View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4672_high_9 (Length: 398)
Name: NF4672_high_9
Description: NF4672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4672_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 347
Target Start/End: Complemental strand, 33121706 - 33121376
Alignment:
| Q |
17 |
atgaagccaggttcatggactcaacaaggtgttcctattactctcctcgagaataagatgagtagagtttttgctgcacctcctaaagaaagaacaaagg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33121706 |
atgaagccaggttcatggactcaacaaggtgttcctattactctcctcgagaataagatgagtagagtttttgctgcacctcctaaagaaagaacaaagg |
33121607 |
T |
|
| Q |
117 |
ctttttataacacaccaccttcaaaatatgaaatcattgatcaggttagaacgacgagtttcattttgatacaatattttttacacaatcaatcaatcat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33121606 |
ctttttataacacaccaccttcaaaatatgaaatcattgatcaggttagaacgacgagtttcattttgatacaatattttttacacaatcaatcaatcat |
33121507 |
T |
|
| Q |
217 |
aagctgtcacattattgaaaatgatccttacacagacaatgcataccaattaaattctagaatgacttacattgtggacatgtgacgaacaaaacatttg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33121506 |
aagctgtcacattattgaaaatgatccttacacagacaatgcataccaattaaattctagaatgacttacattgtggacatgtgacgaacaaaacatttg |
33121407 |
T |
|
| Q |
317 |
gaatttttcatgtaccatatttagtgaagcc |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33121406 |
gaatttttcatgtaccatatttagtgaagcc |
33121376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University