttacttgaaccattgaggcaactaagacactcgtttgtcttaacatcgcc |
6523668 |
T |
|
| Q |
163 |
tctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattgga |
258 |
Q |
| |
|
|||||| || |||| ||||||||||||| ||||||| || | |||||||||||||| |||||||||||||| ||||||||||||||| |||| |
|
|
| T |
6523667 |
tctgcaaagaccaattgcgtttactttgtttgtgttttcaccgtttgagaaattgtagaaaccgtagttgatttgcgtgttggaagtgagagtgga |
6523572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 209 - 306
Target Start/End: Complemental strand, 47777937 - 47777840
Alignment:
| Q |
209 |
gagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagtt |
306 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||||| ||||| |||||||||| ||||||||||| ||| |||||||| || | ||||||||| |
|
|
| T |
47777937 |
gagaaattgtagaaaccgtaattgatttgtgtgttggaaatgagagtggataaaagtgtgttgaggtttgtttcgtaggtgctgtttgttgtgtagtt |
47777840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 309
Target Start/End: Complemental strand, 47772983 - 47772876
Alignment:
| Q |
202 |
gccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtg |
301 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||| || | |||| ||| |||| ||||| || || |||||||| | |||||||||||||| |||| |
|
|
| T |
47772983 |
gccatatgagaaattgtagaaaccgtagttgatttctgtatgagaagaaagactggacaaaagagttttaaggttgttgtcataggtgctattggatgtg |
47772884 |
T |
|
| Q |
302 |
tagttgcc |
309 |
Q |
| |
|
|||||||| |
|
|
| T |
47772883 |
tagttgcc |
47772876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 47778081 - 47778037
Alignment:
| Q |
65 |
taccaaccaatcgcttctttttggtttggacaaagttttgtgaga |
109 |
Q |
| |
|
||||||||||| ||||| |||| |||||||||||||| ||||||| |
|
|
| T |
47778081 |
taccaaccaattgcttcctttttgtttggacaaagttgtgtgaga |
47778037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 67 - 314
Target Start/End: Original strand, 28861785 - 28862032
Alignment:
| Q |
67 |
ccaaccaatcgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctg |
166 |
Q |
| |
|
||||||||| |||||||||||||| ||||| || ||| |||||||||||||||| || ||| |||| |||||| | | || ||||||||||||||| |
|
|
| T |
28861785 |
ccaaccaattgcttctttttggttaggacatttttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctg |
28861884 |
T |
|
| Q |
167 |
cagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaaggg |
266 |
Q |
| |
|
|| | || | ||||| |||||||| ||| || ||| | ||||| |||||||| |||||| |||||| ||||||||||| ||| | |||||||| | |
|
|
| T |
28861885 |
cataatcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtg |
28861984 |
T |
|
| Q |
267 |
tgttgaggttgttttgataggtgctattggctgtgtagttgccattat |
314 |
Q |
| |
|
|||||||||| | |||||| ||||| || ||||||||||||||||| |
|
|
| T |
28861985 |
tgttgaggttttgttgatatgtgctgttttttgtgtagttgccattat |
28862032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 70 - 314
Target Start/End: Original strand, 28856511 - 28856755
Alignment:
| Q |
70 |
accaatcgcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcag |
169 |
Q |
| |
|
|||||| |||||||||| |||||||||| || ||| |||||||||||||||| || ||| |||| |||||| | | || ||||||||||||||||| |
|
|
| T |
28856511 |
accaattgcttcttttttgtttggacaattttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcat |
28856610 |
T |
|
| Q |
170 |
aggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgt |
269 |
Q |
| |
|
| || | ||||| |||||||| ||| || ||| | ||||| |||||||| |||||| |||||| ||||||||||| ||| | |||||||| |||| |
|
|
| T |
28856611 |
aatcctatggcgtatactttgttgttgtcttcgccgaatgagaagttgtagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtgtgt |
28856710 |
T |
|
| Q |
270 |
tgaggttgttttgataggtgctattggctgtgtagttgccattat |
314 |
Q |
| |
|
||||||| | |||||| ||||| || ||||||||||| ||||| |
|
|
| T |
28856711 |
tgaggttttgttgatatgtgctgttttttgtgtagttgctattat |
28856755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 77 - 291
Target Start/End: Original strand, 28831322 - 28831536
Alignment:
| Q |
77 |
gcttctttttggtttggacaaagttttgtgagaagaactcttgaatcattgagataacttcggcaaacgtcaggtttaacatctcctctgcagaggccaa |
176 |
Q |
| |
|
||||||||||||||||||||| || ||| |||||||||||||||| || ||||||| |||||| | | || |||||||||||||| || | || | |
|
|
| T |
28831322 |
gcttctttttggtttggacaattttgtgttagaagaactcttgaattgttaagataacggcggcaatcatttggattaacatctcctctacataatccta |
28831421 |
T |
|
| Q |
177 |
cggcgtttactttgtcagtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttgaggtt |
276 |
Q |
| |
|
||||| |||||||| || || ||| || ||||| |||||||| |||||| |||||| ||||||||||| ||| | |||||||| ||||||||||| |
|
|
| T |
28831422 |
tggcgtatactttgttgttgcctttgccgtatgagaagttgtagaaaccgtaggtgatttctgtgttggaagttagagttgataaaagtgtgttgaggtt |
28831521 |
T |
|
| Q |
277 |
gttttgataggtgct |
291 |
Q |
| |
|
| |||||| ||||| |
|
|
| T |
28831522 |
ttgttgatatgtgct |
28831536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 306
Target Start/End: Original strand, 27371748 - 27371881
Alignment:
| Q |
173 |
ccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaagtgagattggataaaagggtgttga |
272 |
Q |
| |
|
|||| ||| |||| |||||| | || ||||||||| ||||||||||| || |||||||| |||| |||| ||||| || | || ||| |||||| || | |
|
|
| T |
27371748 |
ccaatggcctttattttgtctgggtgttggccatatgagaaattgtaaaaaccgtagttaatttctgtgtgggaagagaaactgtatagaagggttttaa |
27371847 |
T |
|
| Q |
273 |
ggttgttttgataggtgctattggctgtgtagtt |
306 |
Q |
| |
|
||||||| | |||||||||||| |||||||||| |
|
|
| T |
27371848 |
ggttgttgtcgtaggtgctattgactgtgtagtt |
27371881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 311
Target Start/End: Original strand, 1081 - 1243
Alignment:
| Q |
149 |
ggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaag |
248 |
Q |
| |
|
||||| ||||||||||| || || |||| |||||||||||||| |||||| |||||||||| |||| ||||| |||||||| || | ||||||||| |
|
|
| T |
1081 |
ggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaag |
1180 |
T |
|
| Q |
249 |
tgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagttgccat |
311 |
Q |
| |
|
||||| |||||| |||||| |||||||| | || |||||||| |||| ||||||||| |||| |
|
|
| T |
1181 |
tgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccat |
1243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 149 - 311
Target Start/End: Original strand, 8735 - 8897
Alignment:
| Q |
149 |
ggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaacccgtagttgatttgagtgttggaag |
248 |
Q |
| |
|
||||| ||||||||||| || || |||| |||||||||||||| |||||| |||||||||| |||| ||||| |||||||| || | ||||||||| |
|
|
| T |
8735 |
ggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttacgccataagaggaattatagaaaccgtagttaatatctttgttggaag |
8834 |
T |
|
| Q |
249 |
tgagattggataaaagggtgttgaggttgttttgataggtgctattggctgtgtagttgccat |
311 |
Q |
| |
|
||||| |||||| |||||| |||||||| | || |||||||| |||| ||||||||| |||| |
|
|
| T |
8835 |
tgagagtggatagaagggttttgaggtttgtgtggtaggtgctgttggttgtgtagttaccat |
8897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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