View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4672_low_6 (Length: 433)
Name: NF4672_low_6
Description: NF4672
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4672_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 43310513 - 43310108
Alignment:
| Q |
18 |
catggtgttgcgggcttgaggttgaaatatattaatttgtttcattttgaaatgaggtagtatactgtaacacaaaatgtagagaatgatttaattccag |
117 |
Q |
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| T |
43310513 |
catggtgttgcgggcttgaggttgaaatatattaatttgtttcattttgaaatgaggtagtatactgtaacacaaaatgtagagaatgatttaattccag |
43310414 |
T |
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| Q |
118 |
caagcaaaaacctttgtggctaaattaaagataagtttaaggaagaggattannnnnnnnnnnnnnnnggtagaggaagaggattatttaattacactcc |
217 |
Q |
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| T |
43310413 |
caagcaaaaacctttgtggctaaattaaagataagtttaaggaagaggattatttttatttttattttggtagaggaagaggattatttaattacactcc |
43310314 |
T |
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| Q |
218 |
attgcaacataattaatcagcaaccaaagagatttctgagaataatcaaaataacaattgtcatagtaagatcttttctcagaacagaatgctgcggctt |
317 |
Q |
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| T |
43310313 |
attgcaacataattaatcagcaaccaaagagatttctgagaataatcaaaataacaattgtcatagtaagatcttttctcagaacagaatgctgcggctt |
43310214 |
T |
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| Q |
318 |
tcatctttttaataaaatcctcacatttctttttcaattcctctgatcttcatcaattatcacaaaggcattttattttcctcttcttcatctttttctg |
417 |
Q |
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| T |
43310213 |
tcatctttttaataaaatcctcacatttcttgttcaattcctctgatcttcatcaattatcacaaaggcattttattttcctcttcttcatctttttctg |
43310114 |
T |
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| Q |
418 |
cctttg |
423 |
Q |
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| T |
43310113 |
cttttg |
43310108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 378
Target Start/End: Complemental strand, 43168062 - 43167994
Alignment:
| Q |
314 |
gctttcatctttttaataaaatcctcacatttctttttcaattcctctg----atcttcatcaattatc |
378 |
Q |
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| T |
43168062 |
gctttcatctttttgataaaatcctcacatttcttgtttaattcttctgtttcatcttcatcaattatc |
43167994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 357
Target Start/End: Original strand, 43175144 - 43175187
Alignment:
| Q |
314 |
gctttcatctttttaataaaatcctcacatttctttttcaattc |
357 |
Q |
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| T |
43175144 |
gctttcatcttttttataaaatcctcacatttcttgttcaattc |
43175187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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