View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4673-Insertion-2 (Length: 915)

Name: NF4673-Insertion-2
Description: NF4673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4673-Insertion-2
NF4673-Insertion-2
[»] chr2 (2 HSPs)
chr2 (112-915)||(8797258-8798066)
chr2 (8-82)||(8798096-8798170)


Alignment Details
Target: chr2 (Bit Score: 722; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 112 - 915
Target Start/End: Complemental strand, 8798066 - 8797258
Alignment:
Q  112 cttgcttgttctcttgtctctcactccactgcttttgtatggcaggggtatcagtggcagtgcagaaaaaggaaggtagagttttcattgggaaggtaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8798066 cttgcttgttctcttgtctctcactccactgcttttgtatggcaggggtatcagtggcagtgcagaaaaaggaaggtagagttttcattgggaaggtaaa 8797967  T
Q  212 accnnnnnnnggcaccaatgcctcacactaacccttcttctgtaactcaaccttcatctctctctctacataccccgcgtgcactctactgctttctcgc 311  Q
    |||       ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  8797966 acctttttttggcaccaatgcttcacactaacccttcttctgtaactcaaccttcatctctctctctacatatcccgcgtgcactctactgctttctcac 8797867  T
Q  312 tccttcataaaaaaccttgtattatccactagctagagagacaaagagagattcatttcttcattaaatgctgaaaatgtgtggaaagagagattaacac 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8797866 tccttcataaaaaaccttgtattatccactagctagagagacaaagagagattcatttcttcattaaatgctgaaaatgtgtggaaagagagattaacac 8797767  T
Q  412 tcattttccaaaggaaatctgtgcaggcttttgccagtagtagaatccaaaaaacctcttcactacttcttcatgtaactgactgtaactatacaacata 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8797766 tcattttccaaaggaaatctgtgcaggcttttgccagtagtagaatccaaaaaacctcttcactacttcttcatgtaactgactgtaactatacaacata 8797667  T
Q  512 gccaccacaaaacactatcactatttatgtttttctgtaaaaaagcctgttacttttttaccataaaacccgggcgggtgacccttgtgtgaaacaaaaa 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8797666 gccaccacaaaacactatcactatttatgtttttctgtaaaaaagcctgttacttttttaccataaaacccgggcgggtgacccttgtgtgaaacaaaaa 8797567  T
Q  612 catcttcaatattaatatcattcattcaagtgagagaaagaaaaatctgacctagaaggcaaaaagggtaataaaaaggaagtgttattgtggcta---- 707  Q
    ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  8797566 catcttcaatattaatatca----ttcaagtgagagaaagaaaaatctgacctagaaggcaaaaagggtaataaaaaggaagtgttattgtggctaagtg 8797471  T
Q  708 ----agtgagtgagtattaattcaatggagggtagttctaatggaagttgttcttatgtgatgggtgcttttggagaaaacagtggtgggctatgtcctc 803  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8797470 agtgagtgagtgagtattaattcaatggagggtagttctaatggaagttgttcttatgtgatgggtgcttttggagaaaacagtggtgggctatgtcctc 8797371  T
Q  804 caatgatgatgatgcctttagtcacttcatctcatcataatgctcatcatccaataaattccaataacaacaatactaatgcaaac-acacaaccggtct 902  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8797370 caatgatgatgatgcctttagtcacttcatctcatcataatgctcatcatccaataaattccaataacaacaatactaatgcaaacaacacaaccggtct 8797271  T
Q  903 tttctttcctatc 915  Q
    |||| ||||||||    
T  8797270 tttccttcctatc 8797258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 8798170 - 8798096
Alignment:
Q  8 agtagtagtaggtaacttgttttctcctcctcgatttgatcgttcctagctcactatttattactacctctctcc 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8798170 agtagtagtaggtaacttgttttctcctcctcgatttgatcgttcctagctcactatttattactacctctctcc 8798096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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