View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4673-Insertion-3 (Length: 897)

Name: NF4673-Insertion-3
Description: NF4673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4673-Insertion-3
NF4673-Insertion-3
[»] chr7 (9 HSPs)
chr7 (164-897)||(38037400-38038130)
chr7 (8-81)||(38038213-38038286)
chr7 (31-80)||(29390490-29390539)
chr7 (20-77)||(30181637-30181694)
chr7 (27-81)||(32358703-32358757)
chr7 (27-81)||(34923027-34923081)
chr7 (31-80)||(1401171-1401220)
chr7 (27-80)||(14691238-14691291)
chr7 (27-80)||(33204928-33204981)
[»] chr5 (10 HSPs)
chr5 (207-447)||(10625335-10625573)
chr5 (350-444)||(10625754-10625847)
chr5 (20-78)||(35083326-35083384)
chr5 (27-80)||(6125380-6125433)
chr5 (27-80)||(24030308-24030361)
chr5 (36-81)||(29136764-29136809)
chr5 (27-80)||(40452416-40452469)
chr5 (27-80)||(41059728-41059781)
chr5 (15-80)||(1943077-1943142)
chr5 (27-80)||(5559858-5559911)
[»] chr4 (12 HSPs)
chr4 (27-80)||(34526276-34526329)
chr4 (30-80)||(11256600-11256650)
chr4 (15-80)||(9153521-9153586)
chr4 (37-80)||(35405787-35405830)
chr4 (27-81)||(488322-488376)
chr4 (27-80)||(897064-897117)
chr4 (27-80)||(18630834-18630887)
chr4 (27-80)||(22273874-22273927)
chr4 (27-80)||(29877733-29877786)
chr4 (27-80)||(36254975-36255028)
chr4 (15-80)||(36740986-36741051)
chr4 (31-80)||(48667768-48667817)
[»] chr2 (7 HSPs)
chr2 (27-80)||(4027019-4027072)
chr2 (33-80)||(37420006-37420053)
chr2 (15-81)||(7480837-7480903)
chr2 (27-80)||(8832551-8832604)
chr2 (27-80)||(29774839-29774892)
chr2 (27-80)||(36501454-36501507)
chr2 (27-80)||(38216113-38216166)
[»] chr6 (7 HSPs)
chr6 (13-80)||(10755222-10755289)
chr6 (28-80)||(35071367-35071419)
chr6 (41-80)||(12816840-12816879)
chr6 (29-79)||(3210929-3210979)
chr6 (15-80)||(6752894-6752959)
chr6 (20-81)||(12817046-12817107)
chr6 (27-80)||(23239341-23239394)
[»] chr8 (4 HSPs)
chr8 (27-80)||(32131534-32131587)
chr8 (15-80)||(32212954-32213019)
chr8 (27-80)||(10213789-10213842)
chr8 (31-80)||(28879153-28879202)
[»] chr1 (7 HSPs)
chr1 (27-80)||(28690098-28690151)
chr1 (27-80)||(48819393-48819446)
chr1 (28-80)||(47413467-47413519)
chr1 (29-80)||(19220269-19220320)
chr1 (27-80)||(9572723-9572776)
chr1 (15-72)||(16888913-16888970)
chr1 (27-76)||(41003481-41003530)
[»] chr3 (3 HSPs)
chr3 (30-80)||(31787619-31787669)
chr3 (30-80)||(46573393-46573443)
chr3 (27-80)||(52895344-52895397)


Alignment Details
Target: chr7 (Bit Score: 683; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 164 - 897
Target Start/End: Complemental strand, 38038130 - 38037400
Alignment:
Q  164 gtagccatgatcatagattaaggcacaaactttaatgttgaggcaactttgatgaaaagatgctgggcaactatcgcagcaaatcaactctcctccgtct 263  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  38038130 gtagccatgatcatagattaaggcacaaactttaatgttgagacaactttgatgaaaagctgctggacaactatcgcagcaaatcaactctcctccgtct 38038031  T
Q  264 ttacaaacaccacatgactcttcgttaaggtctttatacactctctcaggttccagattcattttgataaaaaatccttagctctctacaaaacaactaa 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38038030 ttacaaacaccacatgactcttcgttaaggtctttatacactctctcaggttccggattcattttgataaaaaatccttagctctctacaaaacaactaa 38037931  T
Q  364 taaatttaattagcattaacgaaaacaaacaaatgcataacaataaatcaacttaaatttcaagaaaaaagcttacatgaaccaaaaagagtggtctatg 463  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38037930 taaatttaattagcgttaacgaaaacaaacaaatgcataacaataaatcaatttaaatttcaagaaaaaagcttacatgaaccaaaaagagtggtctatg 38037831  T
Q  464 aatggtgttttgatcttgtagattgtattggtagaagtaggcacccttcctcttgggatcttctttgctgtttcaaaataaaaccagagagatgattttt 563  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38037830 aatggtgttttgatcttgtagattgtattggtagaagtaggcacccttcctcttgggatcttctttgctgtttcaaaataaaaccagagagatgattttt 38037731  T
Q  564 tgtttgttttaaacacacaagttttaaattgagaaagaaatacaagaggtattccaacacaaaacctaattcgaataaaaaagaaagcaaataaggagga 663  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38037730 tgtttgttttaaacacacaagttttaaattgagaaagaaatacaagaggtattccaacacaaaacctaattcgaataaaaaagaaagcaaataaggagga 38037631  T
Q  664 gggacgcgactcttgcaaaattggccctaatgagaaaaaatcaattccattaattgttgaagaatctgacactaatgtagaagataagcttattttttga 763  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||  ||||||    
T  38037630 gggacgcgactcttgcaaaattggccctaatgagaaaaaatcaattccattaattgttgaa-attctgacactaatgtagaagataagctta--ttttga 38037534  T
Q  764 tgttctaaacacccaaaacagtgaatgccaaactaaatctaaatcttgcttacatcgaagtcaagccctaaatgaacataaaagtgaaaaataacttgaa 863  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38037533 tgttctaaacacccaaaacagtgaatgccaaactaaatctaaatcttgcttacatcgaagtcaagccctaaatgaacataaaagtgaaaaataacttgaa 38037434  T
Q  864 caaattggagacgtgatcaaactcccatctcaat 897  Q
    |||||||||||||||| |||||||||||||||||    
T  38037433 caaattggagacgtgaccaaactcccatctcaat 38037400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 38038286 - 38038213
Alignment:
Q  8 aagataaacaagtttcatgagtgagaaattattaattaacataatcgcttatttatttgcataaactatttttt 81  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  38038286 aagataaacaagtttcatgagtgagaaattatgaattaacgtaatcgcttatttatttgcataaactatttttt 38038213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 29390539 - 29390490
Alignment:
Q  31 agaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||| |||| |||||||||||  |||||||||||||||||||||||||||    
T  29390539 agaatttatgaattaacataaaagcttatttatttgcataaactattttt 29390490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 30181637 - 30181694
Alignment:
Q  20 tttcatgagtgagaaattattaattaacataatcgcttatttatttgcataaactatt 77  Q
    |||||| |||| ||| |||| |||||||||||  ||||||||||||||||||||||||    
T  30181637 tttcattagtgggaacttatgaattaacataaaagcttatttatttgcataaactatt 30181694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 32358703 - 32358757
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactatttttt 81  Q
    |||||||| |||| |||||||||||  ||||||||| ||||||||| ||||||||    
T  32358703 agtgagaacttataaattaacataaaagcttatttacttgcataaattatttttt 32358757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 34923027 - 34923081
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactatttttt 81  Q
    |||||||| |||| || ||||||||  |||||||||||||||||| |||||||||    
T  34923027 agtgagaacttatgaactaacataaaagcttatttatttgcataagctatttttt 34923081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 1401171 - 1401220
Alignment:
Q  31 agaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||| |||| |||||||||||  |||||||||||||||| ||||||||||    
T  1401171 agaacttatgaattaacataaaagcttatttatttgcatgaactattttt 1401220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 14691291 - 14691238
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||||||||||  | |||||||||||||| ||||||||||    
T  14691291 agtgagaacttatgaattaacataaaaggttatttatttgcatgaactattttt 14691238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 33204928 - 33204981
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||||||||||  ||||||||||||||||||  |||||||    
T  33204928 agtgagaacttatgaattaacataaaagcttatttatttgcataagatattttt 33204981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 1e-43; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 207 - 447
Target Start/End: Complemental strand, 10625573 - 10625335
Alignment:
Q  207 caactttgatgaaaagatgctggg-caactatcgcagcaaatcaactctcctccgtctttacaaacaccacatgactcttcgttaaggtctttatacact 305  Q
    |||||||||||||||| ||   || |||||||| |||||||| || ||||| ||||||  ||||||||||||||| || || ||||  |  |||||||||    
T  10625573 caactttgatgaaaagctgggaggacaactatcacagcaaattaaatctcc-ccgtctccacaaacaccacatgaatcatcattaaaattcttatacact 10625475  T
Q  306 ctctcaggttccagattcattttgataaaaaatccttagctctctacaaaacaactaataaatttaattagcattaacgaaaacaaacaaatgcataaca 405  Q
    |||| || |  || || ||||||||||| |  |||||||| ||||||||||||| || |||||||| ||||| |||||||||||||| ||||||||||||    
T  10625474 ctctgagatgacatatccattttgataaga--tccttagccctctacaaaacaattagtaaatttagttagcgttaacgaaaacaaataaatgcataaca 10625377  T
Q  406 ataaatcaacttaaatttcaagaaaaaagcttacatgaacca 447  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  10625376 ataaatcaatttaaatttcacgaaaaaagcttacatgaacca 10625335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 350 - 444
Target Start/End: Original strand, 10625754 - 10625847
Alignment:
Q  350 tacaaaacaactaataaatttaattagcattaacgaaaacaaacaaatgcataacaataaatcaacttaaatttcaagaaaaaagcttacatgaa 444  Q
    |||||||||||||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||| |||||||||| | ||||||||||||||||    
T  10625754 tacaaaacaactaataaatttagttagcgttaatgaaaacaaataaatgcataacaataaatcaatttaaatttcatg-aaaaagcttacatgaa 10625847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 35083326 - 35083384
Alignment:
Q  20 tttcatgagtgagaaattattaattaacataatcgcttatttatttgcataaactattt 78  Q
    |||||| |||||||| |||| |||||||||||  |||||||||||||||||||||||||    
T  35083326 tttcatcagtgagaacttatgaattaacataaaagcttatttatttgcataaactattt 35083384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 6125380 - 6125433
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    ||||||||||||| |||||| ||||  |||||||||||||||||| ||||||||    
T  6125380 agtgagaaattatgaattaatataaaagcttatttatttgcataagctattttt 6125433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 24030308 - 24030361
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||||||||||  |||||||||||||||||| ||||||||    
T  24030308 agtgagaacttatgaattaacataaaagcttatttatttgcataagctattttt 24030361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 29136809 - 29136764
Alignment:
Q  36 ttattaattaacataatcgcttatttatttgcataaactatttttt 81  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||    
T  29136809 ttatgaattaacataaaagcttatttatttgcataaactatttttt 29136764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 40452469 - 40452416
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| ||| |||||||| |||||||||||||||||| ||||||||    
T  40452469 agtgagaacttatgaataaacataatagcttatttatttgcataagctattttt 40452416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 41059781 - 41059728
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||||||||||  ||||||||||||||||||||| |||||    
T  41059781 agtgagaacttatgaattaacataaaagcttatttatttgcataaactgttttt 41059728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 1943077 - 1943142
Alignment:
Q  15 acaagtttcatgagtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||| |||||| |||||||| |||| ||||| |||||  |||||||||||||||||| | ||||||    
T  1943077 acaattttcattagtgagaacttatgaattagcataaaagcttatttatttgcataagccattttt 1943142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 5559911 - 5559858
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||| ||||||  |||||||||||||||||| ||||||||    
T  5559911 agtgagaatttatgaatttacataaaagcttatttatttgcataagctattttt 5559858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 34526329 - 34526276
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||||||||||  |||||||||||||||||||||||||||    
T  34526329 agtgagaacttatgaattaacataaaagcttatttatttgcataaactattttt 34526276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 11256650 - 11256600
Alignment:
Q  30 gagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    ||||| |||| |||||||||||  |||||||||||||||||||||||||||    
T  11256650 gagaacttatgaattaacataaaagcttatttatttgcataaactattttt 11256600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 9153586 - 9153521
Alignment:
Q  15 acaagtttcatgagtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||| |||||| |||||||| |||| |||||||||||  | |||||||||||||||| ||||||||    
T  9153586 acaattttcatcagtgagaatttataaattaacataaaagtttatttatttgcataagctattttt 9153521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 35405787 - 35405830
Alignment:
Q  37 tattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||||||||||  |||||||||||||||||| ||||||||    
T  35405787 tattaattaacataaaagcttatttatttgcataagctattttt 35405830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 488376 - 488322
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactatttttt 81  Q
    |||||||| |||| |||||||||||  |||||||||||| ||||| |||||||||    
T  488376 agtgagaacttatgaattaacataaaagcttatttatttccataagctatttttt 488322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 897064 - 897117
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    ||||| || |||| |||||| ||||  |||||||||||||||||||||||||||    
T  897064 agtgaaaacttataaattaatataaaagcttatttatttgcataaactattttt 897117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 18630887 - 18630834
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||||| ||||  |||||||||||||||||| ||||||||    
T  18630887 agtgagaacttatgaattaatataaaagcttatttatttgcataagctattttt 18630834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 22273874 - 22273927
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||||||||||  | |||||||||||||||| ||||||||    
T  22273874 agtgagaagttatgaattaacataaaagtttatttatttgcataatctattttt 22273927  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 29877733 - 29877786
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||||||||||  |||||| ||||||||||| ||||||||    
T  29877733 agtgagaacttatgaattaacataaaagcttatatatttgcataagctattttt 29877786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 36255028 - 36254975
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||||||||||  |||||||||| ||||||| ||||||||    
T  36255028 agtgagaacttatgaattaacataaaagcttatttatctgcataagctattttt 36254975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 36740986 - 36741051
Alignment:
Q  15 acaagtttcatgagtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||| |||||| |||||||| |||| ||| |||| ||  |||||||||||||||||| ||||||||    
T  36740986 acaattttcattagtgagaacttatgaatcaacacaaaagcttatttatttgcataagctattttt 36741051  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 48667768 - 48667817
Alignment:
Q  31 agaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||| |||| |||||||||||  |||||||||||||||||| ||||||||    
T  48667768 agaacttatgaattaacataaaagcttatttatttgcataagctattttt 48667817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 4027019 - 4027072
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||||||||||| |||||||||||||||||| ||||||||    
T  4027019 agtgagaacttatgaattaacataatagcttatttatttgcataagctattttt 4027072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 37420006 - 37420053
Alignment:
Q  33 aaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    ||||||| |||||||||||  ||||||||||||||||||| |||||||    
T  37420006 aaattatgaattaacataaaagcttatttatttgcataaattattttt 37420053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 7480903 - 7480837
Alignment:
Q  15 acaagtttcatgagtgagaaattattaattaacataatcgcttatttatttgcataaactatttttt 81  Q
    |||| |||||| ||| |||| |||| |||||||||||   ||||||||||||||||| |||||||||    
T  7480903 acaattttcattagtcagaacttatgaattaacataaaaacttatttatttgcataatctatttttt 7480837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 8832551 - 8832604
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    ||||| || |||| |||||||||||  |||||||||||||||||| ||||||||    
T  8832551 agtgaaaacttatgaattaacataaaagcttatttatttgcataagctattttt 8832604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 29774839 - 29774892
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| ||||||| |||  |||||||||||||| ||||||||||||    
T  29774839 agtgagaacttatgaattaacgtaaaagcttatttatttgcttaaactattttt 29774892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 36501507 - 36501454
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| | || |||||||||||  |||||||||||||||||| ||||||||    
T  36501507 agtgagaactcatgaattaacataaaagcttatttatttgcataagctattttt 36501454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 38216113 - 38216166
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| | |||||||||  |||||||||||||||||| ||||||||    
T  38216113 agtgagaacttatgagttaacataaaagcttatttatttgcataagctattttt 38216166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 10755289 - 10755222
Alignment:
Q  13 aaacaagtttcatgagtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||| |||| | ||| |||| |||| |||||||||||  |||||||||||||||||||||||||||    
T  10755289 aaacaattttcgttagtaagaacttatgaattaacataaaagcttatttatttgcataaactattttt 10755222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 35071419 - 35071367
Alignment:
Q  28 gtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    ||||||| |||| |||||||||||  |||||||||||||||||| ||||||||    
T  35071419 gtgagaacttatgaattaacataaaagcttatttatttgcataagctattttt 35071367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 80
Target Start/End: Complemental strand, 12816879 - 12816840
Alignment:
Q  41 aattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||||||  |||||||||||||||||||||||||||    
T  12816879 aattaacataaaagcttatttatttgcataaactattttt 12816840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 3210979 - 3210929
Alignment:
Q  29 tgagaaattattaattaacataatcgcttatttatttgcataaactatttt 79  Q
    |||||| |||| |||||||||||  |||||||||||||||||| |||||||    
T  3210979 tgagaacttatgaattaacataaaagcttatttatttgcataagctatttt 3210929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 6752894 - 6752959
Alignment:
Q  15 acaagtttcatgagtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||| |||||| |||||| | |||| |||||| ||||  |||||||||||||||||| ||||||||    
T  6752894 acaattttcattagtgaggatttatgaattaatataaaagcttatttatttgcataagctattttt 6752959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 12817107 - 12817046
Alignment:
Q  20 tttcatgagtgagaaattattaattaacataatcgcttatttatttgcataaactatttttt 81  Q
    |||||| ||||| ||  ||| |||||||||||  |||||||||||||||||| |||||||||    
T  12817107 tttcattagtgaaaacatataaattaacataaaagcttatttatttgcataagctatttttt 12817046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 23239341 - 23239394
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||||| ||||  |||||||||||||||||| ||||||||    
T  23239341 agtgagaacttatgaattaatataaaagcttatttatttgcataagctattttt 23239394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 32131534 - 32131587
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||||||||||  |||||| ||||||||||||||||||||    
T  32131534 agtgagaacttatgaattaacataaaagcttatctatttgcataaactattttt 32131587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 32213019 - 32212954
Alignment:
Q  15 acaagtttcatgagtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||| |||||| |||||||| |||| || ||||||||  |||||||||||||||||| ||||||||    
T  32213019 acaattttcattagtgagaacttataaaataacataaaagcttatttatttgcataagctattttt 32212954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 10213789 - 10213842
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| ||||||||||   |||||||||||||||||| ||||||||    
T  10213789 agtgagaacttatgaattaacatacaagcttatttatttgcataagctattttt 10213842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 28879153 - 28879202
Alignment:
Q  31 agaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||| |||| |||||||||||  |||||||||||||||||| ||||||||    
T  28879153 agaacttatgaattaacataaaagcttatttatttgcataagctattttt 28879202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 28690098 - 28690151
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    ||||||||||| | |||||||||||  |||||||||||||||||| ||||||||    
T  28690098 agtgagaaattctgaattaacataaaagcttatttatttgcataagctattttt 28690151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 48819393 - 48819446
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||||||||||  |||||||||||||||||| ||||||||    
T  48819393 agtgagaacttatgaattaacataaaagcttatttatttgcataagctattttt 48819446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 47413467 - 47413519
Alignment:
Q  28 gtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||| ||||||| |||||||||||  |||||||||||||||||| ||||||||    
T  47413467 gtgaaaaattataaattaacataaaagcttatttatttgcataagctattttt 47413519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 19220269 - 19220320
Alignment:
Q  29 tgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    ||||| ||||| |||||| ||||  |||||||||||||||||||||||||||    
T  19220269 tgagagattataaattaaaataaaagcttatttatttgcataaactattttt 19220320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 9572776 - 9572723
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||||| ||||  |||||||||||||||||| ||||||||    
T  9572776 agtgagaacttatgaattaatataaaagcttatttatttgcataagctattttt 9572723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 16888970 - 16888913
Alignment:
Q  15 acaagtttcatgagtgagaaattattaattaacataatcgcttatttatttgcataaa 72  Q
    |||| |||||| |||||||| |||| | |||||||||  |||||||||||||||||||    
T  16888970 acaattttcattagtgagaatttatgacttaacataaaagcttatttatttgcataaa 16888913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 41003481 - 41003530
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactat 76  Q
    |||||||| ||||||||||||||||  | |||||||||||| ||||||||    
T  41003481 agtgagaacttattaattaacataaaagtttatttatttgcttaaactat 41003530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 31787619 - 31787669
Alignment:
Q  30 gagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    ||||| |||| |||||| |||| || |||||||||||||||||||||||||    
T  31787619 gagaacttatgaattaatataaacgtttatttatttgcataaactattttt 31787669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 46573443 - 46573393
Alignment:
Q  30 gagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    ||||| |||| |||||||||||  |||||||||||||||||| ||||||||    
T  46573443 gagaatttatgaattaacataaaagcttatttatttgcataagctattttt 46573393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 52895397 - 52895344
Alignment:
Q  27 agtgagaaattattaattaacataatcgcttatttatttgcataaactattttt 80  Q
    |||||||| |||| |||||||||||  |||||||||||||| ||||| ||||||    
T  52895397 agtgagaatttatgaattaacataaaagcttatttatttgcctaaacaattttt 52895344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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