View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4672_high_5 (Length: 438)
Name: NF4672_high_5
Description: NF4672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4672_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 38804138 - 38803717
Alignment:
| Q |
1 |
catctttattctatcggagatgtagaaatgtaagcatattttgcttcggtgctttaatcgcgactttggacatgcatttgcatttgacttaagagttgnn |
100 |
Q |
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| T |
38804138 |
catctttattctatcggagatgtagaaatgtaagcatattctgcttcggtgctttaatcgcaactttggacatgcatttgaatt------aagagttgtt |
38804045 |
T |
|
| Q |
101 |
nnnnnatgtgaaacctaaaatctgcagtttctttaggcctaattcttcggccgaatgtataaatttaacaaaaataagaattgtttttcatgtaaaccca |
200 |
Q |
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| T |
38804044 |
tttttatgtgaaacctaaaatctgcagtttctttaggcgtaattcttcggctgaatgtataaatttcacaaaaataagaattgtttttcatgtaaaccca |
38803945 |
T |
|
| Q |
201 |
ttatatacctccttatagcttgcatcactgtgtaaatgtggaagaaaattatccggccttctgcaaaaaattctgctagttgtcaactgccttttattta |
300 |
Q |
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| T |
38803944 |
ttatatacctccttatagcttgcatcaccgtgtaaatgtggaagaaaattatccgaccttctgcaaaaaattctgccagttgtcaactgccttttattta |
38803845 |
T |
|
| Q |
301 |
ttcattaaattgtttttgaacttgtatctgttgggtcgtaagggaagcccgggggatcgtcacattgggacaaaaacaacctcagagaatctggcaccga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38803844 |
ttcattaaattgtttttgaacttgtatctgttgggtcgtaagggaagcccgggggatcgtcacattgggacaaaaacaacctcagagaatctggcaccaa |
38803745 |
T |
|
| Q |
401 |
atatttacacatagcatctatccctttg |
428 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
38803744 |
atatttacacatagcatctatccctttg |
38803717 |
T |
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