View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4673-Insertion-1 (Length: 1006)
Name: NF4673-Insertion-1
Description: NF4673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4673-Insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 537 - 1005
Target Start/End: Complemental strand, 6706082 - 6705614
Alignment:
| Q |
537 |
tggcttcaattaagcataggtaatacggccgtgaccacaaccacgaaacatggtcgtgatcataaccagactccaacaagcagttcaggcttgttggagc |
636 |
Q |
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| T |
6706082 |
tggcttcaattaagcataggtaatacggccgtgaccacaaccacgaaacatggtcgtgatcataaccagactccaacaagcagttcaggcttgctggagc |
6705983 |
T |
|
| Q |
637 |
ttgagttgttaccaacaaattgggctgcttcgcggcccaatttggagcaaccatcgaccagaggttgctcaaattttaattcttctttgtttttcgaaca |
736 |
Q |
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| T |
6705982 |
ttgagttgttaccaacaaattgggctgcttcgcggcccaatttggagcaaccatcgaccagaggttgctcaaattttaattcttctttgttttttgaaca |
6705883 |
T |
|
| Q |
737 |
aacgacatcttcctcatcttcttcgtccttgtccatatctatgtcaatgccaagtggtccaacctatggtcatcaacaacaacatcaacatctagtacca |
836 |
Q |
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| T |
6705882 |
aacgacatcttcctcatcttcttcgtccttgtccatatctatgtcaatgccaagtggtccaacctatggtcatcaacaacaacatcaacatctagtacca |
6705783 |
T |
|
| Q |
837 |
cataactgggcatttggtccattattaccacactcaatggcaattaatatgccttcttctacagcttatgttccatcttcttctttatcacaatcttgtt |
936 |
Q |
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| T |
6705782 |
cataactgggcatttggtccattattaccacactcaatggcaattaatatgccttcttctacatcttatattccatcttcttctttatcacaatcttgtt |
6705683 |
T |
|
| Q |
937 |
cttctttaagggcatctttaggacctaattattatcctcaatatcatcatgcatcaccctttcactttc |
1005 |
Q |
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| T |
6705682 |
cttctttaaggccatctttaggacctaattattatcctcaatatcatcatgcatcaccctttcactttc |
6705614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 154 - 464
Target Start/End: Complemental strand, 6706465 - 6706155
Alignment:
| Q |
154 |
tcatcatcatccatggcttgttttgagaattgttcaatatgaccatggttccttctcaaagtagcaaacaaaattacaaaactataaatggtgattatgt |
253 |
Q |
| |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6706465 |
tcatcattatccatggcttgttttgagatttgttcaatatgaccatggttccttctcaaagtagcaaacaaaattacaaaactataaatggtgattatgt |
6706366 |
T |
|
| Q |
254 |
tttctacaacaac---tcaacaagtgctatgaaccaatttccatttgttgaagactatagcacctacaataattgtttaagatctgaattttttgtgagg |
350 |
Q |
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| T |
6706365 |
tttctacaacaacaactcaacaagtgctatgaaccaatttcaatttgttgaagactatagcacctacaataattgtttaagatctgaattttttgtgagg |
6706266 |
T |
|
| Q |
351 |
ccaatggctgaagaagaggaatcatcatcatcaagacttaacactatcaccaccactactcatcacaacgaacttgaacccgaacccgaaggagaaacca |
450 |
Q |
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| T |
6706265 |
ccaatggctgaagaagaggaatcatc---atcaagactcaacactatcaccaccactactcatcacaacgaacttgaacccgaacccgaaggagaaacca |
6706169 |
T |
|
| Q |
451 |
tttcaacctcaaag |
464 |
Q |
| |
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|||||||||||||| |
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| T |
6706168 |
tttcaacctcaaag |
6706155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 6706608 - 6706502
Alignment:
| Q |
8 |
gctaccatgttactattaataagtcttctctttgttcatcatgatcatgatattgttgatgatgtcaaatccctctaactcacaatataaactcaagatt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6706608 |
gctaccatgttactattaataagtcttctctttgttcatcatgatcatgatattgttgatgatgtcaaatccctctaactcacaatataaactcaagatt |
6706509 |
T |
|
| Q |
108 |
caaaacc |
114 |
Q |
| |
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||||||| |
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| T |
6706508 |
caaaacc |
6706502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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