View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4672_low_13 (Length: 305)
Name: NF4672_low_13
Description: NF4672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4672_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 45271178 - 45271455
Alignment:
| Q |
14 |
caacaacaacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttg |
113 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271178 |
caacaacagcattaggcctaatatttgctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttg |
45271277 |
T |
|
| Q |
114 |
atcatcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcaca |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45271278 |
atcgtcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcaca |
45271377 |
T |
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| Q |
214 |
atgtcaagggcaacggcggtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcatctca |
291 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45271378 |
atgtcaagggcaacggctgtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttctca |
45271455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 45282952 - 45283229
Alignment:
| Q |
14 |
caacaacaacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttg |
113 |
Q |
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|||||||| |||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45282952 |
caacaacagcattaggcataatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcagaagaagagatccatgaagggtatccttg |
45283051 |
T |
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| Q |
114 |
atcatcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcaca |
213 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45283052 |
atcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcaca |
45283151 |
T |
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| Q |
214 |
atgtcaagggcaacggcggtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcatctca |
291 |
Q |
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|||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
45283152 |
atgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctca |
45283229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 45274711 - 45274988
Alignment:
| Q |
14 |
caacaacaacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttg |
113 |
Q |
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|||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
45274711 |
caacaacagcattaggcctaatatttgctctccaattttttcgttgcattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttg |
45274810 |
T |
|
| Q |
114 |
atcatcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcaca |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45274811 |
atcgtcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcaca |
45274910 |
T |
|
| Q |
214 |
atgtcaagggcaacggcggtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcatctca |
291 |
Q |
| |
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|||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||| ||| ||||| |
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| T |
45274911 |
atgtcaagggcaaccgcggtgatcttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttctca |
45274988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 45294340 - 45294617
Alignment:
| Q |
14 |
caacaacaacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttg |
113 |
Q |
| |
|
|||||||| |||||| || || |||| |||||||||| |||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
45294340 |
caacaacagcattagccccaacatttgctctccatccgtttcctttcattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttg |
45294439 |
T |
|
| Q |
114 |
atcatcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcaca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45294440 |
atcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcaca |
45294539 |
T |
|
| Q |
214 |
atgtcaagggcaacggcggtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcatctca |
291 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||| |||||||||||| | |||||||||||||||||| ||||| |
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| T |
45294540 |
atgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctca |
45294617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 291
Target Start/End: Original strand, 45303300 - 45303577
Alignment:
| Q |
14 |
caacaacaacattaggcctaatattttctctccatccttttcgttgcattttagccaaaagcttgcgaccagaagaagagatccatgaagggtatccttg |
113 |
Q |
| |
|
|||||||| |||||| || || |||| |||||||||| |||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
45303300 |
caacaacagcattagccccaacatttgctctccatccgtttcctttcattttagccaaaagcttgcgatcagaagcagagatccatgaagggtatccttg |
45303399 |
T |
|
| Q |
114 |
atcatcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagacaaaccagtcaca |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45303400 |
atcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggaggatgtcggacaaaccagtcaca |
45303499 |
T |
|
| Q |
214 |
atgtcaagggcaacggcggtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcatctca |
291 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||| |||||||||||| | |||||||||||||||||| ||||| |
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| T |
45303500 |
atgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctca |
45303577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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