View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4672_high_7 (Length: 407)
Name: NF4672_high_7
Description: NF4672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4672_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 34303756 - 34304144
Alignment:
| Q |
1 |
agggagccattcctgcacttccaactgctgaagaggctcagaaatttatttccagctctaaagccaaataagaacttgcaaatgctttgaaatttgatga |
100 |
Q |
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| T |
34303756 |
agggagccattcctgcacttccaactgctgaagaggctcagaaatttatttccagctctaaagccaaataagaacttgcaaatgctttgaaatttgatga |
34303855 |
T |
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| Q |
101 |
tggtccagaggactagctatattaattttcatttgagagatttttcctttaataagaccttcatacaatgacttataaagtgttgtttctatttatgaat |
200 |
Q |
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| T |
34303856 |
tggtccagaggactagctatattcattttcatttgagagttttttcctttaataagaccttcatacaatgacttataaagtgttgtttctatttatgaat |
34303955 |
T |
|
| Q |
201 |
aataataaacaacttatttttgtttcttatcataattagcactaataacataaaatattttattatattgtgcaagttaatgaaacaggttagagcctaa |
300 |
Q |
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| T |
34303956 |
aataataaacaacttatttttgtttcttatcatagttagcactaataacataaaatattttattatattgtgcaagttaatgaaacaggttagagccta- |
34304054 |
T |
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| Q |
301 |
tatatatataaaataaaacaggttagagttcgtgtggaaaatcttgacattataatacaacacagaagacaatattcaatgacaatataat |
391 |
Q |
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| T |
34304055 |
-atatatataaaataaaacaggttagagttcgtgtggaaaatcttgacattataacacaacacagaagacaatattcaatgacaatataat |
34304144 |
T |
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