View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4673-Insertion-4 (Length: 720)

Name: NF4673-Insertion-4
Description: NF4673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4673-Insertion-4
NF4673-Insertion-4
[»] chr3 (39 HSPs)
chr3 (516-628)||(54301342-54301454)
chr3 (333-461)||(54301508-54301641)
chr3 (174-329)||(54540730-54540887)
chr3 (174-329)||(54539759-54539916)
chr3 (174-329)||(8456482-8456639)
chr3 (174-329)||(7267648-7267804)
chr3 (188-329)||(49398131-49398273)
chr3 (174-329)||(22776752-22776909)
chr3 (196-311)||(4271464-4271579)
chr3 (174-329)||(19984853-19985010)
chr3 (174-329)||(49216251-49216408)
chr3 (208-329)||(12700179-12700300)
chr3 (208-316)||(55191969-55192077)
chr3 (231-329)||(29931230-29931330)
chr3 (231-329)||(29980384-29980484)
chr3 (208-329)||(534503-534626)
chr3 (208-329)||(7758406-7758529)
chr3 (218-311)||(6249633-6249725)
chr3 (174-275)||(10457600-10457701)
chr3 (231-329)||(29932696-29932795)
chr3 (231-329)||(29981850-29981949)
chr3 (208-329)||(34019119-34019240)
chr3 (174-329)||(7268767-7268923)
chr3 (226-329)||(12703492-12703596)
chr3 (232-329)||(46721218-46721317)
chr3 (208-329)||(47610554-47610677)
chr3 (174-245)||(22775836-22775907)
chr3 (241-329)||(24516464-24516554)
chr3 (174-308)||(31645000-31645134)
chr3 (226-329)||(47614189-47614294)
chr3 (251-329)||(51038807-51038887)
chr3 (208-316)||(47609716-47609824)
chr3 (218-329)||(51470439-51470551)
chr3 (197-329)||(54986970-54987102)
chr3 (257-329)||(53614823-53614897)
chr3 (218-311)||(6170296-6170387)
chr3 (232-329)||(51037540-51037638)
chr3 (257-325)||(52104489-52104555)
chr3 (257-329)||(53901411-53901483)
[»] chr4 (38 HSPs)
chr4 (174-328)||(31599794-31599950)
chr4 (174-329)||(31600925-31601082)
chr4 (174-329)||(35934348-35934503)
chr4 (188-329)||(52491561-52491704)
chr4 (8-70)||(31600060-31600122)
chr4 (175-329)||(35935474-35935630)
chr4 (188-329)||(8757679-8757820)
chr4 (174-316)||(21178015-21178157)
chr4 (174-329)||(26421562-26421718)
chr4 (208-329)||(1835076-1835199)
chr4 (218-329)||(19750559-19750671)
chr4 (218-329)||(19789135-19789247)
chr4 (227-329)||(8155742-8155845)
chr4 (174-276)||(10448200-10448302)
chr4 (208-329)||(1290172-1290295)
chr4 (188-325)||(8758791-8758930)
chr4 (208-329)||(13509333-13509455)
chr4 (218-329)||(25684938-25685051)
chr4 (218-329)||(48780252-48780365)
chr4 (208-329)||(1834123-1834247)
chr4 (208-329)||(1289101-1289224)
chr4 (208-320)||(37728539-37728651)
chr4 (174-276)||(10447066-10447168)
chr4 (218-329)||(10470550-10470663)
chr4 (257-329)||(17382997-17383070)
chr4 (208-316)||(5525378-5525486)
chr4 (208-329)||(10471362-10471485)
chr4 (208-329)||(25685796-25685919)
chr4 (234-325)||(27257960-27258052)
chr4 (258-329)||(49308051-49308123)
chr4 (233-329)||(1964440-1964538)
chr4 (231-313)||(33310086-33310168)
chr4 (226-329)||(12129627-12129732)
chr4 (257-329)||(17388234-17388307)
chr4 (205-314)||(33296244-33296353)
chr4 (208-329)||(5526100-5526222)
chr4 (208-329)||(13386506-13386630)
chr4 (253-329)||(55602380-55602457)
[»] chr5 (33 HSPs)
chr5 (174-329)||(28539760-28539916)
chr5 (174-328)||(36486428-36486584)
chr5 (174-329)||(28538680-28538837)
chr5 (192-329)||(36485304-36485443)
chr5 (192-275)||(1797255-1797338)
chr5 (174-329)||(40255612-40255769)
chr5 (188-329)||(33160241-33160383)
chr5 (208-329)||(19752916-19753038)
chr5 (218-329)||(25523073-25523186)
chr5 (8-70)||(28539612-28539673)
chr5 (218-329)||(5777905-5778016)
chr5 (259-325)||(2685754-2685820)
chr5 (218-312)||(2686385-2686479)
chr5 (218-316)||(19754114-19754212)
chr5 (208-329)||(42195138-42195259)
chr5 (208-329)||(16650829-16650952)
chr5 (218-329)||(21835045-21835157)
chr5 (174-276)||(24332972-24333074)
chr5 (208-316)||(42196174-42196282)
chr5 (245-320)||(33158113-33158188)
chr5 (258-320)||(1016887-1016949)
chr5 (258-320)||(18154509-18154570)
chr5 (218-329)||(25055416-25055529)
chr5 (174-247)||(5961494-5961567)
chr5 (257-329)||(25524150-25524225)
chr5 (208-320)||(2186785-2186897)
chr5 (208-329)||(5778810-5778933)
chr5 (177-329)||(5962515-5962667)
chr5 (208-329)||(22940597-22940719)
chr5 (34-70)||(36486277-36486313)
chr5 (252-338)||(20214191-20214278)
chr5 (174-325)||(1015492-1015645)
chr5 (238-329)||(25056385-25056478)
[»] scaffold0632 (2 HSPs)
scaffold0632 (189-329)||(3263-3404)
scaffold0632 (8-70)||(3089-3152)
[»] chr6 (22 HSPs)
chr6 (188-329)||(16704451-16704594)
chr6 (188-320)||(1829557-1829689)
chr6 (174-316)||(10785853-10785995)
chr6 (183-329)||(26575003-26575149)
chr6 (188-312)||(26574642-26574765)
chr6 (208-329)||(5658760-5658883)
chr6 (217-329)||(10784596-10784711)
chr6 (217-338)||(16703565-16703685)
chr6 (218-317)||(17496815-17496915)
chr6 (208-329)||(3721616-3721739)
chr6 (208-329)||(7316268-7316391)
chr6 (174-328)||(29473082-29473238)
chr6 (208-329)||(6842257-6842380)
chr6 (208-329)||(8659269-8659392)
chr6 (208-329)||(8660178-8660300)
chr6 (208-329)||(27437832-27437955)
chr6 (208-329)||(34834553-34834676)
chr6 (174-271)||(14822424-14822521)
chr6 (218-329)||(8821877-8821990)
chr6 (218-329)||(8822777-8822890)
chr6 (174-276)||(14823515-14823617)
chr6 (208-342)||(7314871-7315006)
[»] chr8 (35 HSPs)
chr8 (175-324)||(18978029-18978179)
chr8 (186-329)||(18979072-18979217)
chr8 (195-329)||(29968298-29968433)
chr8 (186-324)||(18970920-18971059)
chr8 (188-329)||(24122887-24123029)
chr8 (218-329)||(32207309-32207420)
chr8 (188-330)||(45112874-45113016)
chr8 (208-329)||(22221338-22221461)
chr8 (208-329)||(22227680-22227803)
chr8 (208-329)||(40471121-40471243)
chr8 (208-328)||(1824052-1824174)
chr8 (208-328)||(1858497-1858619)
chr8 (208-320)||(1823566-1823680)
chr8 (208-320)||(1858011-1858125)
chr8 (174-316)||(12351940-12352082)
chr8 (218-329)||(5513986-5514098)
chr8 (208-329)||(10007737-10007860)
chr8 (175-329)||(30568891-30569046)
chr8 (218-329)||(2378868-2378977)
chr8 (208-329)||(10006348-10006471)
chr8 (174-329)||(12353301-12353456)
chr8 (188-328)||(45114471-45114612)
chr8 (174-276)||(17844334-17844435)
chr8 (218-329)||(22220392-22220505)
chr8 (208-329)||(8388468-8388589)
chr8 (192-329)||(11287780-11287919)
chr8 (208-316)||(30336475-30336583)
chr8 (259-311)||(40469364-40469416)
chr8 (208-275)||(34625174-34625241)
chr8 (218-329)||(11282012-11282125)
chr8 (183-277)||(18488211-18488305)
chr8 (218-329)||(30335643-30335756)
chr8 (226-329)||(43661269-43661374)
chr8 (227-284)||(24359858-24359915)
chr8 (218-328)||(43661807-43661919)
[»] chr2 (28 HSPs)
chr2 (188-329)||(36450875-36451017)
chr2 (174-314)||(22587522-22587661)
chr2 (218-329)||(22848195-22848308)
chr2 (174-329)||(36449782-36449939)
chr2 (174-329)||(7899822-7899979)
chr2 (231-329)||(8535653-8535751)
chr2 (190-329)||(38840449-38840590)
chr2 (208-325)||(18300699-18300815)
chr2 (258-327)||(24476868-24476937)
chr2 (204-329)||(18904371-18904498)
chr2 (218-329)||(23869519-23869631)
chr2 (209-276)||(22587929-22587996)
chr2 (208-329)||(13030296-13030416)
chr2 (208-312)||(11258785-11258889)
chr2 (208-329)||(13570531-13570654)
chr2 (231-329)||(8534587-8534685)
chr2 (208-329)||(18797250-18797374)
chr2 (208-329)||(18299377-18299500)
chr2 (195-329)||(41878096-41878234)
chr2 (216-275)||(1410060-1410119)
chr2 (174-329)||(7898695-7898852)
chr2 (191-277)||(32739709-32739795)
chr2 (188-281)||(38839296-38839389)
chr2 (208-329)||(11938763-11938885)
chr2 (252-329)||(18868928-18869007)
chr2 (174-312)||(11257645-11257783)
chr2 (253-329)||(13567976-13568054)
chr2 (259-329)||(18906012-18906084)
[»] chr1 (36 HSPs)
chr1 (188-329)||(39699721-39699863)
chr1 (208-329)||(52274972-52275095)
chr1 (174-281)||(44411906-44412013)
chr1 (174-329)||(14999289-14999442)
chr1 (218-329)||(36613888-36614001)
chr1 (188-313)||(33088089-33088214)
chr1 (174-329)||(45149910-45150067)
chr1 (208-329)||(24422804-24422927)
chr1 (208-320)||(43058800-43058912)
chr1 (208-329)||(51684370-51684493)
chr1 (183-314)||(14999904-15000035)
chr1 (205-329)||(51685736-51685862)
chr1 (191-329)||(39698567-39698706)
chr1 (208-329)||(24426049-24426172)
chr1 (210-340)||(31194048-31194178)
chr1 (174-329)||(45148585-45148741)
chr1 (188-329)||(45157163-45157305)
chr1 (208-329)||(11437173-11437296)
chr1 (208-276)||(40384784-40384852)
chr1 (218-329)||(43378697-43378809)
chr1 (174-320)||(39151945-39152092)
chr1 (226-329)||(33088609-33088714)
chr1 (174-276)||(39153056-39153158)
chr1 (208-329)||(50680336-50680458)
chr1 (218-329)||(52276147-52276260)
chr1 (232-329)||(23980464-23980563)
chr1 (208-329)||(35594221-35594342)
chr1 (226-329)||(41364833-41364937)
chr1 (208-329)||(52827351-52827474)
chr1 (174-281)||(44404496-44404603)
chr1 (218-342)||(2940257-2940382)
chr1 (258-329)||(7674532-7674603)
chr1 (208-329)||(11436046-11436169)
chr1 (208-312)||(43059980-43060084)
chr1 (241-329)||(30249497-30249587)
chr1 (221-329)||(50681595-50681701)
[»] chr7 (25 HSPs)
chr7 (208-329)||(7500459-7500581)
chr7 (208-329)||(31659626-31659750)
chr7 (183-328)||(14999104-14999249)
chr7 (174-329)||(42886226-42886383)
chr7 (195-307)||(48933695-48933805)
chr7 (208-329)||(21505420-21505541)
chr7 (208-329)||(18371428-18371551)
chr7 (174-329)||(7501791-7501949)
chr7 (208-316)||(18372431-18372539)
chr7 (208-329)||(22630426-22630549)
chr7 (208-303)||(22629518-22629613)
chr7 (253-329)||(48934922-48935000)
chr7 (174-276)||(34352726-34352828)
chr7 (174-267)||(14998048-14998140)
chr7 (208-329)||(17781665-17781788)
chr7 (208-329)||(127341-127462)
chr7 (218-329)||(3227578-3227691)
chr7 (218-316)||(31949786-31949884)
chr7 (227-320)||(47369796-47369889)
chr7 (218-329)||(3227112-3227224)
chr7 (257-329)||(43899452-43899524)
chr7 (278-329)||(46483552-46483604)
chr7 (232-329)||(30439356-30439454)
chr7 (218-312)||(31660993-31661087)
chr7 (218-329)||(31949326-31949439)
[»] scaffold2034 (2 HSPs)
scaffold2034 (174-329)||(237-394)
scaffold2034 (174-311)||(918-1055)
[»] scaffold0302 (2 HSPs)
scaffold0302 (178-329)||(17474-17627)
scaffold0302 (188-329)||(18730-18873)
[»] scaffold0059 (2 HSPs)
scaffold0059 (174-329)||(4670-4826)
scaffold0059 (174-320)||(3690-3836)
[»] scaffold0186 (1 HSPs)
scaffold0186 (187-329)||(23085-23227)
[»] scaffold0294 (1 HSPs)
scaffold0294 (218-329)||(5422-5535)
[»] scaffold0093 (2 HSPs)
scaffold0093 (208-329)||(2439-2561)
scaffold0093 (208-329)||(7062-7184)
[»] scaffold0049 (2 HSPs)
scaffold0049 (218-329)||(7399-7512)
scaffold0049 (208-248)||(7893-7933)
[»] scaffold0019 (1 HSPs)
scaffold0019 (208-329)||(60094-60217)
[»] scaffold0003 (1 HSPs)
scaffold0003 (208-329)||(49407-49530)
[»] scaffold0369 (1 HSPs)
scaffold0369 (243-329)||(13197-13283)
[»] scaffold0112 (1 HSPs)
scaffold0112 (240-329)||(37152-37242)
[»] scaffold0320 (1 HSPs)
scaffold0320 (208-329)||(19492-19615)
[»] scaffold0586 (1 HSPs)
scaffold0586 (218-276)||(6402-6460)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 8e-57; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 516 - 628
Target Start/End: Complemental strand, 54301454 - 54301342
Alignment:
Q  516 gttccgttcgttccctttatcgccgttacttgctcctgttcgtatccaatactagtatcttttttggttgattacatatttacatataataacagtaacg 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54301454 gttccgttcgttccctttatcgccgttacttgctcctgttcgtatccaatactagtatcttttttggttgattacatatttacatataataacagtaacg 54301355  T
Q  616 tacacacgcatcc 628  Q
    |||||||||||||    
T  54301354 tacacacgcatcc 54301342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 333 - 461
Target Start/End: Complemental strand, 54301641 - 54301508
Alignment:
Q  333 aaaataaataaaaagagaagggctggagagggccgtgggtgggcccacagtgaccagagtggcaggctgtccggttgggttaagaaatgagaactct--- 429  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  54301641 aaaataaataaaaagagaagggctggagagggccgtgggtgggcccacagtgaccagagtggcaggctgtccggttgggttaagaaatgagaactctcaa 54301542  T
Q  430 --caaacacaacaaccctgtctgggcctggcctg 461  Q
      |||||||||||||||||||| |||||||||||    
T  54301541 atcaaacacaacaaccctgtcttggcctggcctg 54301508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 54540730 - 54540887
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||| || ||||||| ||||||||||||||||||||||| |||||||||| | ||| |||||||||||||||||    
T  54540730 cacacgtggcatgccacgtaggcattgaccggtcaaaattgacaaaaaggatcaaagttgcaaaggggctaaatcttagggggccaaaattgtagttttt 54540829  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    ||| |||  || ||||||||  |||||||| |||||||  ||||||||||||||||||    
T  54540830 gtacttaaggggtcaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttt 54540887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 54539916 - 54539759
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||| || ||||||||| ||||||||||||||||||||||||||||||   ||||||||| | |||| ||||||||||||||||    
T  54539916 cacacgtggcatgccacgtatgctttgaccagtcaaaattggcaaaaaggatcaaagttgcaaatgagctaaatcttaggggatcaaaattgtagttttt 54539817  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    |||||||| || | ||||||  |||||||| |||||||  || |||||||||||||||    
T  54539816 gtatttagggggttaaaattgcaagtttttgaaagttaagggtggaaaagtgcacttt 54539759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 8456639 - 8456482
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagtt-aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttt 272  Q
    |||||||| |||| |||| |||| ||||| || | ||||||| | |||||||||||| |||||| |||||||||||| | ||| ||||||||||||||||    
T  8456639 cacacgtggcatgccacgcaggcgttgactaggtcaaaattgactaaaaggatcaaatttgcaatgaggctaaatcttagggggccaaaattgtagtttt 8456540  T
Q  273 tgtatttagaggatcaaaattataagtttttaaaagttaggggg-aaaagtgcacttt 329  Q
    ||||||||| ||| |||||||  |||||||| ||| |||||||| |||||||||||||    
T  8456539 tgtatttaggggaccaaaattgcaagtttttgaaaattagggggaaaaagtgcacttt 8456482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 7267804 - 7267648
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || || ||| ||||||||| || ||||||| | |||||||| |||||||||| |||||||||||| | ||| ||||||||||||||| |    
T  7267804 cacacgtggcgtgccatgtatgcattgaccggtcaaaattgaccaaaaggattaaagttgcaatgaggctaaatcttagggggccaaaattgtagtttct 7267705  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtt-agggggaaaagtgcacttt 329  Q
    ||| |||| ||  |||||||  |||||||| |||||| |||||||||||||||||||    
T  7267704 gtacttagggggccaaaattgcaagtttttgaaagttaagggggaaaagtgcacttt 7267648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 188 - 329
Target Start/End: Complemental strand, 49398273 - 49398131
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || || ||||| |||||||||||||||||||||   ||||||||| ||| | ||||||||||| |||||||   ||||  | |    
T  49398273 cacgtaggcattgaccggtcaacattggtaaaaaggatcaaagttgcaaatgagctaaatcttaagaggccaaaattgtaatttttgttcatagaacacc 49398174  T
Q  288 aaaattataagtttttaaaagtt-agggggaaaagtgcacttt 329  Q
    ||||| |||| ||||||||| || |||||||||||||||||||    
T  49398173 aaaataataattttttaaaacttaagggggaaaagtgcacttt 49398131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 22776752 - 22776909
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||| || |||||||| |||| ||| ||||  ||||||| |||||| ||| | ||| |||||||||||||||||    
T  22776752 cacacgtggcatgccacgtaggcattgaccggtcaaaattgggaaaatggaccaaatatgcaaaggggctaattcttagggggccaaaattgtagttttt 22776851  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttaggg--ggaaaagtgcacttt 329  Q
    |||  ||| ||  |||||||  || ||| | ||||||||||  |||||||||||||||    
T  22776852 gtacatagggggccaaaattgcaactttctgaaagttaggggtggaaaagtgcacttt 22776909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 196 - 311
Target Start/End: Complemental strand, 4271579 - 4271464
Alignment:
Q  196 cattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattat 295  Q
    |||||||| || ||||||| ||||||||||||||||||||||  |||||||||| |||   | ||||||||||||||| ||||||   |||||||||||     
T  4271579 cattgaccggtcaaaattgacaaaaaggatcaaagttgcaaatgggctaaatcttaagatgctaaaattgtagtttttatatttaagagatcaaaattac 4271480  T
Q  296 aagtttttaaaagtta 311  Q
    || ||||| |||||||    
T  4271479 aaatttttgaaagtta 4271464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 19985010 - 19984853
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||| ||| |||| |||||||||||||||  || ||||||| | ||||||| ||||| ||||||| || ||||||| || ||  ||||||||||||||||    
T  19985010 cacatgtggcatgccacgtaggcattgactggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagggtcaaaattgtagttttt 19984911  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    |||  ||| ||  |||||||  |||||||| ||| |||  ||||||||||||||||||    
T  19984910 gtacatagggggccaaaattgcaagtttttgaaacttagggggggaaaagtgcacttt 19984853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 49216408 - 49216251
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||||||||||| ||||||| |||||| | || ||||||||| |||| |||||||| ||||||   ||||||||| |||||  || |||||||||||||    
T  49216408 cacacgtgacatgccacgtagacattgatcggtcaaaattggccaaaatgatcaaagatgcaaatgagctaaatcttaaggggacataattgtagttttt 49216309  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttag--ggggaaaagtgcacttt 329  Q
    |||  ||| || ||||||||  || ||||| ||| ||||  | |||||||||||||||    
T  49216308 gtacatagggggtcaaaattgcaactttttgaaacttaggcgtggaaaagtgcacttt 49216251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 12700300 - 12700179
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||| | |||||||||  | |||  ||||||||||||||||||| |||| ||  |||||||  |||||||| |||    
T  12700300 aaaattgaccaaaaggaccaaagatgcaatgtggctaaatcatagggggtcaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaa 12700201  T
Q  308 gttagggggaaaagtgcacttt 329  Q
    ||||||||| ||||||||||||    
T  12700200 gttaggggggaaagtgcacttt 12700179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 55191969 - 55192077
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| |||||| ||||||| |||||||| || ||| |||  |||| |||||||||||||||||||| |||||||  |||||||  |||||||| |||    
T  55191969 aaaattgacaaaaatgatcaaaattgcaaaggggttaattcttgaggggccaaaattgtagtttttgtacttagagggccaaaattgcaagtttttgaaa 55192068  T
Q  308 gttaggggg 316  Q
    |||| ||||    
T  55192069 gttaagggg 55192077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 231 - 329
Target Start/End: Complemental strand, 29931330 - 29931230
Alignment:
Q  231 ttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggg--ggaaaagtgcactt 328  Q
    |||||||| || ||||||| | ||| ||||||||||||||||||||||||| ||   ||||||  |||||||| ||||||||||  ||||||||||||||    
T  29931330 ttgcaaaggggttaaatcttagggggccaaaattgtagtttttgtatttagggggcaaaaattgcaagtttttgaaagttaggggtggaaaagtgcactt 29931231  T
Q  329 t 329  Q
    |    
T  29931230 t 29931230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 231 - 329
Target Start/End: Complemental strand, 29980484 - 29980384
Alignment:
Q  231 ttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggg--ggaaaagtgcactt 328  Q
    |||||||| || ||||||| | ||| ||||||||||||||||||||||||| ||   ||||||  |||||||| ||||||||||  ||||||||||||||    
T  29980484 ttgcaaaggggttaaatcttagggggccaaaattgtagtttttgtatttagggggcaaaaattgcaagtttttgaaagttaggggtggaaaagtgcactt 29980385  T
Q  329 t 329  Q
    |    
T  29980384 t 29980384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 534626 - 534503
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||| ||| ||||| |||||| ||||||||||| | ||| ||||||||||||||||||||  |||  | ||||||||  |||||||| | |    
T  534626 aaaattggccaaatggaccaaagatgcaaataggctaaatcttagggggccaaaattgtagtttttgtacataggaggtcaaaattgcaagtttttgaga 534527  T
Q  308 gtt--agggggaaaagtgcacttt 329  Q
    |||  ||||| |||||||||||||    
T  534526 gttagaggggaaaaagtgcacttt 534503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 7758529 - 7758406
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| | ||||| || ||||||| | ||| | |||||||||||||||||| |||| || ||||||||  |||||||| |||    
T  7758529 aaaattgaccaaaaggaccaaagatacaaaggggttaaatcttagggggcaaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaa 7758430  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
    ||||  |||| |||||||||||||    
T  7758429 gttaagggggaaaaagtgcacttt 7758406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 218 - 311
Target Start/End: Complemental strand, 6249725 - 6249633
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta 311  Q
    |||||||||||| |||||| ||| |||||||| ||||||  |||||||||||||||||| |||  |||| ||||||  |||||||| |||||||    
T  6249725 aaaaggatcaaatttgcaatgagactaaatcttaagggat-aaaattgtagtttttgtacttaagggattaaaattgcaagtttttgaaagtta 6249633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 174 - 275
Target Start/End: Complemental strand, 10457701 - 10457600
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||||||  ||| ||||||||||||||||||| |||||||| |||||||| ||||  | |||| || |||| ||  | ||| |||||||||||||||||    
T  10457701 cacacgtggaatgccacgtaggcattgaccagtcaaaattgggaaaaaggaccaaatatacaaatagactaattcctagggggccaaaattgtagttttt 10457602  T
Q  274 gt 275  Q
    ||    
T  10457601 gt 10457600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 29932696 - 29932795
Alignment:
Q  231 ttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt--agggggaaaagtgcactt 328  Q
    |||||||| | |||||||| |||||  ||||||||||||||||||| |||| ||  |||||||  |||||||| ||||||  ||||||||||||||||||    
T  29932696 ttgcaaagggactaaatcttaaggggtcaaaattgtagtttttgtacttag-gggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactt 29932794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 29981850 - 29981949
Alignment:
Q  231 ttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt--agggggaaaagtgcactt 328  Q
    |||||||| | |||||||| |||||  ||||||||||||||||||| |||| ||  |||||||  |||||||| ||||||  ||||||||||||||||||    
T  29981850 ttgcaaagggactaaatcttaaggggtcaaaattgtagtttttgtacttag-gggccaaaattgcaagtttttgaaagttagagggggaaaagtgcactt 29981948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 34019119 - 34019240
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||   ||||||| | | ||||||||||||||||| ||||||  ||| || ||||||||  |||||||| |||    
T  34019119 aaaattgaccaaaaggaccaaagatgcaaatgagctaaattttaggggaccaaaattgtagtgtttgtacctagggggtcaaaattgcaagtttttgaaa 34019218  T
Q  308 gttagggggaaaagtgcacttt 329  Q
    |||| |||||||| || |||||    
T  34019219 gttaaggggaaaaatgtacttt 34019240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 7268767 - 7268923
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || |||||| ||||||||| || |||||||   |||||||| ||| |||||| | | |||||||| | | | ||||||||||||||| |    
T  7268767 cacacgtggcgtgccacgtaagcattgaccggtcaaaattgatcaaaaggattaaaattgcaatgggactaaatcttaggaggccaaaattgtagtttct 7268866  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta-gggggaaaagtgcacttt 329  Q
     || ||||  |  |||||||  |||||||| ||||||| ||||||||||||||||||    
T  7268867 atacttaggaggccaaaattgcaagtttttgaaagttaggggggaaaagtgcacttt 7268923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 12703492 - 12703596
Alignment:
Q  226 caaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag-ggggaaaagtgc 324  Q
    ||||| ||||| | |||||||||  | ||| |||||||||||||||||||| |||| ||  |||||||| || ||||| |||||||| ||| ||||||||    
T  12703492 caaagatgcaatggggctaaatcatagggggccaaaattgtagtttttgtacttagggggccaaaattacaaatttttgaaagttagagggaaaaagtgc 12703591  T
Q  325 acttt 329  Q
    |||||    
T  12703592 acttt 12703596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 329
Target Start/End: Original strand, 46721218 - 46721317
Alignment:
Q  232 tgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg--gaaaagtgcacttt 329  Q
    ||||||| |||||||||| | ||||| ||||||||||||||||||  ||| || | |||||   || |||||||||||||||||  ||||||||||||||    
T  46721218 tgcaaaggggctaaatcttaggggactaaaattgtagtttttgtacatagggggttaaaatcgcaactttttaaaagttagggggagaaaagtgcacttt 46721317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 47610554 - 47610677
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| ||  |||||||  |||||||| |||    
T  47610554 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaa 47610653  T
Q  308 gtt--agggggaaaagtgcacttt 329  Q
    |||  |||||||||||||||||||    
T  47610654 gttagagggggaaaagtgcacttt 47610677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 22775907 - 22775836
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaa 245  Q
    ||||||| ||||| |||||||||||||||| || |||||||| |||||||| ||||  ||||||| ||||||    
T  22775907 cacacgtaacatgccacgtaggcattgaccggtcaaaattgggaaaaaggaccaaatctgcaaaggggctaa 22775836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 241 - 329
Target Start/End: Complemental strand, 24516554 - 24516464
Alignment:
Q  241 gctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggg--aaaagtgcacttt 329  Q
    ||||||||| ||||| ||||||||||||||||| || |||| |   |||||||  |||||||| ||||||||||||  |||||||||||||    
T  24516554 gctaaatcttaaggggccaaaattgtagtttttatacttagggtgccaaaattgcaagttttttaaagttaggggggaaaaagtgcacttt 24516464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 308
Target Start/End: Complemental strand, 31645134 - 31645000
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||||||||||| ||| ||| | |||||| || ||||||||  ||||||| ||||| ||||||  |||||||||| | | |   |||||||||||||||    
T  31645134 cacacgtgacatgacacatagacgttgaccggtcaaaattggtcaaaaggaccaaagatgcaaatgggctaaatcttaggaggttaaaattgtagttttt 31645035  T
Q  274 gtatttagaggatcaaaattataagtttttaaaag 308  Q
    | | |||| ||  ||||||| ||||||||| ||||    
T  31645034 gcacttagggggccaaaattgtaagtttttgaaag 31645000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 226 - 329
Target Start/End: Complemental strand, 47614294 - 47614189
Alignment:
Q  226 caaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt--agggggaaaagtg 323  Q
    ||||| |||||||||||||||||| | ||| |||||||||| |||||  || |||| ||  |||||||  |||||||| ||||||  ||||| |||||||    
T  47614294 caaagatgcaaagaggctaaatcttagggggccaaaattgttgttttgatacttagggggccaaaattgcaagtttttgaaagttagaggggaaaaagtg 47614195  T
Q  324 cacttt 329  Q
    ||||||    
T  47614194 cacttt 47614189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 251 - 329
Target Start/End: Original strand, 51038807 - 51038887
Alignment:
Q  251 aagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    |||||||||||||||||||||||||   ||| || ||||||||  || |||||||||||||  || |||||||||||||||    
T  51038807 aagggaccaaaattgtagtttttgttcatagggggtcaaaattgcaactttttaaaagttaagggtggaaaagtgcacttt 51038887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 47609824 - 47609716
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||    ||||||| ||||| ||| |||| || ||||||||  |||||||| |||    
T  47609824 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggttaaattgtggttttggtacttagggggtcaaaattgcaagtttttgaaa 47609725  T
Q  308 gttaggggg 316  Q
    |||||||||    
T  47609724 gttaggggg 47609716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 51470439 - 51470551
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta-ggggg 316  Q
    ||||||| ||||||||||| |  ||||||||| | |||  | ||||||| ||||| ||| |||| ||||| |||||  |||||||| ||||||| |||||    
T  51470439 aaaaggaccaaagttgcaatggagctaaatcttaggggtgctaaattgtggttttggtacttaggggatctaaattgcaagtttttgaaagttagggggg 51470538  T
Q  317 aaaagtgcacttt 329  Q
    || ||||||||||    
T  51470539 aagagtgcacttt 51470551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 197 - 329
Target Start/End: Original strand, 54986970 - 54987102
Alignment:
Q  197 attgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattata 296  Q
    ||||||| || ||||||||| |||| |||||||| |||||||  ||||||||| |  ||  ||||||| |||||||| ||  ||| |||  |||||   |    
T  54986970 attgaccggtcaaaattggccaaaatgatcaaagatgcaaaggagctaaatcttagagggtcaaaattatagtttttatacataggggactaaaatcgca 54987069  T
Q  297 agtttttaaaagttagggggaaaagtgcacttt 329  Q
    | ||||| ||| |||||||||||||||||||||    
T  54987070 actttttgaaacttagggggaaaagtgcacttt 54987102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 53614897 - 53614823
Alignment:
Q  257 ccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    ||||||||||||||||| ||| |||||||  |||||| ||||||||| |||||||  || |||||| ||||||||    
T  53614897 ccaaaattgtagtttttatatatagaggactaaaattgtaagtttttgaaagttaagggaggaaaaatgcacttt 53614823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 311
Target Start/End: Complemental strand, 6170387 - 6170296
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta 311  Q
    |||| ||||||| |||||| ||| |||||||| |||||   ||||||||| |||||||| |||  |||||||||||  |||||||| |||||||    
T  6170387 aaaatgatcaaatttgcaatgagactaaatcttaagggt--aaaattgtaatttttgtacttaagggatcaaaattgcaagtttttgaaagtta 6170296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 232 - 329
Target Start/End: Complemental strand, 51037638 - 51037540
Alignment:
Q  232 tgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt-agggggaaaagtgcacttt 329  Q
    ||||||| |||||| ||| | ||| | |||||||||||||||||   |||||| ||||||||  || ||||| |||||| |||| ||||||||||||||    
T  51037638 tgcaaaggggctaattcttagggggctaaaattgtagtttttgttcatagagggtcaaaattgcaactttttgaaagttaagggagaaaagtgcacttt 51037540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 52104555 - 52104489
Alignment:
Q  257 ccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggggaaaagtgca 325  Q
    |||||||| |||||||||||  |||  || |||||||| || ||||| |||||||||||||||||||||    
T  52104555 ccaaaattatagtttttgtacatag--gaccaaaattacaactttttgaaagttagggggaaaagtgca 52104489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 257 - 329
Target Start/End: Original strand, 53901411 - 53901483
Alignment:
Q  257 ccaaaattgtagtttttgtatttagagga-tcaaaattataagtttttaaaagttagggggaaaagtgcacttt 329  Q
    |||| ||||||||||||||| ||| |||| ||||||||  || ||||| ||| |||||||||||||||||||||    
T  53901411 ccaacattgtagtttttgtactta-aggagtcaaaattgcaacttttttaaacttagggggaaaagtgcacttt 53901483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 7e-48; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 31599950 - 31599794
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||    
T  31599950 cacacgtggcatgccacgtaggcattgaccggtcaaaattggcaaaaaggatcaaagttgcaaaggggctaaatcttaggggaccaaaattgtagttttt 31599851  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttaggggg--aaaagtgcactt 328  Q
    ||| |||| || ||||||||  |||||||||||||||||||||  ||||||||||||    
T  31599850 gtacttagggggtcaaaattgcaagtttttaaaagttaggggggaaaaagtgcactt 31599794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 31600925 - 31601082
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| ||| |||||||||||| || ||||||| ||||||||||||||||||||||  |||||||||| |||||  ||||||||||||||||    
T  31600925 cacacgtggcatgccacataggcattgaccggtcaaaattgacaaaaaggatcaaagttgcaaatgggctaaatcttaaggggtcaaaattgtagttttt 31601024  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtt--agggggaaaagtgcacttt 329  Q
    ||| |||| || ||||||||  |||||||||||||||  ||||| |||||||||||||    
T  31601025 gtacttagggggtcaaaattgcaagtttttaaaagttagaggggaaaaagtgcacttt 31601082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 35934503 - 35934348
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||||||||||| |||||||||||||||  || ||||||| | ||||| || |||||||||| | |||||||||| ||||| |||||||| || ||| |    
T  35934503 cacacgtgacatgccacgtaggcattgactggtcaaaattgaccaaaagaattaaagttgcaatggggctaaatcttaaggggccaaaattataatttct 35934404  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttagggggaaaagtgcacttt 329  Q
     || |||| ||| |||||||| |||||||| |||||||||||||||||||||||||    
T  35934403 ttacttaggggaccaaaattacaagtttttgaaagttagggggaaaagtgcacttt 35934348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 188 - 329
Target Start/End: Original strand, 52491561 - 52491704
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||| | |||||||| |||||||||| | |||||||| | | ||| ||||||||||||||| ||||||||||||| |    
T  52491561 cacgtaggcattgacctgtcaaaattgaccaaaaggattaaagttgcaatggggctaaattttagggggccaaaattgtagtttctgtatttagaggacc 52491660  T
Q  288 aaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    ||||||  |||||||| |||||||  || |||||||| ||||||    
T  52491661 aaaattgcaagtttttgaaagttaagggtggaaaagtacacttt 52491704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 31600122 - 31600060
Alignment:
Q  8 ggatggtggtactggtgatgatgaatatgggggaagatgatatgtgcctttccttcttcatct 70  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31600122 ggatggtggtactggtgatgatgaatctgggggaagatgatatgtgcctttccttcttcatct 31600060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 175 - 329
Target Start/End: Original strand, 35935474 - 35935630
Alignment:
Q  175 acacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttg 274  Q
    ||||||| | || ||| |||||||||||| || ||||||||| |||||||| |||||||||| |||||||||||| | ||| ||||||||||||||| ||    
T  35935474 acacgtggcgtgccacataggcattgaccggtcaaaattggccaaaaggattaaagttgcaatgaggctaaatcttagggggccaaaattgtagtttatg 35935573  T
Q  275 tatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    || |||| ||   ||||||  || |||||||||||||  ||||| ||||||||||||    
T  35935574 tacttagggggctaaaattgcaaatttttaaaagttaagggggggaaagtgcacttt 35935630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 188 - 329
Target Start/End: Complemental strand, 8757820 - 8757679
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||| | |||||||| ||| |||||| | |||||||||| ||||| ||||||||||||||| |||| |||| ||       
T  8757820 cacgtaggcattgacc-gtcaaaattgaccaaaaggattaaaattgcaatggggctaaatcttaagggtccaaaattgtagtttctgtacttagggggct 8757722  T
Q  288 aaaattataagtttttaaaagtt-agggggaaaagtgcacttt 329  Q
    |||||| ||||||||| |||||| ||||| |||||||||||||    
T  8757721 aaaattgtaagtttttgaaagttaaggggaaaaagtgcacttt 8757679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 174 - 316
Target Start/End: Complemental strand, 21178157 - 21178015
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || ||| ||||||||||||||| |||||||||||||| |||||||||||||||  |||||||| | | |||  ||||||||||||||||    
T  21178157 cacacgtggcgtgccacataggcattgaccagtcaaaattggcaaaaatgatcaaagttgcaaaagggctaaattttagggggtcaaaattgtagttttt 21178058  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttaggggg 316  Q
    ||   ||| |||||||||||  || ||| | ||||||||||||    
T  21178057 gttcataggggatcaaaattgcaactttatgaaagttaggggg 21178015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 26421562 - 26421718
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagtt-aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttt 272  Q
    |||||||| |||| |||| |||| ||||| | || ||||||| | |||| ||||||| |||||| | |||||||||| |||||  |||||||||||||||    
T  26421562 cacacgtggcatgccacgcaggcgttgactattttaaaattgactaaaatgatcaaatttgcaatg-ggctaaatcttaaggggtcaaaattgtagtttt 26421660  T
Q  273 tgtatttagaggatcaaaattataagtttttaaaagttag-ggggaaaagtgcacttt 329  Q
    |||| ||||  | ||||||||  |||||||| |||||||| |||||||||||||||||    
T  26421661 tgtacttaggaggtcaaaattgcaagtttttgaaagttagaggggaaaagtgcacttt 26421718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 1835076 - 1835199
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||| ||||| ||||||| |||||||||| | |||  |||||||||||||||  || |||| || ||||||||  |||||||| |||    
T  1835076 aaaattggctaaaaggaccaaagatgcaaaggggctaaatcttagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaa 1835175  T
Q  308 gttaggg--ggaaaagtgcacttt 329  Q
    |||||||  |||||||||||||||    
T  1835176 gttagggatggaaaagtgcacttt 1835199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 19750559 - 19750671
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta-ggggg 316  Q
    |||||||||||| |||||| | |||||||||| | |||   |||||||||||||||||| |||| ||  |||||||  |||||||||||||||| |||||    
T  19750559 aaaaggatcaaatttgcaatggggctaaatcttaggggggtaaaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttagggggg 19750658  T
Q  317 aaaagtgcacttt 329  Q
    |||||||||||||    
T  19750659 aaaagtgcacttt 19750671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 19789247 - 19789135
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag-gggg 316  Q
    |||||||||||| |||||| | |||||||||| | |||   |||||||||||||||||| |||| ||  |||||||  ||||||||||||||||| ||||    
T  19789247 aaaaggatcaaatttgcaatggggctaaatcttaggggggtaaaattgtagtttttgtacttagggggccaaaattgcaagtttttaaaagttagggggg 19789148  T
Q  317 aaaagtgcacttt 329  Q
    |||||||||||||    
T  19789147 aaaagtgcacttt 19789135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 227 - 329
Target Start/End: Complemental strand, 8155845 - 8155742
Alignment:
Q  227 aaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc-aaaattataagtttttaaaagttagggggaaaagtgca 325  Q
    |||| ||||||| |||||||||| | ||| |||||||||||||||||| | |||| ||| | ||||||  |||||||| |||||||||||||||||||||    
T  8155845 aaagatgcaaagcggctaaatcttagggggccaaaattgtagtttttgaacttaggggagctaaaattgcaagtttttgaaagttagggggaaaagtgca 8155746  T
Q  326 cttt 329  Q
    ||||    
T  8155745 cttt 8155742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 10448200 - 10448302
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||  || ||||||||| ||||||| ||||| ||||||| ||||| |||| |  || |||||||||||||||||    
T  10448200 cacacgtggcatgccacgtaggcattgactggtcaaaattggccaaaaggaccaaagatgcaaaggggctatatcttagagggccaaaattgtagttttt 10448299  T
Q  274 gta 276  Q
    |||    
T  10448300 gta 10448302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 1290172 - 1290295
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||| || ||||||| | ||| | |||||||||||||||||| |||||||  |||||||  ||| |||| |||    
T  1290172 aaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagggggctaaaattgtagtttttgtacttagagggccaaaattgcaagattttgaaa 1290271  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
    ||||  ||||||||||||||||||    
T  1290272 gttaaggggggaaaagtgcacttt 1290295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 188 - 325
Target Start/End: Original strand, 8758791 - 8758930
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||| |  | ||||||| | |||||||| ||| |||||| |  ||||||||| ||||| ||||||||||||||| |||| |||| ||  |    
T  8758791 cacgtaggcattgatcgatcaaaattgaccaaaaggattaaaattgcaatggagctaaatcttaaggggccaaaattgtagtttctgtacttagggggcc 8758890  T
Q  288 aaaattataagtttttaaaagtta--gggggaaaagtgca 325  Q
    ||||||  |||||||| |||||||  ||||||||||||||    
T  8758891 aaaattgcaagtttttgaaagttaaggggggaaaagtgca 8758930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 13509333 - 13509455
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||| ||||| ||||||| |||||||||| | |||| |||||||||||||||  || || | ||  |||||||  || |||||||||    
T  13509333 aaaattggccaaaaggagcaaaggtgcaaaggggctaaatcttaggggatcaaaattgtagttttcatacttggggggccaaaattgcaattttttaaaa 13509432  T
Q  308 gtta-gggggaaaagtgcacttt 329  Q
    |||| ||||||||||| ||||||    
T  13509433 gttaggggggaaaagtacacttt 13509455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 25685051 - 25684938
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag--ggg 315  Q
    ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| ||||||| ||||||||  |||||||| ||||||||  |||    
T  25685051 aaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagagggtcaaaattgcaagtttttgaaagttagggggg 25684952  T
Q  316 gaaaagtgcacttt 329  Q
    ||||||||||||||    
T  25684951 gaaaagtgcacttt 25684938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 48780365 - 48780252
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag--ggg 315  Q
    ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| || ||||||||  |||||||||||||||||  |||    
T  48780365 aaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggtcaaaattgcaagtttttaaaagttagggggg 48780266  T
Q  316 gaaaagtgcacttt 329  Q
    ||||||||||||||    
T  48780265 gaaaagtgcacttt 48780252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 1834247 - 1834123
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaaggga-ccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaa 306  Q
    ||||||| | ||||||| ||||| ||||||  |||||||||| | |||  ||||||||||||||||| ||  ||| || |||||||| ||||||||| ||    
T  1834247 aaaattgaccaaaaggaccaaagatgcaaatgggctaaatcttaggggggccaaaattgtagtttttatacatagggggtcaaaattgtaagttttttaa 1834148  T
Q  307 agtt--agggggaaaagtgcacttt 329  Q
    ||||  |||||||||||||||||||    
T  1834147 agttagagggggaaaagtgcacttt 1834123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 1289224 - 1289101
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||| | || ||||||| ||| | | ||||||||||||||| || ||||||||||||||||| || | ||| |||    
T  1289224 aaaattgaccaaaaggaccaaagatgcaagggggttaaatcttaagaggctaaaattgtagtttttatacttagaggatcaaaattacaaatatttgaaa 1289125  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
    ||||  ||||||||||| ||||||    
T  1289124 gttaaggggggaaaagttcacttt 1289101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 320
Target Start/End: Original strand, 37728539 - 37728651
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||| |||||||| ||||||||| || ||  |||||||||||||||||||  |||  |  |||||||  || |||||||||    
T  37728539 aaaattgactaaaaggatcaaagatgcaaagaagctaaatcttaaagggtcaaaattgtagtttttgtacataggaggccaaaattgcaactttttaaaa 37728638  T
Q  308 gttagggggaaaa 320  Q
    |||||| ||||||    
T  37728639 gttaggaggaaaa 37728651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 10447168 - 10447066
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || |||||||||||||||  ||||||||| || ||||||| ||||| ||||||| |||||||||| | |||   |||||||| ||||||    
T  10447168 cacacgtggcgtgccacgtaggcattgactggttaaaattagccaaaaggaccaaagatgcaaaggggctaaatcttaggggggtaaaattgtggttttt 10447069  T
Q  274 gta 276  Q
    |||    
T  10447068 gta 10447066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 10470663 - 10470550
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--gggg 315  Q
    ||||||| ||||||||||| | |||||||||| | |||  | |||||||  |||| ||| ||||||| ||||||||  |||||||| |||||||  ||||    
T  10470663 aaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtgattttggtacttagagggtcaaaattgcaagtttttgaaagttaaggggg 10470564  T
Q  316 gaaaagtgcacttt 329  Q
    ||||||||||||||    
T  10470563 gaaaagtgcacttt 10470550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 17383070 - 17382997
Alignment:
Q  257 ccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg-gaaaagtgcacttt 329  Q
    |||||||||||||||||||| |||  ||| |||||||  |||||||| ||||||||||| ||||||||||||||    
T  17383070 ccaaaattgtagtttttgtacttaagggaccaaaattgcaagtttttgaaagttaggggagaaaagtgcacttt 17382997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 316
Target Start/End: Complemental strand, 5525486 - 5525378
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| || ||||||||  |||||||| |||    
T  5525486 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggtcaaaattgcaagtttttgaaa 5525387  T
Q  308 gttaggggg 316  Q
    |||||||||    
T  5525386 gttaggggg 5525378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 10471362 - 10471485
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| ||  |||||||  |||||||| |||    
T  10471362 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaa 10471461  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
    ||||  ||||||||||||||||||    
T  10471462 gttaaggggggaaaagtgcacttt 10471485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 25685796 - 25685919
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| ||  |||||||  |||||||| |||    
T  25685796 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttagggggtctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaa 25685895  T
Q  308 gtt--agggggaaaagtgcacttt 329  Q
    |||  |||||||||||||||||||    
T  25685896 gttagagggggaaaagtgcacttt 25685919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 234 - 325
Target Start/End: Original strand, 27257960 - 27258052
Alignment:
Q  234 caaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggga-aaagtgca 325  Q
    ||||| |||||||||| |||||   ||||||| ||||||||||| |||||| ||||||||  || ||||||||||||| ||||| ||||||||    
T  27257960 caaaggggctaaatcttaaggggttaaaattggagtttttgtatatagagggtcaaaattgcaactttttaaaagttaaggggagaaagtgca 27258052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 329
Target Start/End: Original strand, 49308051 - 49308123
Alignment:
Q  258 caaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta-gggggaaaagtgcacttt 329  Q
    ||||||||||||||||||| |||| ||  |||||||  |||||||| ||||||| ||||||||||||||||||    
T  49308051 caaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaagttaggggggaaaagtgcacttt 49308123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 1964440 - 1964538
Alignment:
Q  233 gcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    |||||| || ||| ||| |||||||||||||||||||||||||   ||| ||  ||||||| ||| |||||||||||||  || |||||||||||||||    
T  1964440 gcaaaggggataattcttaagggaccaaaattgtagtttttgttcatagggggccaaaattgtaactttttaaaagttaagggtggaaaagtgcacttt 1964538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 33310086 - 33310168
Alignment:
Q  231 ttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc-aaaattataagtttttaaaagttagg 313  Q
    ||||||||||||||||||  |  || |||||||| |||||||||||||||| ||| | ||||||| ||||||||||||||||||    
T  33310086 ttgcaaagaggctaaatcatagagggccaaaattatagtttttgtatttag-ggagctaaaattacaagtttttaaaagttagg 33310168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 226 - 329
Target Start/End: Complemental strand, 12129732 - 12129627
Alignment:
Q  226 caaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtg 323  Q
    ||||| ||||||  |||||||||| |||||  ||||||||||||||||||| |||  ||  |||||||  |||||||| |||||||   |||||||||||    
T  12129732 caaagatgcaaatgggctaaatcttaaggggtcaaaattgtagtttttgtacttacggggccaaaattgcaagtttttgaaagttaagaggggaaaagtg 12129633  T
Q  324 cacttt 329  Q
    ||||||    
T  12129632 cacttt 12129627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 257 - 329
Target Start/End: Original strand, 17388234 - 17388307
Alignment:
Q  257 ccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta-gggggaaaagtgcacttt 329  Q
    ||||||||||||||| |||| |||  ||| |||||||  |||||||| ||||||| ||||||||||||||||||    
T  17388234 ccaaaattgtagtttatgtacttaagggaccaaaattgcaagtttttgaaagttaggggggaaaagtgcacttt 17388307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 33296353 - 33296244
Alignment:
Q  205 gttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagttttta 304  Q
    |||||||||| | |||| |||||||| ||||||   |||||||   | |||||||||||| |||||||| || ||||  || |||||||||||||||||     
T  33296353 gttaaaattgaccaaaatgatcaaagatgcaaatgagctaaattataggggaccaaaattatagtttttatacttaggagaccaaaattataagtttttg 33296254  T
Q  305 aaagttaggg 314  Q
    ||| ||||||    
T  33296253 aaaattaggg 33296244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 5526100 - 5526222
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| |||| |||||| | |||||||||| | |||  | ||||||| |||||  || |||| ||  |||||||  |||||||| |||    
T  5526100 aaaattggtcaaaaggaccaaaattgcaatggggctaaatcttaggggggctaaattgtggttttgttacttagggggccaaaattgcaagtttttgaaa 5526199  T
Q  308 gttag-ggggaaaagtgcacttt 329  Q
    ||||| |||||||||||||||||    
T  5526200 gttagaggggaaaagtgcacttt 5526222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 13386506 - 13386630
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | ||||| |||| | |||  | ||||||| ||||| ||| |||  || ||||||||  |||||||| |||    
T  13386506 aaaattggtcaaaaggaccaaagttgcaatggggctagatcttaggggggctaaattgtggttttggtacttatggggtcaaaattgcaagtttttgaaa 13386605  T
Q  308 gttaggggg---aaaagtgcacttt 329  Q
    |||||||||   |||||||||||||    
T  13386606 gttagggggggaaaaagtgcacttt 13386630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 55602457 - 55602380
Alignment:
Q  253 gggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt-agggggaaaagtgcacttt 329  Q
    ||||| ||||||||||||||| ||| |||||||  ||||||  |||||||| |||||| | |||||||| ||||||||    
T  55602457 gggactaaaattgtagtttttatatatagaggactaaaattgcaagtttttgaaagttaaaggggaaaaatgcacttt 55602380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 3e-47; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 28539760 - 28539916
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||| || ||||||||||||||||||||||||||||||| | |||||||| | |||||||||||||||||||||    
T  28539760 cacacgtggcatgccacgtaggcattgaccggtcaaaattggcaaaaaggatcaaagttgcaaagggactaaatcttaggggaccaaaattgtagttttt 28539859  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta-gggggaaaagtgcacttt 329  Q
    ||| ||||||| ||||||||  |||||||||||||||| ||||||||| ||||||||    
T  28539860 gtacttagagggtcaaaattgcaagtttttaaaagttaggggggaaaaatgcacttt 28539916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 174 - 328
Target Start/End: Original strand, 36486428 - 36486584
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||| || ||||||| ||||||||||||||||||||||| | |||||||| | |||||||||||||||||||||    
T  36486428 cacacgtggcatgccacgtaggcattgaccggtcaaaattgacaaaaaggatcaaagttgcaaagggactaaatcttaggggaccaaaattgtagttttt 36486527  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttaggggg--aaaagtgcactt 328  Q
    ||| |||| || ||||||||  |||||||||||||||||||||  ||||||||||||    
T  36486528 gtacttagggggtcaaaattgcaagtttttaaaagttaggggggaaaaagtgcactt 36486584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 28538837 - 28538680
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| ||| ||| |||||||| || ||||||| ||||||||||||||||||||||| |||||||||| | ||| | |||||||||||||||    
T  28538837 cacacgtggcatgccacatagacattgaccggtcaaaattgacaaaaaggatcaaagttgcaaaggggctaaatcttagggggctaaaattgtagttttt 28538738  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    ||| |||  || ||||||||  |||||||| |||||||  || |||||||||||||||    
T  28538737 gtacttaaggggtcaaaattgcaagtttttgaaagttacgggtggaaaagtgcacttt 28538680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 36485443 - 36485304
Alignment:
Q  192 taggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtattta-gaggatcaaa 290  Q
    |||||||||||| || ||||||| |||||| |||||||||||||||| || ||||||| | ||| |||||||| ||||||||||| ||| |||| |||||    
T  36485443 taggcattgaccggtcaaaattgacaaaaatgatcaaagttgcaaaggggttaaatcttagggggccaaaattatagtttttgtacttaagagg-tcaaa 36485345  T
Q  291 attataagtttttaaaagttaggg--ggaaaagtgcacttt 329  Q
    ||| ||||||||| ||||||||||  |||||| ||||||||    
T  36485344 attgtaagttttttaaagttaggggtggaaaaatgcacttt 36485304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 192 - 275
Target Start/End: Original strand, 1797255 - 1797338
Alignment:
Q  192 taggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgt 275  Q
    |||||||||||| || |||||||  |||| | ||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  1797255 taggcattgaccggtcaaaattgaaaaaaggaatcaaagttgcaaaggggctaaatcttaagggaccaaaattgtagtttttgt 1797338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 40255612 - 40255769
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| || | |||||||||||||||| || |||||||   |||| ||| ||| |||||| | || ||||||| | ||| ||||||||||||||| |    
T  40255612 cacacgtggcacgccacgtaggcattgaccggtcaaaattgatcaaaaagattaaaattgcaatggggttaaatcttagggggccaaaattgtagtttct 40255711  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    |||||||| || ||||||||  |||||||||||| |||   |||||||||||||||||    
T  40255712 gtatttagggggtcaaaattgcaagtttttaaaaattaagaggggaaaagtgcacttt 40255769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 188 - 329
Target Start/End: Original strand, 33160241 - 33160383
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||||| |||||||| |||||||||| | |||||||||| |||||  |||||||||||||| | || |||| ||       
T  33160241 cacgtaggcattgaccggtcaaaattggctaaaaggattaaagttgcaatg-ggctaaatcttaaggggtcaaaattgtagtttctatacttagggggct 33160339  T
Q  288 aaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    ||||||  |||||||| ||| |||  ||||||||||||||||||    
T  33160340 aaaattgcaagtttttgaaaattaaggggggaaaagtgcacttt 33160383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 19753038 - 19752916
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||| | |||||||||  | ||| |||||||||||||||||||| |||| ||  |||||||  |||||||| |||    
T  19753038 aaaattgaccaaaaggaccaaagatgcaatggggctaaatcatagggggccaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaa 19752939  T
Q  308 gttag-ggggaaaagtgcacttt 329  Q
    ||||| |||||||||||||||||    
T  19752938 gttaggggggaaaagtgcacttt 19752916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 25523186 - 25523073
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--gggg 315  Q
    ||||||||||||| ||||||| |||||||||| | |||  ||||||||||||||||||| |||| ||   ||||||  |||||||| |||||||  ||||    
T  25523186 aaaaggatcaaagatgcaaaggggctaaatcttagggggtcaaaattgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttaaggggg 25523087  T
Q  316 gaaaagtgcacttt 329  Q
    ||||||||||||||    
T  25523086 gaaaagtgcacttt 25523073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 28539612 - 28539673
Alignment:
Q  8 ggatggtggtactggtgatgatgaatatgggggaagatgatatgtgcctttccttcttcatct 70  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||    
T  28539612 ggatggtggtactggtgatgatgaatctgggg-aagatgatatgtgcctctccttcttcatct 28539673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 5778016 - 5777905
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggga 317  Q
    ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| || ||||||||  |||||||| ||||||||||||     
T  5778016 aaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggtcaaaattgcaagtttttgaaagttagggggg 5777917  T
Q  318 aaagtgcacttt 329  Q
    ||||||||||||    
T  5777916 aaagtgcacttt 5777905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 259 - 325
Target Start/End: Complemental strand, 2685820 - 2685754
Alignment:
Q  259 aaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggggaaaagtgca 325  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||| ||| |||||||||| ||||||    
T  2685820 aaaattgtagtttttgtacttaggggaccaaaattataagtttttgaaaattagggggaatagtgca 2685754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 2686385 - 2686479
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag 312  Q
    ||||||| ||||| ||||| |||||||||||  | |||||||||||| ||||||||||| |||   ||||||||||  |||||||||||||||||    
T  2686385 aaaaggaccaaagatgcaatgaggctaaatcataggggaccaaaattatagtttttgtacttaagagatcaaaattgcaagtttttaaaagttag 2686479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 218 - 316
Target Start/End: Original strand, 19754114 - 19754212
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggg 316  Q
    ||||||| ||||| ||||| | |||||||||  | ||| ||||||||||||||||||||||||| ||  |||||||  |||||||| ||||||||||||    
T  19754114 aaaaggaccaaagatgcaatggggctaaatcatagggggccaaaattgtagtttttgtatttagggggccaaaattgcaagtttttgaaagttaggggg 19754212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 42195259 - 42195138
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||| |||||||||| | |||||||||||||||| |||||||  ||| ||  ||||||   || ||||||||     
T  42195259 aaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttaggggaccaaaattgtagattttgtacatagggggccaaaatcgcaactttttaaag 42195160  T
Q  308 gttagggggaaaagtgcacttt 329  Q
     | |||||||||||||||||||    
T  42195159 ttaagggggaaaagtgcacttt 42195138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 16650829 - 16650952
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||  ||||||| || | ||| | ||||||||||||||| || |||| || ||||||||  ||||||||||||    
T  16650829 aaaattgaccaaaaggaccaaagatgcaaatgggctaaaccttagggggctaaaattgtagtttttatacttagggggtcaaaattgcaagtttttaaaa 16650928  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
    ||||  || |||||||||||||||    
T  16650929 gttaagggtggaaaagtgcacttt 16650952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 21835157 - 21835045
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag-gggg 316  Q
    ||||||||||||||||||||| || ||||||| | |||  |||||||||||||||||||  ||| || ||||||| | || ||||| ||| |||| ||||    
T  21835157 aaaaggatcaaagttgcaaaggggttaaatcttagggggtcaaaattgtagtttttgtacatagggggtcaaaatcacaactttttcaaacttagagggg 21835058  T
Q  317 aaaagtgcacttt 329  Q
     ||||||||||||    
T  21835057 gaaagtgcacttt 21835045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 24333074 - 24332972
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||  || ||||||| | ||||||| ||||| ||||||| || ||||||| |  ||  ||||||||||||||||    
T  24333074 cacacgtggcatgccacgtaggcattgactggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtcaaaattgtagttttt 24332975  T
Q  274 gta 276  Q
    |||    
T  24332974 gta 24332972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 42196174 - 42196282
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||  |||||||||| | ||||| |||| |||||||||||||  ||||||  |||| | | || |||||||||    
T  42196174 aaaattgaccaaaaggaccaaagatgcaaatgggctaaatcttaggggactaaaaatgtagtttttgtacatagagggccaaattcacaactttttaaaa 42196273  T
Q  308 gttaggggg 316  Q
    |||||||||    
T  42196274 gttaggggg 42196282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 245 - 320
Target Start/End: Complemental strand, 33158188 - 33158113
Alignment:
Q  245 aatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggggaaaa 320  Q
    ||||| |||||  ||||||||||||||||||| |||| |  ||||||||  |||||||| ||||||||||||||||    
T  33158188 aatcttaaggggtcaaaattgtagtttttgtacttagggtgtcaaaattgcaagtttttgaaagttagggggaaaa 33158113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 1016887 - 1016949
Alignment:
Q  258 caaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggggaaaa 320  Q
    |||||||||||||||||||  |||| || |||||||| || ||||||||| ||||||||||||    
T  1016887 caaaattgtagtttttgtacatagaagaccaaaattacaattttttaaaaattagggggaaaa 1016949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 258 - 320
Target Start/End: Complemental strand, 18154570 - 18154509
Alignment:
Q  258 caaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggggaaaa 320  Q
    ||||||||||||||||||| |||| || |||||||| ||||||||| ||||||| ||||||||    
T  18154570 caaaattgtagtttttgtacttag-gggtcaaaattgtaagtttttgaaagttaaggggaaaa 18154509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 25055529 - 25055416
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt--agggg 315  Q
    ||||||| ||||| ||||||  |||||||||| | ||| ||||||||||||||||| ||  ||| |||||||||||  |||   || ||||||  |||||    
T  25055529 aaaaggaccaaagatgcaaatgggctaaatcttagggggccaaaattgtagtttttatacataggggatcaaaattgcaagaagtttaaagttagagggg 25055430  T
Q  316 gaaaagtgcacttt 329  Q
    ||||||||||||||    
T  25055429 gaaaagtgcacttt 25055416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 5961567 - 5961494
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaat 247  Q
    |||||||| ||||||| |||| |||||||| ||||||| |||  ||||||||||||| ||||||| || |||||    
T  5961567 cacacgtggcatgtcatgtagacattgaccggttaaaaatggtcaaaaggatcaaagatgcaaaggggttaaat 5961494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 257 - 329
Target Start/End: Original strand, 25524150 - 25524225
Alignment:
Q  257 ccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---gggggaaaagtgcacttt 329  Q
    |||||||||||||||||||| |||| ||  |||||||| || ||||||||| |||   ||||||||||||||||||    
T  25524150 ccaaaattgtagtttttgtacttagggggccaaaattacaaatttttaaaaattaggggggggaaaagtgcacttt 25524225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 320
Target Start/End: Complemental strand, 2186897 - 2186785
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| || |||  |||||||||| | ||||  ||||||||||||||||||  |||| || |||||||  || ||||| |||    
T  2186897 aaaattgaccaaaaggaccaaagatgtaaaatggctaaatcttaggggattaaaattgtagtttttgtacatagaagaccaaaattgcaactttttgaaa 2186798  T
Q  308 gttagggggaaaa 320  Q
     ||||||||||||    
T  2186797 cttagggggaaaa 2186785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 5778810 - 5778933
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| ||   ||||||  |||||||| |||    
T  5778810 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggcaaaaattgcaagtttttgaaa 5778909  T
Q  308 gtt--agggggaaaagtgcacttt 329  Q
    |||  |||||||||||||||||||    
T  5778910 gttagagggggaaaagtgcacttt 5778933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 177 - 329
Target Start/End: Original strand, 5962515 - 5962667
Alignment:
Q  177 acgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgta 276  Q
    ||||| |||||||| ||| | |||||  |||||||||||  ||||||| ||||| || |||   ||||||| | | | | | |||||| |||||||||||    
T  5962515 acgtggcatgtcacatagacgttgacgggttaaaattggtcaaaaggaccaaagatgtaaattagctaaatattaggtggctaaaattatagtttttgta 5962614  T
Q  277 tttagaggatcaaaattataagtttttaaaagttagggggaaaagtgcacttt 329  Q
     |||| ||| |||||||| || ||||| ||||| || || |||||||||||||    
T  5962615 cttaggggaccaaaattacaaatttttgaaagtcagtggaaaaagtgcacttt 5962667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 22940597 - 22940719
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||||||| |||| || |||| |||||||| | | ||| | ||||||||| |||||||| |||| ||  |||||||  |||||||| |||    
T  22940597 aaaattgaccaaaaggataaaagatgaaaaggggctaaattttaggggtc-aaaattgtaatttttgtacttagggggccaaaattgcaagtttttgaaa 22940695  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
    ||||  ||||||||||||||||||    
T  22940696 gttaaggggggaaaagtgcacttt 22940719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 36486277 - 36486313
Alignment:
Q  34 atgggggaagatgatatgtgcctttccttcttcatct 70  Q
    ||||||||||||||||||||||| |||||||||||||    
T  36486277 atgggggaagatgatatgtgcctctccttcttcatct 36486313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 338
Target Start/End: Complemental strand, 20214278 - 20214191
Alignment:
Q  252 agggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt-agggggaaaagtgcactttcgcaaaata 338  Q
    |||| ||||||||||||||||||||  |||||    ||||||  |||||||| |||||| ||||||||||||||||||| || |||||    
T  20214278 aggggccaaaattgtagtttttgtacatagagtgctaaaattgcaagtttttgaaagttaagggggaaaagtgcactttagccaaata 20214191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 325
Target Start/End: Complemental strand, 1015645 - 1015492
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||| ||| |||||||||||||||||||   || ||||||||  ||||||| ||||  ||||||| | |||| ||| | |||   |||||||||| ||||    
T  1015645 cacatgtggcatgtcacgtaggcattgattggtcaaaattggggaaaaggaccaaatatgcaaagggactaattcttagggggttaaaattgtaggtttt 1015546  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttaggg--ggaaaagtgca 325  Q
    |||   || ||  ||||||| ||| ||||||||||||||||  |||||||||||    
T  1015545 gtacacagggggccaaaattgtaactttttaaaagttaggggaggaaaagtgca 1015492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 25056385 - 25056478
Alignment:
Q  238 gaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag--ggggaaaagtgcacttt 329  Q
    |||||||||||| | |||  |||||||||||||||  || |||| || ||||||||  |||||||| ||||||||  | |||||||||||||||    
T  25056385 gaggctaaatcttagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaagttaggagtggaaaagtgcacttt 25056478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 189 - 329
Target Start/End: Original strand, 3263 - 3404
Alignment:
Q  189 acgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatca 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||||||||  ||  || |||    
T  3263 acgtaggcattgaccagtaaaaattggcaaaaaggatcaaagttgcaaaggggctaaatcttaggggaccaaaattatagtttttgtacctatggggtca 3362  T
Q  289 aaattataagtttttaaaagtta-gggggaaaagtgcacttt 329  Q
    ||||| ||||||||| ||||| | ||||||||||||||||||    
T  3363 aaattgtaagtttttgaaagtaaggggggaaaagtgcacttt 3404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 3089 - 3152
Alignment:
Q  8 ggatggtggtactggtgatgatgaatatgggg-gaagatgatatgtgcctttccttcttcatct 70  Q
    |||||||||| ||||| ||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  3089 ggatggtggtcctggtaatgatgaatctggggagaagatgatatgtgcctctccttcttcatct 3152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 188 - 329
Target Start/End: Original strand, 16704451 - 16704594
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    ||||||||||||||||| | ||||||| |||||||||||| ||||||||||||||||||||| || ||| ||||||||||||||||||| |||| || ||    
T  16704451 cacgtaggcattgaccaatcaaaattgacaaaaaggatcatagttgcaaagaggctaaatcttaaaggatcaaaattgtagtttttgtacttagggggtc 16704550  T
Q  288 aaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    ||||||  |||||||| |||||||  || |||||||||||||||    
T  16704551 aaaattgcaagtttttgaaagttaagggaggaaaagtgcacttt 16704594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 188 - 320
Target Start/End: Original strand, 1829557 - 1829689
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||| | |||| || ||||| ||||||| |||||||||| | ||| ||||||||||||||||| || |||| || ||    
T  1829557 cacgtaggcattgaccggtcaaaattgaccaaaatgaccaaagatgcaaaggggctaaatcttagggggccaaaattgtagtttttatacttagggggtc 1829656  T
Q  288 aaaattataagtttttaaaagttagggggaaaa 320  Q
    ||||||  |||||||||||||||||||||||||    
T  1829657 aaaattgcaagtttttaaaagttagggggaaaa 1829689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 174 - 316
Target Start/End: Original strand, 10785853 - 10785995
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || || ||| |||||||| ||| |||||||| |||||||||||||||||||||| |||||||||| |||||   |||||||||||||||    
T  10785853 cacacgtggcgtgccatgtatgcattgactagtcaaaattggtaaaaaggatcaaagttgcaaaggggctaaatcttaaggggttaaaattgtagttttt 10785952  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttaggggg 316  Q
    ||| |||| || | ||||||  || ||||||||||||||||||    
T  10785953 gtacttagggggttaaaattgcaaatttttaaaagttaggggg 10785995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 183 - 329
Target Start/End: Original strand, 26575003 - 26575149
Alignment:
Q  183 catgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttaga 282  Q
    |||| ||||||| |||||||| || |||||||||||||||||||||||||||||||  | ||||||| | ||| |||||||||||||||||||| |||      
T  26575003 catgccacgtagacattgaccggtcaaaattggcaaaaaggatcaaagttgcaaaggagttaaatcttagggggccaaaattgtagtttttgtacttaag 26575102  T
Q  283 ggatcaaaattataagtttttaaaagttagggggaaaagtgcacttt 329  Q
    || | ||||||  |||||||| |||||||| | | ||||||||||||    
T  26575103 gggttaaaattgcaagtttttgaaagttagagaggaaagtgcacttt 26575149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 188 - 312
Target Start/End: Complemental strand, 26574765 - 26574642
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||| | | || ||||||| |||||| |||||||||||||||| |||||||||| |||||| ||||| ||||||||||||| ||||||| ||    
T  26574765 cacgtaggcattaatcggtcaaaattgacaaaaaagatcaaagttgcaaaggggctaaatcttaagggatcaaaa-tgtagtttttgtacttagaggttc 26574667  T
Q  288 aaaattataagtttttaaaagttag 312  Q
    ||||||  |||||||| ||||||||    
T  26574666 aaaattgcaagtttttgaaagttag 26574642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 5658883 - 5658760
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||||  ||| | |  |||||||||| |||||||||    
T  5658883 aaaattgaccaaaaggatcaaagttgcaaatgggctaaatcttaagggatcaaaattgtagtttttgtacatagggaactaaaattataactttttaaaa 5658784  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
     |||  ||||||||| ||||||||    
T  5658783 cttaaggggggaaaaatgcacttt 5658760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 217 - 329
Target Start/End: Complemental strand, 10784711 - 10784596
Alignment:
Q  217 aaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta---gg 313  Q
    |||||||||||||||||||||| ||||||||||   ||| ||||||||||||||||| || |||| || | ||||||  ||||||||||||||||   |     
T  10784711 aaaaaggatcaaagttgcaaaggggctaaatctttgggggccaaaattgtagtttttatacttagggggttaaaattgcaagtttttaaaagttaaggga 10784612  T
Q  314 gggaaaagtgcacttt 329  Q
    ||||||||||||||||    
T  10784611 gggaaaagtgcacttt 10784596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 217 - 338
Target Start/End: Complemental strand, 16703685 - 16703565
Alignment:
Q  217 aaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggg 316  Q
    |||||||||||||||||  ||| || ||||| | | ||| | ||||||||||||||||||||||  |||||||||||  |||||||| |||| |||||||    
T  16703685 aaaaaggatcaaagttgggaaggggttaaattttagggggctaaaattgtagtttttgtatttat-ggatcaaaattgcaagtttttgaaagataggggg 16703587  T
Q  317 aaaagtgcactttcgcaaaata 338  Q
    ||||||||||||| || |||||    
T  16703586 aaaagtgcactttagccaaata 16703565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 218 - 317
Target Start/End: Complemental strand, 17496915 - 17496815
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaaggga-ccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggg 316  Q
    ||||||| ||||| |||||||||| ||||||| | |||  ||||||||| |||||||||| ||||||| | |||||| ||||||||| ||||||||||||    
T  17496915 aaaaggaccaaagatgcaaagaggttaaatcttaggggggccaaaattgcagtttttgtacttagagggttaaaattgtaagtttttgaaagttaggggg 17496816  T
Q  317 a 317  Q
    |    
T  17496815 a 17496815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 3721739 - 3721616
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| |||||  | ||||| | ||||| ||| |||| || ||||||||  |||||||| |||    
T  3721739 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaaggggtctaaattatggttttggtacttagggggtcaaaattgcaagtttttgaaa 3721640  T
Q  308 gtt--agggggaaaagtgcacttt 329  Q
    |||  |||||||||||||||||||    
T  3721639 gttagagggggaaaagtgcacttt 3721616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 7316268 - 7316391
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| || || ||||||| |||||||||| ||||| |||||||||| ||||   ||||||| ||  |||||||  |||||||| |||    
T  7316268 aaaattgaccaaaaggaccatagatgcaaaggggctaaatcttaaggggccaaaattgtggtttcaatatttagggggccaaaattgcaagtttttgaaa 7316367  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
    ||||  ||||||||||||||||||    
T  7316368 gttaaggggggaaaagtgcacttt 7316391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 174 - 328
Target Start/End: Complemental strand, 29473238 - 29473082
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||| ||| |||| |||||||||||||||| || ||||||| |||||||||||||| |||||||| ||| || |||    || ||||||||||  |||||    
T  29473238 cacatgtggcatgccacgtaggcattgaccggtaaaaattgacaaaaaggatcaaaattgcaaaggggccaattcttggagggccaaaattgttattttt 29473139  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcactt 328  Q
    ||   ||| | | |||||||  || ||||||||| |||  |||||||||||||||||    
T  29473138 gttcatagggaaccaaaattgcaactttttaaaacttaaggggggaaaagtgcactt 29473082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 6842257 - 6842380
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||||||||| |||||| || |||||| | |||| || |||||||||||||||| |  ||| ||  |||||||  || ||||| |||    
T  6842257 aaaattggccaaaaggatcaaagatgcaaacagactaaattttaaggaactaaaattgtagtttttgcacatagggggccaaaattgcaactttttgaaa 6842356  T
Q  308 gtt--agggggaaaagtgcacttt 329  Q
     ||  |||||||||||||||||||    
T  6842357 cttagagggggaaaagtgcacttt 6842380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 8659392 - 8659269
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| ||  |||||||  |||||||| |||    
T  8659392 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaa 8659293  T
Q  308 gtt--agggggaaaagtgcacttt 329  Q
    |||  |||||||||||||||||||    
T  8659292 gttagagggggaaaagtgcacttt 8659269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 8660178 - 8660300
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||||||||||||||| |  ||||||||| | |||  | ||||||| ||||| ||| |||| || ||||||||  |||||||| |||    
T  8660178 aaaattggtcaaaaggatcaaagttgcaatggagctaaatcttaggggggctaaattgtggttttggtacttag-gggtcaaaattgcaagtttttgaaa 8660276  T
Q  308 gttag--ggggaaaagtgcacttt 329  Q
    |||||  |||||||||||||||||    
T  8660277 gttaggaggggaaaagtgcacttt 8660300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 27437955 - 27437832
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||| |||||||||||||  ||||||||| | |||  |||||||||||||||| | | ||| ||  |||||||  || ||||| |||    
T  27437955 aaaattggccaaaaggaccaaagttgcaaaggagctaaatcttagggggtcaaaattgtagtttttatttatagggggccaaaattgcaacttttttaaa 27437856  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
    ||||  ||| ||||||||||||||    
T  27437855 gttaaggggagaaaagtgcacttt 27437832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 34834553 - 34834676
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||  | ||||||| |||||  || ||||  ||||||||||  |||||||| |||    
T  34834553 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttgatacttaggagatcaaaattgcaagtttttgaaa 34834652  T
Q  308 gttagg--gggaaaagtgcacttt 329  Q
    ||||||  ||||||||||||||||    
T  34834653 gttagggagggaaaagtgcacttt 34834676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 271
Target Start/End: Complemental strand, 14822521 - 14822424
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttt 271  Q
    |||||||| | || |||||| ||||||||| || ||||| |   |||||||| |||||||||| ||| |||||||| | ||| |||||||||||||||    
T  14822521 cacacgtggcgtgccacgtaagcattgaccggtcaaaatagattaaaaggattaaagttgcaatgagactaaatcttagggggccaaaattgtagttt 14822424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 8821990 - 8821877
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt--agggg 315  Q
    ||||||| ||||||||||| |  ||||||||| | |||  | ||||||| ||||| ||| |||| ||  |||||||  |||||||| ||||||  |||||    
T  8821990 aaaaggaccaaagttgcaatggagctaaatcttaggggggctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaagttagagggg 8821891  T
Q  316 gaaaagtgcacttt 329  Q
    ||||||||||||||    
T  8821890 gaaaagtgcacttt 8821877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 8822777 - 8822890
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt--agggg 315  Q
    ||||||| |||||||||||   |||||||||| | |||  | ||||||| ||||| ||| |||| || ||||||||  |||||||| ||||||  || ||    
T  8822777 aaaaggaccaaagttgcaattgggctaaatcttaggggggctaaattgtggttttggtacttagggggtcaaaattgcaagtttttgaaagttaaagagg 8822876  T
Q  316 gaaaagtgcacttt 329  Q
    ||||||||||||||    
T  8822877 gaaaagtgcacttt 8822890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 14823515 - 14823617
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || |||||||||||||||| || ||||||| | ||||| || || ||||||| |   |||||||| | ||| ||||||||||||||| |    
T  14823515 cacacgtggcgtgccacgtaggcattgaccggtcaaaattgaccaaaagaattaaggttgcaacggttctaaatcttagggggccaaaattgtagtttct 14823614  T
Q  274 gta 276  Q
    |||    
T  14823615 gta 14823617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 342
Target Start/End: Complemental strand, 7315006 - 7314871
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||| || ||||| ||||||| |||||||||| | |||  ||||||||| |||||  || |||| ||  |||||||  |||||||| |||    
T  7315006 aaaattgaccaaaatgaccaaagatgcaaaggggctaaatcttagggggtcaaaattgttgttttgatacttaggggc-caaaattgcaagtttttgaaa 7314908  T
Q  308 gttag--ggggaaaagtgcactttcgcaaaataaata 342  Q
    |||||  ||||||||||||||||| || ||| |||||    
T  7314907 gttagagggggaaaagtgcactttagccaaaaaaata 7314871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 175 - 324
Target Start/End: Complemental strand, 18978179 - 18978029
Alignment:
Q  175 acacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttg 274  Q
    ||||||| | || |||||||||||||||| || |||||||| |||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||    
T  18978179 acacgtggcgtgccacgtaggcattgacccgtcaaaattggaaaaaaggatcaaagttgcaaaggggctaaatcttaaggggccaaaattgtagtttttg 18978080  T
Q  275 tatttagaggatcaaaattataagtttttaaaagttag-ggggaaaagtgc 324  Q
    || |||| ||  |||||||  ||| |||| |||||||| ||||||||||||    
T  18978079 tacttagggggccaaaattgaaagattttgaaagttaggggggaaaagtgc 18978029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 186 - 329
Target Start/End: Original strand, 18979072 - 18979217
Alignment:
Q  186 gtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagagga 285  Q
    |||| ||||||||||||| || ||||||||||||||||||||||||||||||  |||||||||  ||||| ||||||||||||||||| ||||||| ||     
T  18979072 gtcatgtaggcattgacctgtcaaaattggcaaaaaggatcaaagttgcaaatgggctaaatcataaggggccaaaattgtagtttttatatttaggggg 18979171  T
Q  286 tcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
     |||||||  ||||| || |||||||  ||||||||||||||||||    
T  18979172 ccaaaattgcaagttgttgaaagttagggggggaaaagtgcacttt 18979217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 195 - 329
Target Start/End: Original strand, 29968298 - 29968433
Alignment:
Q  195 gcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaatta 294  Q
    ||||||||| || ||||||||| |||| ||| |||||||||| | |||||||||| | ||||||| |||||||||||||||| |||| ||  |||||||     
T  29968298 gcattgaccggtcaaaattggccaaaatgattaaagttgcaatggggctaaatcttaggggaccagaattgtagtttttgtacttagggggccaaaattg 29968397  T
Q  295 taagtttttaaaagtt-agggggaaaagtgcacttt 329  Q
     ||||||||||||||| |||||||||||||||||||    
T  29968398 caagtttttaaaagttaagggggaaaagtgcacttt 29968433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 186 - 324
Target Start/End: Complemental strand, 18971059 - 18970920
Alignment:
Q  186 gtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagagga 285  Q
    |||| ||||||||||||| || ||||||||||||||||| ||||||||||||| || |||||||  ||||  ||||||||||||||||||| |||| ||     
T  18971059 gtcatgtaggcattgaccggtcaaaattggcaaaaaggaccaaagttgcaaaggggttaaatcttcaggggtcaaaattgtagtttttgtacttaggggg 18970960  T
Q  286 tcaaaattataagtttttaaaagttag-ggggaaaagtgc 324  Q
     |||||||  ||| |||| |||||||| ||||||||||||    
T  18970959 ccaaaattgaaagattttgaaagttaggggggaaaagtgc 18970920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 188 - 329
Target Start/End: Complemental strand, 24123029 - 24122887
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||| | ||||||| ||||| |||||||| ||||||||| | ||||| |||||| ||||||||||| |||| || ||    
T  24123029 cacgtaggcattgaccggtcaaaattgaccaaaaggaccaaagatgcaaagaagctaaatcttaggggactaaaattatagtttttgtacttagggggtc 24122930  T
Q  288 aaaattataagtttttaaaagttag-ggggaaaagtgcacttt 329  Q
    ||||||  || ||||| |||||||| |||||||| ||||||||    
T  24122929 aaaattgcaaattttttaaagttaggggggaaaaatgcacttt 24122887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 32207309 - 32207420
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggga 317  Q
    ||||||| ||||| |||||||||||||||||| ||| | |||||||||||||||||||| |||| |  ||||||||  |||||||| || |||||||||     
T  32207309 aaaaggaccaaagatgcaaagaggctaaatcttaagaggccaaaattgtagtttttgtacttagggcgtcaaaattgcaagtttttgaaggttagggggg 32207408  T
Q  318 aaagtgcacttt 329  Q
    ||||||||||||    
T  32207409 aaagtgcacttt 32207420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 188 - 330
Target Start/End: Complemental strand, 45113016 - 45112874
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||| |||||||||| |||||||  ||||| ||||||| |||||||| |||||| ||| | |||||||||||| || |||||||| ||||| ||      
T  45113016 cacgtaggtattgaccagtcaaaattgataaaaaagatcaaaattgcaaaggggctaattcttaggggaccaaaattataatttttgtacttaga-gact 45112918  T
Q  288 aaaattataagtttttaaaagttaggg-ggaaaagtgcactttc 330  Q
    ||||||| || ||||| |||||||||| |||||| |||||||||    
T  45112917 aaaattacaaatttttgaaagttagggaggaaaaatgcactttc 45112874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 22221338 - 22221461
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||||||||| || |||| |||||||||| | |||  |||||||||||||||  || |||| || ||||||||  |||||||| |||    
T  22221338 aaaattggctaaaaggatcaaagatgtaaaggggctaaatcttagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaa 22221437  T
Q  308 gttaggg--ggaaaagtgcacttt 329  Q
    |||||||  |||||||||||||||    
T  22221438 gttaggggtggaaaagtgcacttt 22221461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 22227680 - 22227803
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||||||||| || |||| |||||||||| | |||  |||||||||||||||  || |||| || ||||||||  |||||||| |||    
T  22227680 aaaattggctaaaaggatcaaagatgtaaaggggctaaatcttagggggtcaaaattgtagttttaatacttagggggtcaaaattgcaagtttttgaaa 22227779  T
Q  308 gttaggg--ggaaaagtgcacttt 329  Q
    |||||||  |||||||||||||||    
T  22227780 gttaggggtggaaaagtgcacttt 22227803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 40471121 - 40471243
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||| || ||||| | |||||||| ||||||| ||||| | ||||||||||||||||||||||  ||| ||||||| ||||||||| |||    
T  40471121 aaaattgaccaaaatgaccaaagatacaaagaggttaaatcttaaggggctaaaattgtagtttttgtattta-tggaccaaaattgtaagttttttaaa 40471219  T
Q  308 gtt--agggggaaaagtgcacttt 329  Q
    |||  |||||||||||||||||||    
T  40471220 gttaaagggggaaaagtgcacttt 40471243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 1824052 - 1824174
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||  |||||||||| | ||| |||||||||||||||||||| |||| ||| |||||||  |||||||| |||    
T  1824052 aaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagggggccaaaattgtagtttttgtacttaggggaccaaaattgcaagtttttgaaa 1824151  T
Q  308 gtt--agggggaaaagtgcactt 328  Q
    |||  |||||||||| |||||||    
T  1824152 gttagagggggaaaaatgcactt 1824174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 208 - 328
Target Start/End: Original strand, 1858497 - 1858619
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||  |||||||||| | ||| |||||||||||||||||||| |||| ||| |||||||  |||||||| |||    
T  1858497 aaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagggggccaaaattgtagtttttgtacttaggggaccaaaattgcaagtttttgaaa 1858596  T
Q  308 gtt--agggggaaaagtgcactt 328  Q
    |||  |||||||||| |||||||    
T  1858597 gttagagggggaaaaatgcactt 1858619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 208 - 320
Target Start/End: Complemental strand, 1823680 - 1823566
Alignment:
Q  208 aaaattggcaaaaaggatcaaagt-tgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaa 306  Q
    ||||||||| ||||||| ||||   ||||||  |||||||||| | |||||| ||||||||||||||||| ||||||| ||||||||  |||||||||||    
T  1823680 aaaattggccaaaaggaccaaaaaatgcaaatgggctaaatcttaggggaccgaaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaa 1823581  T
Q  307 agtt-agggggaaaa 320  Q
    |||| ||||||||||    
T  1823580 agttaagggggaaaa 1823566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 208 - 320
Target Start/End: Complemental strand, 1858125 - 1858011
Alignment:
Q  208 aaaattggcaaaaaggatcaaagt-tgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaa 306  Q
    ||||||||| ||||||| ||||   ||||||  |||||||||| | |||||| ||||||||||||||||| ||||||| ||||||||  |||||||||||    
T  1858125 aaaattggccaaaaggaccaaaaaatgcaaatgggctaaatcttaggggaccgaaattgtagtttttgtacttagagggtcaaaattgcaagtttttaaa 1858026  T
Q  307 agtt-agggggaaaa 320  Q
    |||| ||||||||||    
T  1858025 agttaagggggaaaa 1858011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 174 - 316
Target Start/End: Complemental strand, 12352082 - 12351940
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||||||||| | ||| || ||||||||| || ||||||| | |||||| | ||| |||||| |||||||||||| | |||  ||||||||||||||||    
T  12352082 cacacgtgacacgccacatatgcattgaccggtcaaaattgtccaaaagggttaaaattgcaatgaggctaaatcttagggggtcaaaattgtagttttt 12351983  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttaggggg 316  Q
    ||| |||| || ||||||||  || ||||| ||||||| ||||    
T  12351982 gtacttagggggtcaaaattgcaaatttttgaaagttaagggg 12351940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 5514098 - 5513986
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggg- 316  Q
    ||||||| ||||| ||||||| |||||||| | | |||  ||||||||||||||||||| |||| ||  |||||||  |||||||| ||||||||||||     
T  5514098 aaaaggaccaaagatgcaaaggggctaaattttaggggggcaaaattgtagtttttgtacttagggggccaaaattggaagtttttgaaagttagggggt 5513999  T
Q  317 aaaagtgcacttt 329  Q
    |||||||||||||    
T  5513998 aaaagtgcacttt 5513986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 10007737 - 10007860
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||| |||||||||| | |||||||||||||| |||| | || |||| ||  |||||||  |||||||| |||    
T  10007737 aaaattgacgaaaaggaccaaagatgcaaaggggctaaatcttaggggaccaaaattgtggtttctatacttagggggccaaaattgcaagtttttgaaa 10007836  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
    ||||  ||||||||||||||||||    
T  10007837 gttaaggggggaaaagtgcacttt 10007860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 329
Target Start/End: Complemental strand, 30569046 - 30568891
Alignment:
Q  175 acacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttg 274  Q
    ||||||| | || ||||||| |||||||  || | ||||||| ||||||| ||||| ||||||| |||||||||| | |||| ||||||| |||||||||    
T  30569046 acacgtggcgtgccacgtagacattgactggtcacaattggccaaaaggaccaaagatgcaaaggggctaaatcttaggggatcaaaattatagtttttg 30568947  T
Q  275 tatttagaggatcaaaattataagtttttaaaagttag-ggggaaaagtgcacttt 329  Q
    ||  ||   |||||||||| ||| ||||| ||| |||| |||| ||||||||||||    
T  30568946 tacctaagagatcaaaattgtaactttttgaaacttagagggggaaagtgcacttt 30568891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 2378977 - 2378868
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggga 317  Q
    ||||||| ||||| |||||| |||||| |||| |||||  ||||||| | |||||||||| ||| ||||||||||  ||| |||||||||||||  || |    
T  2378977 aaaaggaccaaagatgcaaataggctagatcttaaggggtcaaaattatggtttttgtatataggggatcaaaatcgtaactttttaaaagtta--ggaa 2378880  T
Q  318 aaagtgcacttt 329  Q
    ||||||||||||    
T  2378879 aaagtgcacttt 2378868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 10006471 - 10006348
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||| |||||||||| | ||| |||||||||| |||||  || |||| ||  |||||||  |||||||| |||    
T  10006471 aaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgttgttttgatacttagggggccaaaattgcaagtttttgaaa 10006372  T
Q  308 gttag--ggggaaaagtgcacttt 329  Q
    |||||  |||||||||||||||||    
T  10006371 gttagagggggaaaagtgcacttt 10006348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 12353301 - 12353456
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| || | || ||| ||||||||| || ||||||| | ||||| || ||| |||||| | |||||||||| | ||| |||||||| |||||||     
T  12353301 cacacgtggcacgccatgtaagcattgaccggtcaaaattgaccaaaagaattaaaattgcaatggggctaaatcttagggggccaaaattatagtttt- 12353399  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta-gggggaaaagtgcacttt 329  Q
    ||| |||| ||  |||||||  |||||||| ||||||| ||||||||||||||||||    
T  12353400 gtacttagggggccaaaattgcaagtttttgaaagttaagggggaaaagtgcacttt 12353456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 188 - 328
Target Start/End: Original strand, 45114471 - 45114612
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||  | |||| ||| |||||||||| |||| |||||||  || | ||||||||||||||| ||||  ||| | | |    
T  45114471 cacgtaggcattgaccggtcaaaattaaccaaaatgattaaagttgcaatgaggttaaatct-tagaggccaaaattgtagtttgtgtacatagtgaacc 45114569  T
Q  288 aaaattataagtttttaaaagttaggg--ggaaaagtgcactt 328  Q
    ||||||  |||||||| ||||||||||  ||||||||||||||    
T  45114570 aaaattgcaagtttttgaaagttaggggcggaaaagtgcactt 45114612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 276
Target Start/End: Complemental strand, 17844435 - 17844334
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||||| || || |||||||||||||  | ||||||||| ||||||| ||||| |  ||||||| ||||| |  ||||||||||||||||||||||    
T  17844435 cacacgtgacgtgccatgtaggcattgaccgatcaaaattggccaaaaggaccaaagatataaagaggttaaatgt-tagggaccaaaattgtagttttt 17844337  T
Q  274 gta 276  Q
    |||    
T  17844336 gta 17844334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 22220505 - 22220392
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt--agggg 315  Q
    ||||||| ||||| ||||||  |||||||||| | ||| ||||||||||||||||| ||  ||| || ||||||||  |||| ||| ||||||  |||||    
T  22220505 aaaaggaccaaagatgcaaatgggctaaatcttagggggccaaaattgtagtttttatacatagggggtcaaaattgcaagtattttaaagttagagggg 22220406  T
Q  316 gaaaagtgcacttt 329  Q
    ||||||||||||||    
T  22220405 gaaaagtgcacttt 22220392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 8388589 - 8388468
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||   |||||| |||||||||| | ||| |||||||| |||||||||||  ||| ||   ||||||  || |||||||||    
T  8388589 aaaattgggcaaaaggaccaaaaacgcaaaggggctaaatcttagggggccaaaattatagtttttgtacatagggggctaaaattgcaactttttaaaa 8388490  T
Q  308 gttagggggaaaagtgcacttt 329  Q
    ||||||||| ||||||||||||    
T  8388489 gttaggggggaaagtgcacttt 8388468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 329
Target Start/End: Complemental strand, 11287919 - 11287780
Alignment:
Q  192 taggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaa 291  Q
    ||||| |||||| || |||||||  ||||| ||||||| ||||||||  | ||| ||| | ||| ||||||||||||||| |||| |||| ||  |||||    
T  11287919 taggcgttgaccggtcaaaattgataaaaatgatcaaaattgcaaaggagttaattcttagggggccaaaattgtagtttctgtacttagtgggccaaaa 11287820  T
Q  292 ttataagtttttaaaagttaggg--ggaaaagtgcacttt 329  Q
    ||  |||||||| ||||||||||  | |||||||||||||    
T  11287819 ttgcaagttttttaaagttaggggtgaaaaagtgcacttt 11287780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 30336475 - 30336583
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttag-aggatcaaaattataagtttttaaa 306  Q
    ||||||| | ||||||| ||||| ||||||  |||||||||| |  ||   |||||||||||||||||| |||| ||| | |||||||||||||||| ||    
T  30336475 aaaattgaccaaaaggaccaaagatgcaaaatggctaaatcttagagggttaaaattgtagtttttgtacttaggaggct-aaaattataagtttttgaa 30336573  T
Q  307 agttaggggg 316  Q
    ||||||||||    
T  30336574 agttaggggg 30336583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 40469416 - 40469364
Alignment:
Q  259 aaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta 311  Q
    ||||||||| |||||||||||||||||| ||||||| || ||||| |||||||    
T  40469416 aaaattgtaatttttgtatttagaggatgaaaattacaaatttttgaaagtta 40469364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 34625174 - 34625241
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgt 275  Q
    ||||||| | ||||||||||||||||| |||||| ||||||  | ||| | |||||||||||||||||    
T  34625174 aaaattgaccaaaaggatcaaagttgcgaagagggtaaatcatagggggctaaaattgtagtttttgt 34625241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 11282125 - 11282012
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--gggg 315  Q
    |||| ||||||| |||||||| || ||||||| | |||  |||||||||  ||||||||| ||| ||  |||||||  || |||||||||||||  ||||    
T  11282125 aaaaagatcaaaattgcaaaggggttaaatcttagggggtcaaaattgtcatttttgtatatagggggccaaaattgcaactttttaaaagttaaggggg 11282026  T
Q  316 gaaaagtgcacttt 329  Q
     |||||||||||||    
T  11282025 aaaaagtgcacttt 11282012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 18488211 - 18488305
Alignment:
Q  183 catgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtat 277  Q
    |||| |||||||||||||||  || |||| |||  ||||||| ||||| ||||||| || || |||| |  || |||||||||||||||||||||    
T  18488211 catgccacgtaggcattgactggtcaaaactggtcaaaaggaccaaagatgcaaaggggttatatcttagagggccaaaattgtagtttttgtat 18488305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 30335756 - 30335643
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--gggg 315  Q
    ||||||| ||||| ||||||| |||||||||| | |||   ||||||||| |||||||| |||| |   |||||||  ||||||||||||||||  || |    
T  30335756 aaaaggaccaaagatgcaaaggggctaaatcttagggggttaaaattgtaatttttgtacttagcgagccaaaattgcaagtttttaaaagttaagggtg 30335657  T
Q  316 gaaaagtgcacttt 329  Q
    ||||| ||||||||    
T  30335656 gaaaaatgcacttt 30335643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 226 - 329
Target Start/End: Complemental strand, 43661374 - 43661269
Alignment:
Q  226 caaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg--gaaaagtg 323  Q
    ||||| ||||||| |||||||||| | ||| |||||||| |||||||||||  ||  ||| ||||||| ||| ||||| ||| ||| |||  ||||||||    
T  43661374 caaagatgcaaaggggctaaatcttagggggccaaaattatagtttttgtacataagggaccaaaattgtaacttttttaaaattaagggtagaaaagtg 43661275  T
Q  324 cacttt 329  Q
    ||||||    
T  43661274 cacttt 43661269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 24359915 - 24359858
Alignment:
Q  227 aaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagagg 284  Q
    |||| |||||| ||||||||||| | |||  |||||||||||||||||||| ||||||    
T  24359915 aaagatgcaaataggctaaatcttagggggtcaaaattgtagtttttgtatatagagg 24359858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 328
Target Start/End: Original strand, 43661807 - 43661919
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--gggg 315  Q
    ||||||| ||||| |||||   ||| |||||| | ||| |||||||| |||||||||||  |||||||| ||||||  || ||||| |||||||  || |    
T  43661807 aaaaggaccaaagatgcaattgggcgaaatcttagggggccaaaattttagtttttgtacatagaggattaaaattgcaactttttgaaagttaagggtg 43661906  T
Q  316 gaaaagtgcactt 328  Q
    |||||||||||||    
T  43661907 gaaaagtgcactt 43661919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 5e-27; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 188 - 329
Target Start/End: Original strand, 36450875 - 36451017
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    ||||||||||||||||||| ||||||||| |||||||||||| ||||||||  ||||| |||   ||| || |||||||||||| |||| |||| ||| |    
T  36450875 cacgtaggcattgaccagtcaaaattggccaaaaggatcaaaattgcaaaggagctaattcttggggggccgaaattgtagtttctgtacttaggggacc 36450974  T
Q  288 aaaattataagtttttaaaagtt-agggggaaaagtgcacttt 329  Q
    ||||||  |||||||| |||||| |||||||||||||||||||    
T  36450975 aaaattgcaagtttttgaaagttaagggggaaaagtgcacttt 36451017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 174 - 314
Target Start/End: Complemental strand, 22587661 - 22587522
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| || ||||||||||||  || ||||||||| ||||||| ||||| |||||||||||||||||| | ||| |||||||||||||||||    
T  22587661 cacacgtggcatgccatgtaggcattgactggtcaaaattggccaaaaggaccaaagatgcaaagaggctaaatcttagggggccaaaattgtagttttt 22587562  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttaggg 314  Q
    |||  ||| ||| |||||||  || ||||| ||||||||||    
T  22587561 gta-ataggggaccaaaattggaactttttgaaagttaggg 22587522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 22848308 - 22848195
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggg- 316  Q
    ||||||| ||||| ||||||| |||||||||| | ||  ||||||||||||||||||||||||| ||| |||||||  |||||||| ||||||||||||     
T  22848308 aaaaggaccaaagctgcaaaggggctaaatcttagggagccaaaattgtagtttttgtatttaggggaccaaaattgcaagtttttgaaagttagggggg 22848209  T
Q  317 -aaaagtgcacttt 329  Q
     |||||||||||||    
T  22848208 taaaagtgcacttt 22848195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 36449939 - 36449782
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||| || |||| |||||||||||||||| || ||||||||  |||||||||||| |||||||| | |||| |||   |||  ||||||||||||||||    
T  36449939 cacacatggcatgccacgtaggcattgaccggtcaaaattggtcaaaaggatcaaaattgcaaagggcctaattcttgggggggcaaaattgtagttttt 36449840  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    ||| |||| ||  |||||||  |||||||| |||||||  ||||||||||||||||||    
T  36449839 gtacttagggggccaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttt 36449782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 7899822 - 7899979
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || |||||| ||||||||| || ||||||| | |||| ||| |||||| ||| | |||||||||| | ||| | ||||||||||||| |    
T  7899822 cacacgtggcgtgccacgtatgcattgaccggtcaaaattgaccaaaaagattaaagttacaatggggctaaatcttagggggctaaaattgtagtttct 7899921  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    ||| |||| ||| |||||||  |||||||| |||||||  ||||||||||||||||||    
T  7899922 gtacttaggggaccaaaattgcaagtttttgaaagttaaggggggaaaagtgcacttt 7899979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 8535653 - 8535751
Alignment:
Q  231 ttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggggaaaagtgcacttt 329  Q
    |||||||| |||||| ||| | |||  |||||||||||||| | || ||| ||||||||||||| |||||||||||||||||| ||||||||| |||||    
T  8535653 ttgcaaaggggctaattcttagggggtcaaaattgtagtttctctacttaaaggatcaaaattacaagtttttaaaagttaggaggaaaagtgtacttt 8535751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 190 - 329
Target Start/End: Original strand, 38840449 - 38840590
Alignment:
Q  190 cgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaa 289  Q
    |||||||||||||| || |||||||   |||||||| ||| |||||| | |||||||||| | ||| | |||||||||||||||||| |||| ||   ||    
T  38840449 cgtaggcattgaccggtcaaaattgatcaaaaggattaaaattgcaatggggctaaatcttagggggctaaaattgtagtttttgtacttagggggctaa 38840548  T
Q  290 aattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    ||||  |||||||| |||||||  ||||||||||||||||||    
T  38840549 aattgcaagtttttgaaagttaaggggggaaaagtgcacttt 38840590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 208 - 325
Target Start/End: Original strand, 18300699 - 18300815
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||| |||||||| |  ||||  ||||||||||||||||||| |||| || ||||||||  |||||| | |||    
T  18300699 aaaattgtccaaaaggaccaaagatgcaaaggggctaaat-tataggggtcaaaattgtagtttttgtacttagggggtcaaaattgcaagtttatgaaa 18300797  T
Q  308 gttagggggaaaagtgca 325  Q
    ||||||||||||||||||    
T  18300798 gttagggggaaaagtgca 18300815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 24476868 - 24476937
Alignment:
Q  258 caaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggggaaaagtgcact 327  Q
    ||||||||||||||||||| |||| ||| |||||||| ||||||||||||||| |||| |||||||||||    
T  24476868 caaaattgtagtttttgtacttaggggaccaaaattacaagtttttaaaagttgggggaaaaagtgcact 24476937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 204 - 329
Target Start/End: Complemental strand, 18904498 - 18904371
Alignment:
Q  204 agttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagttttt 303  Q
    ||||||||||||| ||||||| ||||| || |||| |||||| ||| | || ||||||||||||||||||||| |||  ||  |||||||  | ||||||    
T  18904498 agttaaaattggccaaaaggaccaaagatgtaaaggggctaattcttagggaaccaaaattgtagtttttgtacttaaggggccaaaattgcacgttttt 18904399  T
Q  304 aaaagtta--gggggaaaagtgcacttt 329  Q
     |||||||  ||||||||||||||||||    
T  18904398 gaaagttaaggggggaaaagtgcacttt 18904371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 23869519 - 23869631
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggg-gg 316  Q
    ||||||||||||| ||||||| |||||||||| | ||  | ||||||||||||||||||||||| ||  |||||||  |||||||||||  | |||| ||    
T  23869519 aaaaggatcaaagatgcaaaggggctaaatcttagggagctaaaattgtagtttttgtatttagggggccaaaattgcaagtttttaaagttaagggtgg 23869618  T
Q  317 aaaagtgcacttt 329  Q
    |||||||||||||    
T  23869619 aaaagtgcacttt 23869631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 209 - 276
Target Start/End: Original strand, 22587929 - 22587996
Alignment:
Q  209 aaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgta 276  Q
    |||||||| ||||||| ||||| ||||||| |||||||||| ||||| ||||||||||||||||||||    
T  22587929 aaattggccaaaaggaccaaagatgcaaaggggctaaatcttaaggggccaaaattgtagtttttgta 22587996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 13030416 - 13030296
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||| || ||||| ||||||   ||||||||| | ||| | ||||||||| |||||||| |||| ||  |||||||| |||||||| |||    
T  13030416 aaaattgaccaaaatgaccaaagatgcaaaagagctaaatcttagggggcaaaaattgtaatttttgtacttaggggc-caaaattacaagtttttgaaa 13030318  T
Q  308 gttagggggaaaagtgcacttt 329  Q
    ||||||||||||||||||||||    
T  13030317 gttagggggaaaagtgcacttt 13030296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 312
Target Start/End: Original strand, 11258785 - 11258889
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||  ||||| | |||||||||| | ||||| |||||||||||||||||| |||| ||  |||||||  |||||||| |||    
T  11258785 aaaattgaccaaaaggatcaaatctgcaatggggctaaatcttaggggactaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaa 11258884  T
Q  308 gttag 312  Q
    |||||    
T  11258885 gttag 11258889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 13570531 - 13570654
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    |||||||||||||||||||||||||| |||| | |||| |||   |||||||||||| ||||||||||| |||  |||  ||||||  |||||||| |||    
T  13570531 aaaattggcaaaaaggatcaaagttgtaaagggactaattcttgggggaccaaaattatagtttttgtacttaagggactaaaattgcaagtttttgaaa 13570630  T
Q  308 gttagggg--gaaaagtgcacttt 329  Q
    |||| |||  ||||| ||||||||    
T  13570631 gttatgggtagaaaaatgcacttt 13570654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 231 - 329
Target Start/End: Complemental strand, 8534685 - 8534587
Alignment:
Q  231 ttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagttttt-aaaagttagggggaaaagtgcacttt 329  Q
    ||||||||||||||| |||   ||||||||||||||||||| | || ||| |||||||||||| ||||||||| |||| | ||||||||||| |||||||    
T  8534685 ttgcaaagaggctaattcttg-gggaccaaaattgtagtttctatacttaaaggatcaaaattgtaagtttttgaaaattaagggggaaaagagcacttt 8534587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 18797374 - 18797250
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||| ||||| ||||||| |||||||| | | |||  |||||||||||||||  || |||  || ||||||||  |||||||| |||    
T  18797374 aaaattggctaaaaggaccaaagatgcaaaggggctaaattttagggggtcaaaattgtagttttaatacttaaggggtcaaaattgcaagtttttgaaa 18797275  T
Q  308 gttaggg---ggaaaagtgcacttt 329  Q
    |||||||   |||||||||||||||    
T  18797274 gttagggggtggaaaagtgcacttt 18797250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 18299500 - 18299377
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||| ||||||  |||||||||  | ||| ||||||||||||||||| || ||||  |  |||||||  |||||||| |||    
T  18299500 aaaattgaccaaaaggatcaaagatgcaaaagggctaaatcatagggggccaaaattgtagtttttatacttaggtggccaaaattgaaagtttttgaaa 18299401  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
    ||||  || |||||||||||||||    
T  18299400 gttacgggtggaaaagtgcacttt 18299377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 329
Target Start/End: Complemental strand, 41878234 - 41878096
Alignment:
Q  195 gcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaatt- 293  Q
    ||||||||| || ||||||| | |||| ||| ||| |||||| | |||||||||| ||||| ||||||||||||||| |||| |||| ||  |||||||     
T  41878234 gcattgaccggtcaaaattgaccaaaaagattaaaattgcaatggggctaaatcttaaggggccaaaattgtagtttctgtacttagggggccaaaattg 41878135  T
Q  294 --ataagtttttaaaagtt-agggggaaaagtgcacttt 329  Q
      |  ||||||| |||||| |||||| ||||||||||||    
T  41878134 caaatagtttttgaaagttaaggggggaaagtgcacttt 41878096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 1410119 - 1410060
Alignment:
Q  216 caaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgt 275  Q
    |||||||||| ||||||||||| ||||||||||| | ||||||||||||||  |||||||    
T  1410119 caaaaaggattaaagttgcaaataggctaaatcttaggggaccaaaattgtcatttttgt 1410060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 7898852 - 7898695
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||| ||||||||  || |||||||   |||||||| ||| |||||| | |||||||||| | ||| ||||||||||||||| |    
T  7898852 cacacgtggcatgccacgtaagcattgactggtcaaaattgatcaaaaggattaaaattgcaatggggctaaatcttagggggccaaaattgtagtttct 7898753  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
     || ||||  |   ||||||  |||||||| |||||||  ||| ||||||||||||||    
T  7898752 atacttaggaggcaaaaattgcaagtttttgaaagttaaggggagaaaagtgcacttt 7898695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 277
Target Start/End: Complemental strand, 32739795 - 32739709
Alignment:
Q  191 gtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtat 277  Q
    |||||| |||||| || ||||||||| ||| ||| ||||| || |||  | |||||||| ||||| |||||||||||||||||||||    
T  32739795 gtaggcgttgaccggtcaaaattggccaaatggaccaaagatggaaaatgactaaatcttaaggggccaaaattgtagtttttgtat 32739709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 38839389 - 38839296
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttag 281  Q
    |||||| ||||||||  || ||||||| | |||| ||| ||| |||||| | |||||||||| | ||| |||||||||||||||||||| ||||    
T  38839389 cacgtaagcattgacgggtcaaaattgaccaaaatgattaaaattgcaatggggctaaatcttagggggccaaaattgtagtttttgtagttag 38839296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 11938763 - 11938885
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    |||||||||||||| ||||||| |||||||   ||||| ||| | |||  ||||||| || |||||||| ||||  || |||||||  |||||||| |||    
T  11938763 aaaattggcaaaaatgatcaaaattgcaaaagagctaattcttaggggggcaaaattata-tttttgtacttaggagaccaaaattgcaagtttttgaaa 11938861  T
Q  308 gttaggg--ggaaaagtgcacttt 329  Q
    |||||||  |||||||||||||||    
T  11938862 gttaggggtggaaaagtgcacttt 11938885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 18869007 - 18868928
Alignment:
Q  252 agggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggg--ggaaaagtgcacttt 329  Q
    ||||| ||||||||||||||||||||||||  |  |||||||  |||||||| ||||||||||  |||||||| ||||||    
T  18869007 agggatcaaaattgtagtttttgtatttaggaggccaaaattgcaagtttttgaaagttaggggtggaaaagtacacttt 18868928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 11257783 - 11257645
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgacca-gttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttt 272  Q
    |||||||| |||| |||| |||| ||||| | || |||||||   |||||||||||| |||||| | |||||||||| | | | ||||||||||||||||    
T  11257783 cacacgtggcatgccacgcaggcgttgactatgtcaaaattgatcaaaaggatcaaatttgcaatggggctaaatcttaggaggccaaaattgtagtttt 11257684  T
Q  273 tgtatttagaggatcaaaattataagtttttaaaagttag 312  Q
    | || |||| || | ||||||  |||||||| ||||||||    
T  11257683 tatacttag-ggtttaaaattgcaagtttttgaaagttag 11257645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 13568054 - 13567976
Alignment:
Q  253 gggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag--ggggaaaagtgcacttt 329  Q
    |||| |||||||||||||||||||||||| ||  |||||||  |||||||| ||| ||||  |||||||||| ||||||    
T  13568054 gggatcaaaattgtagtttttgtatttagggggccaaaattgcaagtttttgaaacttagaaggggaaaagtacacttt 13567976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 18906012 - 18906084
Alignment:
Q  259 aaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag--ggggaaaagtgcacttt 329  Q
    |||||||||||||||||| |||| ||   ||||||  |||||||| ||||||||  |||||||||||||||||    
T  18906012 aaaattgtagtttttgtacttagggggctaaaattgcaagtttttgaaagttagaaggggaaaagtgcacttt 18906084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 5e-27; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 188 - 329
Target Start/End: Original strand, 39699721 - 39699863
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||| | |||||||| |||||||||| | |||||||||| | ||| ||||||||||||||| |||| |||| || ||    
T  39699721 cacgtaggcattgaccggtcaaaattgaccaaaaggattaaagttgcaatggggctaaatcttagggggccaaaattgtagtttctgtacttagggggtc 39699820  T
Q  288 aaaattataagtttttaaaagtta-gggggaaaagtgcacttt 329  Q
    ||||||  ||||| || ||||||| ||||||||||||||||||    
T  39699821 aaaattgcaagttattgaaagttaggggggaaaagtgcacttt 39699863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 52275095 - 52274972
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||||||||||| |||||| |||||||||||| | ||| |||||||||||||||||||| |||| || ||||||||  |||||||| |||    
T  52275095 aaaattgaccaaaaggatcaaatttgcaatgaggctaaatcttaggggcccaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaa 52274996  T
Q  308 gttaggggg--aaaagtgcacttt 329  Q
    |||||||||  |||||||||||||    
T  52274995 gttaggggggtaaaagtgcacttt 52274972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 174 - 281
Target Start/End: Original strand, 44411906 - 44412013
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || |||||||||||||||| || ||||||||||||||||||||||||||||||| | |||||||| || ||   |||||||||||||||    
T  44411906 cacacgtggcgtgccacgtaggcattgaccggtcaaaattggcaaaaaggatcaaagttgcaaagggcctaaatcttaaaggggtaaaattgtagttttt 44412005  T
Q  274 gtatttag 281  Q
    ||| ||||    
T  44412006 gtacttag 44412013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 14999442 - 14999289
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||| || |||| |||||||||||||||| || ||||||| |||||||||||||||||||| |   |||||||   |  ||| ||||||||||||||||    
T  14999442 cacacatggcatgccacgtaggcattgaccggtcaaaattgacaaaaaggatcaaagttgcagatgagctaaat---agaggatcaaaattgtagttttt 14999346  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta-gggggaaaagtgcacttt 329  Q
    ||| |||| || ||||||||  |||||||| ||||||| ||||||||||| ||||||    
T  14999345 gtacttagggggtcaaaattgcaagtttttgaaagttaggggggaaaagtacacttt 14999289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 36613888 - 36614001
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggg--g 315  Q
    |||||||  ||||||||||||||||||||||| | |||  ||||||||||||||||||| |||| ||  |||||||| |||||||||||||||||||  |    
T  36613888 aaaaggactaaagttgcaaagaggctaaatcttagggggtcaaaattgtagtttttgtacttagggggccaaaattacaagtttttaaaagttaggggag 36613987  T
Q  316 gaaaagtgcacttt 329  Q
    ||||| ||||||||    
T  36613988 gaaaaatgcacttt 36614001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 188 - 313
Target Start/End: Complemental strand, 33088214 - 33088089
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    ||||||||| |||||| |||||||||||| |||||||  ||||  |||||  |||||||||| ||||||  ||||||||||||||| |||||||  |||     
T  33088214 cacgtaggctttgaccggttaaaattggccaaaaggactaaagaagcaaatgggctaaatcttaagggaataaaattgtagtttttatatttaggagata 33088115  T
Q  288 aaaattataagtttttaaaagttagg 313  Q
    ||||||| |||||||| |||||||||    
T  33088114 aaaattacaagtttttgaaagttagg 33088089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 45149910 - 45150067
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctca-agggaccaaaattgtagtttt 272  Q
    |||||||| |||  ||||||||| |||||| || ||||||||| ||||||||||||| ||||||| |||||||||| |  |||  ||||||||| |||||    
T  45149910 cacacgtggcattccacgtaggctttgaccggtcaaaattggccaaaaggatcaaagatgcaaaggggctaaatcttagggggggcaaaattgttgtttt 45150009  T
Q  273 tgtatttagaggatcaaaattataagtttttaaaagtta-gggggaaaagtgcacttt 329  Q
    |||| |||  ||  |||||||  |||||||| ||||||| ||||||||||||||||||    
T  45150010 tgtacttaaggggccaaaattgcaagtttttgaaagttaggggggaaaagtgcacttt 45150067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 24422927 - 24422804
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||||||||||| |||||| | |||||||||| | ||| |||||||||||||||||||| |||| || ||||||||  |||||||| |||    
T  24422927 aaaattgaccaaaaggatcaaatttgcaatggggctaaatcttagggggccaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttgaaa 24422828  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
    ||||  |||| |||||||||||||    
T  24422827 gttaagggggtaaaagtgcacttt 24422804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 208 - 320
Target Start/End: Complemental strand, 43058912 - 43058800
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||| || |||| |||||||||| |  || | |||||||||||||||||| |||| || ||||||||  |||||||| |||    
T  43058912 aaaattgaccaaaaggatcaaagatgtaaaggggctaaatcttagagggctaaaattgtagtttttgtacttagggggtcaaaattgcaagtttttcaaa 43058813  T
Q  308 gttagggggaaaa 320  Q
    |||||||||||||    
T  43058812 gttagggggaaaa 43058800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 51684493 - 51684370
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||| ||||| ||||||| |||||||||| | ||| ||||||||||||||||| ||  ||| ||  |||||||  || |||||||||    
T  51684493 aaaattggccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgtagtttttatacatagggggccaaaattgcaactttttaaaa 51684394  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
    ||||  ||||||||||||||||||    
T  51684393 gttaaggggggaaaagtgcacttt 51684370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 183 - 314
Target Start/End: Original strand, 14999904 - 15000035
Alignment:
Q  183 catgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttaga 282  Q
    |||| |||||||||||||||  || ||||||| ||||||||||||||||||||||  | |||||| | | | |  ||  ||||||| ||||||| ||||     
T  14999904 catgccacgtaggcattgacaggtcaaaattgacaaaaaggatcaaagttgcaaatggactaaattttaggtggtcatgattgtagattttgtacttagg 15000003  T
Q  283 ggatcaaaattataagtttttaaaagttaggg 314  Q
    |||||||||||  |||||||||||||||||||    
T  15000004 ggatcaaaattgcaagtttttaaaagttaggg 15000035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 205 - 329
Target Start/End: Original strand, 51685736 - 51685862
Alignment:
Q  205 gttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagttttta 304  Q
    |||||||||||| ||||||| ||||| ||||||| |||||||||| | |||  |||||||||||||||||||  ||||||  ||||||   || |||||     
T  51685736 gttaaaattggccaaaaggaccaaagatgcaaaggggctaaatcttagggggtcaaaattgtagtttttgtacatagagggccaaaatcgcaactttttg 51685835  T
Q  305 aaagtt--agggggaaaagtgcacttt 329  Q
    ||||||  |||||||||||||||||||    
T  51685836 aaagttagagggggaaaagtgcacttt 51685862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 191 - 329
Target Start/End: Complemental strand, 39698706 - 39698567
Alignment:
Q  191 gtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaa 290  Q
    ||||| ||||||| || ||||||| | |||||||| |||||||||| ||||||||||||  || | |||||||| |||||| |||| |||| ||  ||||    
T  39698706 gtaggtattgaccggtcaaaattgaccaaaaggattaaagttgcaacgaggctaaatct-tagtggccaaaattatagtttctgtacttagggggccaaa 39698608  T
Q  291 attataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    |||  ||||||||||||||||  ||||| ||||||||||||    
T  39698607 attgaaagtttttaaaagttaaggggggtaaagtgcacttt 39698567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 24426049 - 24426172
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||| |||||| |||||| | |||||||||| | ||||| |||||||||||||||||| |||| ||  |||||||  |||||||| |||    
T  24426049 aaaattgaccaaaagtatcaaatttgcaatggggctaaatcttaggggactaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaa 24426148  T
Q  308 gtt--agggggaaaagtgcacttt 329  Q
    |||  |||||| ||||||||||||    
T  24426149 gttagaggggggaaagtgcacttt 24426172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 340
Target Start/End: Complemental strand, 31194178 - 31194048
Alignment:
Q  210 aattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagt 309  Q
    ||||||||||||||| ||||| |||||| ||||||||||| || || |||||||| |||||||||||  |   ||  |||| |  ||| |||||||||||    
T  31194178 aattggcaaaaaggaccaaagatgcaaaaaggctaaatcttaaagggccaaaattttagtttttgtacatgtggggccaaattcgtaactttttaaaagt 31194079  T
Q  310 tagggggaaaagtgcactttcgcaaaataaa 340  Q
    ||||| ||||||||| |||| | ||||||||    
T  31194078 tagggtgaaaagtgccctttagaaaaataaa 31194048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 45148741 - 45148585
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||| ||| |||| ||||||||| |||||| || ||||||||| ||||||| ||||| ||||||| || ||||||| | |||  ||||||||||||||||    
T  45148741 cacatgtggcatgccacgtaggctttgaccggtcaaaattggccaaaaggaccaaagatgcaaaggggttaaatcttaggggggcaaaattgtagttttt 45148642  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
     || |||| ||  |||||||  |||||||| |||||||   ||| |||||||||||||    
T  45148641 -tacttagggggccaaaattgcaagtttttgaaagttaagcgggaaaaagtgcacttt 45148585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 188 - 329
Target Start/End: Original strand, 45157163 - 45157305
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||  || ||||||| | ||||||| ||||| ||||||| || ||||||| || ||  |||||||||||||||||||  ||| ||  |    
T  45157163 cacgtaggcattgactggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagggtcaaaattgtagtttttgtacatagggggcc 45157262  T
Q  288 aaaattataagtttttaaaagtta-gggggaaaagtgcacttt 329  Q
    ||||||  |||||||| ||| ||| ||||| ||||||||||||    
T  45157263 aaaattgcaagtttttgaaacttagggggggaaagtgcacttt 45157305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 11437173 - 11437296
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||| || |||  || ||||||| | ||| |||||||||||||||||||| |||  ||| |||||||  |||||||| |||    
T  11437173 aaaattgaccaaaaggatcaaagatgtaaaagggttaaatcttagggggccaaaattgtagtttttgtacttaagggaccaaaattgcaagtttttgaaa 11437272  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
    ||||  |||| |||||||||||||    
T  11437273 gttaagggggaaaaagtgcacttt 11437296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 40384852 - 40384784
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgta 276  Q
    ||||||||| ||||||| ||||| |||||||||||||||| | | |||| |||||||||||||||||||    
T  40384852 aaaattggccaaaaggaccaaagatgcaaagaggctaaattttaggggatcaaaattgtagtttttgta 40384784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 43378697 - 43378809
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt-aggggg 316  Q
    |||||||| |||| |||||||  ||||||||| | | |  |||||||||| |||||||| |||| ||||||||||| ||||||||| |||||| || | |    
T  43378697 aaaaggattaaagatgcaaaggtgctaaatcttaggtggtcaaaattgtaatttttgtacttaggggatcaaaattgtaagtttttgaaagttaagagag 43378796  T
Q  317 aaaagtgcacttt 329  Q
    |||||||||||||    
T  43378797 aaaagtgcacttt 43378809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 320
Target Start/End: Complemental strand, 39152092 - 39151945
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||| ||| |||| |||||||||||||||  || ||||||| | ||||||| ||||| ||||||| || ||||||| || |   ||||||||||||||||    
T  39152092 cacatgtggcatgccacgtaggcattgactggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttaaagagtcaaaattgtagttttt 39151993  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtt-agggggaaaa 320  Q
    |||  ||| ||  |||||||| |||||||| ||| || ||||||||||    
T  39151992 gtacatagggggccaaaattacaagtttttgaaacttaagggggaaaa 39151945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 226 - 329
Target Start/End: Original strand, 33088609 - 33088714
Alignment:
Q  226 caaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt--agggggaaaagtg 323  Q
    ||||||||||||| |||||||||| | ||   ||||||||||||||||||| ||| ||| ||||||||  |||||||| || |||  || ||||||||||    
T  33088609 caaagttgcaaaggggctaaatcttagggaggcaaaattgtagtttttgtacttaaagggtcaaaattgcaagtttttgaatgttagagagggaaaagtg 33088708  T
Q  324 cacttt 329  Q
    ||||||    
T  33088709 cacttt 33088714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 39153056 - 39153158
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||||||||||||  || ||||||| | ||||||| ||||| ||||||| || ||||||| |  ||  ||||||||||||||||    
T  39153056 cacacgtggcatgccacgtaggcattgactggtcaaaattgaccaaaaggaccaaagatgcaaaggggttaaatcttagagggtcaaaattgtagttttt 39153155  T
Q  274 gta 276  Q
    |||    
T  39153156 gta 39153158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 50680458 - 50680336
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||| ||||||| || ||||||| | ||||| |||||| |||||||| || |||| ||  |||||||  ||||||||  ||    
T  50680458 aaaattgaccaaaaggatcaaagatgcaaaggggttaaatcttaggggactaaaattatagtttttatacttagggggccaaaattgcaagtttttggaa 50680359  T
Q  308 gtt-agggggaaaagtgcacttt 329  Q
    ||| |||||||||| ||||||||    
T  50680358 gttaagggggaaaaatgcacttt 50680336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 52276147 - 52276260
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag--ggg 315  Q
    |||||||||||| |||||| | |||||||||| | ||||| ||| || ||||||||||| |||| ||  |||||||| || ||||| ||||||||  |||    
T  52276147 aaaaggatcaaatttgcaatggggctaaatcttaggggactaaatttatagtttttgtacttagggggccaaaattacaaatttttgaaagttagaaggg 52276246  T
Q  316 gaaaagtgcacttt 329  Q
    | ||||||||||||    
T  52276247 ggaaagtgcacttt 52276260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 232 - 329
Target Start/End: Original strand, 23980464 - 23980563
Alignment:
Q  232 tgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt--agggggaaaagtgcacttt 329  Q
    ||||||| |||||||||| | | |||||||||| ||||||||||| |||| |   |||||||  |||||||| ||||||  |||||||||||||||||||    
T  23980464 tgcaaaggggctaaatcttaggagaccaaaattatagtttttgtacttagggagccaaaattgcaagttttttaaagttagagggggaaaagtgcacttt 23980563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 35594342 - 35594221
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||| ||||| ||||||| |||||||| | | ||| | ||||||||||||||  || |||| || ||||||||  |||||||| |||    
T  35594342 aaaattggctaaaaggaccaaagatgcaaaggggctaaattttaggggtc-aaaattgtagttttaatacttagggg-tcaaaattgcaagtttttgaaa 35594245  T
Q  308 gttaggg--ggaaaagtgcacttt 329  Q
    |||||||  |||||||||||||||    
T  35594244 gttaggggtggaaaagtgcacttt 35594221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 329
Target Start/End: Complemental strand, 41364937 - 41364833
Alignment:
Q  226 caaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggg-gaaaagtgc 324  Q
    ||||||||||| | |||||||||| | |||  | ||||||| ||||| |||||||| ||  |||||||  |||||||| ||||||||||| |||||||||    
T  41364937 caaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtatttagggggccaaaattgcaagtttttgaaagttaggggagaaaagtgc 41364838  T
Q  325 acttt 329  Q
    |||||    
T  41364837 acttt 41364833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 52827474 - 52827351
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||    ||||||| ||||| ||| |||| || ||||||||  |||||||| |||    
T  52827474 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggttaaattgtggttttggtacttagggggtcaaaattgcaagtttttgaaa 52827375  T
Q  308 gttag--ggggaaaagtgcacttt 329  Q
    |||||  |||||||||||||||||    
T  52827374 gttagggggggaaaagtgcacttt 52827351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 44404603 - 44404496
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || |||||||||||||||| || ||||||| | |||| || ||||| ||||||  |||||||| | | ||| |||||||| ||||||||    
T  44404603 cacacgtggcgtgccacgtaggcattgaccggtcaaaattgaccaaaatgaccaaagatgcaaattggctaaattttagggggccaaaattatagttttt 44404504  T
Q  274 gtatttag 281  Q
    ||| ||||    
T  44404503 gtacttag 44404496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 342
Target Start/End: Complemental strand, 2940382 - 2940257
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt-aggggg 316  Q
    |||||||||||| ||||||||||| ||||||| | |||| |||||||||  |||||||   |||||| ||||||| | ||  |||||||| || ||||||    
T  2940382 aaaaggatcaaaattgcaaagaggttaaatcttaggggatcaaaattgttatttttgttcatagagggtcaaaatcacaacattttaaaacttaaggggg 2940283  T
Q  317 aaaagtgcactttcgcaaaataaata 342  Q
    |||| | |||||| || ||| |||||    
T  2940282 aaaaatacactttagccaaaaaaata 2940257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 7674603 - 7674532
Alignment:
Q  258 caaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag-ggggaaaagtgcacttt 329  Q
    ||||||||||||||||||| |||| ||  |||||||  ||||||||||||||||| ||||||||| |||||||    
T  7674603 caaaattgtagtttttgtacttag-ggcccaaaattgcaagtttttaaaagttaggggggaaaagggcacttt 7674532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 11436169 - 11436046
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||| | ||||| ||||||  || ||||||| | ||| ||||||||||||||||| || ||| | |  |||||||  |||||||| |||    
T  11436169 aaaattgaccaaaagaaccaaagatgcaaatgggttaaatcttagggggccaaaattgtagtttttatacttaaaaggccaaaattgcaagtttttgaaa 11436070  T
Q  308 gtt--agggggaaaagtgcacttt 329  Q
    |||  |||||||||||||||||||    
T  11436069 gttaaagggggaaaagtgcacttt 11436046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 312
Target Start/End: Original strand, 43059980 - 43060084
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||   ||||||||| |||||  ||||||||||||||||||| |||  || ||||||||  || ||||| |||    
T  43059980 aaaattgaccaaaaggaccaaagatgcaaatgagctaaatcttaaggggtcaaaattgtagtttttgtacttaaggggtcaaaatttcaaatttttgaaa 43060079  T
Q  308 gttag 312  Q
    |||||    
T  43060080 gttag 43060084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 30249497 - 30249587
Alignment:
Q  241 gctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    ||||||||| |||||  |||||||||||||||||||  || | ||||||||||| || ||||| |||||||  | ||||| ||||||||||    
T  30249497 gctaaatcttaaggggtcaaaattgtagtttttgtacataaaagatcaaaattacaactttttgaaagttacggagggaagagtgcacttt 30249587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 329
Target Start/End: Original strand, 50681595 - 50681701
Alignment:
Q  221 aggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--gggggaa 318  Q
    |||| ||||| |||||||||||||||||    |||||||| |||||||||||| || ||||||   |||||||  |||||||| ||| |||   ||||||    
T  50681595 aggaccaaagatgcaaagaggctaaatc----gggaccaatattgtagtttttatagttagagagccaaaattgcaagtttttgaaaattaagaggggaa 50681690  T
Q  319 aagtgcacttt 329  Q
    |||||||||||    
T  50681691 aagtgcacttt 50681701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 7500581 - 7500459
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||| ||||||| |||||||||| | ||| |||||||||| |||| | || ||||||||||||||||  |||||||| |||    
T  7500581 aaaattgaccaaaaggatcaaagatgcaaaggggctaaatcttagggggccaaaattgtggtttctatacttagaggatcaaaattgcaagtttttgaaa 7500482  T
Q  308 gtt-agggggaaaagtgcacttt 329  Q
    ||| |||||||||||||||||||    
T  7500481 gttaagggggaaaagtgcacttt 7500459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 31659750 - 31659626
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||||||||||| |||||| | |||||||||| | ||| |||||||||||||||||||| |||| || |||||||| ||||||||| |||    
T  31659750 aaaattgaccaaaaggatcaaatttgcaatggggctaaatcttagggggccaaaattgtagtttttgtacttagggggtcaaaattgtaagtttttgaaa 31659651  T
Q  308 gttaggggg---aaaagtgcacttt 329  Q
    |||||||||   |||||||||||||    
T  31659650 gttagggggggtaaaagtgcacttt 31659626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 183 - 328
Target Start/End: Original strand, 14999104 - 14999249
Alignment:
Q  183 catgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttaga 282  Q
    |||| |||||| ||||||||| || ||||||| |  |||||| ||||| ||||||| |||||||||| | ||  |||||||||||||||||||||||||     
T  14999104 catgccacgtaagcattgaccggtcaaaattgacctaaaggaacaaagatgcaaaggggctaaatcttagggcgccaaaattgtagtttttgtatttagg 14999203  T
Q  283 ggatcaaaattataagtttttaaaagttagggggaaaagtgcactt 328  Q
    || ||||||||  ||||||| |||| |  |||||||||||||||||    
T  14999204 gggtcaaaattgcaagttttgaaaattaggggggaaaagtgcactt 14999249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 42886226 - 42886383
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| ||| ||| |||||| | || ||||||| | |||| |||||||| ||||||  |||||||||| | ||| | |||||||||||||||    
T  42886226 cacacgtggcatgccacatagacattgatcggtcaaaattgaccaaaatgatcaaagatgcaaatgggctaaatcttagggggctaaaattgtagttttt 42886325  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttag--ggggaaaagtgcacttt 329  Q
    |||||||| || ||||||||  || ||||| ||||||||  || ||||||||||||||    
T  42886326 gtatttagggggtcaaaattgcaaatttttgaaagttaggaggagaaaagtgcacttt 42886383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 195 - 307
Target Start/End: Complemental strand, 48933805 - 48933695
Alignment:
Q  195 gcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaatta 294  Q
    ||||||| | || |||||||| |||||||||||||||||||  |||| ||||||| |||||| |||||||||||||||||| | ||  |||||||||||     
T  48933805 gcattgagcggtcaaaattggaaaaaaggatcaaagttgca--gaggataaatcttaagggatcaaaattgtagtttttgtttataagggatcaaaattg 48933708  T
Q  295 taagtttttaaaa 307  Q
     ||||||||||||    
T  48933707 caagtttttaaaa 48933695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 21505541 - 21505420
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| ||||||| |||||||||| | |||  |||||||||||||||||||| | | ||  ||||||   || ||||| |||    
T  21505541 aaaattgtccaaaaggaccaaagatgcaaaggggctaaatcttatggggtcaaaattgtagtttttgtatatcgggggccaaaatcgcaactttttgaaa 21505442  T
Q  308 gttagggggaaaagtgcacttt 329  Q
    ||||||||||||||||||||||    
T  21505441 gttagggggaaaagtgcacttt 21505420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 18371551 - 18371428
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||||||||| ||||||   ||||||||| | ||| |||||||||||||||||||| |||  ||  |||||||  |||||||| |||    
T  18371551 aaaattgaccaaaaggatcaaagatgcaaatgtgctaaatcttagggggccaaaattgtagtttttgtacttaaggggccaaaattgcaagtttttgaaa 18371452  T
Q  308 gttag--ggggaaaagtgcacttt 329  Q
    |||||  |||||||||||||||||    
T  18371451 gttaggaggggaaaagtgcacttt 18371428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 7501791 - 7501949
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgacca-gttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttt 272  Q
    |||||||| | || ||||||||||||||  | || ||||||| | ||||||| ||||| ||||||| ||||| |||| ||||| |||||||||| |||||    
T  7501791 cacacgtggcctgccacgtaggcattgaataagtcaaaattgaccaaaaggaccaaagatgcaaaggggctacatcttaaggggccaaaattgttgtttt 7501890  T
Q  273 tgtatttagaggatcaaaattataagtttttaaaagttag--ggggaaaagtgcacttt 329  Q
      || |||| ||  |||||||  |||||||| ||||||||  |||||||||||||||||    
T  7501891 gatacttagggggccaaaattgcaagtttttgaaagttagagggggaaaagtgcacttt 7501949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 18372431 - 18372539
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| | ||||| |||||||||| | ||| |||||||||||||||||||| |||| ||  |||||||  |||||||| |||    
T  18372431 aaaattgaccaaaaggaccaaagatacaaaggggctaaatcttagggggccaaaattgtagtttttgtacttagggggccaaaattgcaagtttttgaaa 18372530  T
Q  308 gttaggggg 316  Q
     ||||||||    
T  18372531 attaggggg 18372539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 22630426 - 22630549
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | ||||||| ||||| | |||||||||| ||||| | ||| | |||||||||||||||||| |||| ||  |||||||  |||||||| |||    
T  22630426 aaaattgaccaaaaggaccaaagatacaaagaggctgaatcttagggggctaaaattgtagtttttgtaattagggggccaaaattgcaagtttttgaaa 22630525  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
    ||||  | ||||||||||||||||    
T  22630526 gttatggagggaaaagtgcacttt 22630549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 208 - 303
Target Start/End: Complemental strand, 22629613 - 22629518
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagttttt 303  Q
    ||||||| | ||||||| ||||| ||||||| |||||||||| | ||| |||||||||||||||||||| ||||  |  |||||||| ||||||||    
T  22629613 aaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgtagtttttgtacttaggaggccaaaattacaagttttt 22629518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 48934922 - 48935000
Alignment:
Q  253 gggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggg--ggaaaagtgcacttt 329  Q
    |||| ||||||| ||||||||||| ||||||| ||||||||| |||||||| ||||||||||  |||||| ||||||||    
T  48934922 gggatcaaaattttagtttttgtacttagagggtcaaaattacaagtttttgaaagttaggggtggaaaaatgcacttt 48935000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 34352726 - 34352828
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | ||||||||||||||||||| || ||||||||| |||| ||| ||||||||||  ||| ||||||| |  || |||||||| |||||| |    
T  34352726 cacacgtggcgtgtcacgtaggcattgaccggtcaaaattggccaaaatgattaaagttgcaataaggttaaatcttagagggccaaaattatagtttat 34352825  T
Q  274 gta 276  Q
    |||    
T  34352826 gta 34352828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 174 - 267
Target Start/End: Complemental strand, 14998140 - 14998048
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgta 267  Q
    |||||||| |||| || |||||||||||||  ||||||||| | ||||||| ||||| ||||||| |||||||||| | ||| |||||||||||    
T  14998140 cacacgtggcatg-catgtaggcattgaccgattaaaattgaccaaaaggaccaaagatgcaaaggggctaaatcttagggggccaaaattgta 14998048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 17781788 - 17781665
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| ||||||||||| | |||||||||| | |||    ||||||| ||||| ||| |||| || ||||||||  |||||||| |||    
T  17781788 aaaattggtcaaaaggaccaaagttgcaatggggctaaatcttaggggggttaaattgtggttttggtacttagggggtcaaaattgcaagtttttgaaa 17781689  T
Q  308 gttag--ggggaaaagtgcacttt 329  Q
    |||||  |||||||||||||||||    
T  17781688 gttagggggggaaaagtgcacttt 17781665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 127462 - 127341
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||  ||||||| |||||||||||   |||||||||| | ||| | ||| |||| ||||| ||| |||| ||| |||||||  |||||||| |||    
T  127462 aaaattggtcaaaaggaccaaagttgcaattgggctaaatcttagggggctaaa-ttgtggttttggtacttaggggaccaaaattgcaagtttttgaaa 127364  T
Q  308 gttag-ggggaaaagtgcacttt 329  Q
    ||||| |||||||||||||||||    
T  127363 gttaggggggaaaagtgcacttt 127341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 3227578 - 3227691
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--gggg 315  Q
    ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| ||  |||||||  |||||||| |||||||  ||||    
T  3227578 aaaaggaccaaagttgcaatggggctaaatcttaggggtgctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaagttagggggg 3227677  T
Q  316 gaaaagtgcacttt 329  Q
    ||||||||||||||    
T  3227678 gaaaagtgcacttt 3227691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 316
Target Start/End: Original strand, 31949786 - 31949884
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggg 316  Q
    ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| |||||||| ||  |||||||  |||||||| ||||||||||||    
T  31949786 aaaaggaccaaagttgcaatggggctaaatcttaggggtgctaaattgtggttttggtatttagggggccaaaattgcaagtttttgaaagttaggggg 31949884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 227 - 320
Target Start/End: Complemental strand, 47369889 - 47369796
Alignment:
Q  227 aaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtattta-gaggatcaaaattataagtttttaaaagttagggggaaaa 320  Q
    |||| ||||||| |||||||||| ||||| |||||||| ||||||||||| ||| |||| | ||||||  |||||||| ||||||||||| ||||    
T  47369889 aaagatgcaaaggggctaaatcttaaggggccaaaattatagtttttgtacttatgaggct-aaaattgcaagtttttgaaagttaggggaaaaa 47369796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 3227224 - 3227112
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta-ggggg 316  Q
    ||||||| ||||||||||| | |||||||||| |||||  | ||||||| ||||| ||| |||| ||  |||||||  |||||||| ||| ||| |||||    
T  3227224 aaaaggaccaaagttgcaatggggctaaatcttaagggggctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaaattagggggg 3227125  T
Q  317 aaaagtgcacttt 329  Q
     ||||||||||||    
T  3227124 gaaagtgcacttt 3227112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 43899524 - 43899452
Alignment:
Q  257 ccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggggaaaagtgcacttt 329  Q
    ||||||||||| ||||| |||||||| ||||||||||  |||||||| ||||||| ||| |||| || |||||    
T  43899524 ccaaaattgtaatttttatatttagaagatcaaaattgcaagtttttgaaagttaagggaaaaaatgtacttt 43899452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 46483552 - 46483604
Alignment:
Q  278 ttagaggatcaaaattataagtttttaaaagtt-agggggaaaagtgcacttt 329  Q
    |||| |||||||||||| ||||||||||||||| | |||||||||||||||||    
T  46483552 ttaggggatcaaaattacaagtttttaaaagttaaaggggaaaagtgcacttt 46483604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 232 - 329
Target Start/End: Original strand, 30439356 - 30439454
Alignment:
Q  232 tgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttaggggga-aaagtgcacttt 329  Q
    ||||||| |||||||||| | ||||| |||||||||||||||| |  |||   ||||||||  ||| ||||| ||||||| ||||| ||||||||||||    
T  30439356 tgcaaaggggctaaatcttaggggactaaaattgtagtttttgaacataggaaatcaaaatcgtaactttttgaaagttaaggggagaaagtgcacttt 30439454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 31660993 - 31661087
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttag 312  Q
    |||||||||||| |||||| |||| ||||| | | ||||| |||||| |||||||||||  || ||| ||||||||  || ||||| ||||||||    
T  31660993 aaaaggatcaaatttgcaatgaggttaaattttaggggactaaaattatagtttttgtacgtaaagggtcaaaattgcaaatttttgaaagttag 31661087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 329
Target Start/End: Complemental strand, 31949439 - 31949326
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagg--gg 315  Q
    ||||||| ||||||||||| | |||||||||| | |||  | ||||||| ||||| ||| |||| ||  |||||||  |||||||| ||| |||||  ||    
T  31949439 aaaaggaccaaagttgcaatggggctaaatcttaggggggctaaattgtggttttggtacttagggggccaaaattgcaagtttttgaaaattagggagg 31949340  T
Q  316 gaaaagtgcacttt 329  Q
    ||||||||||||||    
T  31949339 gaaaagtgcacttt 31949326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 174 - 329
Target Start/End: Complemental strand, 394 - 237
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| ||| ||||| |||||| || |||||||| |||||||||||||  ||||||| |||||| ||| | |||||||||||| ||||||||    
T  394 cacacgtggcatgccacataggcgttgaccggtcaaaattgggaaaaaggatcaaatatgcaaaggggctaattcttaggggaccaaaattatagttttt 295  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    |||  ||| ||| |||||||  || ||||| |||||||  ||||| ||||||||||||    
T  294 gtacataggggaccaaaattgcaactttttgaaagttaagggggggaaagtgcacttt 237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 174 - 311
Target Start/End: Original strand, 918 - 1055
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| |||| |||||| || |||||| || |||||||| |||||||| ||||  ||||||| |||||| |||   ||| |||||||| ||||||||    
T  918 cacacgtggcatgccacgtaagcgttgaccggtcaaaattgggaaaaaggaccaaatatgcaaaggggctaattcttggggggccaaaattatagttttt 1017  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagtta 311  Q
    |||  ||  ||| |||||||  || |||||||||||||    
T  1018 gtacataagggaccaaaattgcaactttttaaaagtta 1055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 178 - 329
Target Start/End: Complemental strand, 17627 - 17474
Alignment:
Q  178 cgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtat 277  Q
    |||| |||| |||||||||||||||| || |||||||| ||||| |||| || |||||||| || ||| |||   ||| ||||||||||||||||||||     
T  17627 cgtggcatgccacgtaggcattgaccggtcaaaattggtaaaaaagatcgaaattgcaaaggggataattcttggggggccaaaattgtagtttttgtac 17528  T
Q  278 ttagaggatcaaaattataagtttttaaaagtta--gggggaaaagtgcacttt 329  Q
    |||| ||  |||||||  ||||||||||||||||  |||| |||||||||||||    
T  17527 ttagggggccaaaattgcaagtttttaaaagttaagggggaaaaagtgcacttt 17474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 188 - 329
Target Start/End: Original strand, 18730 - 18873
Alignment:
Q  188 cacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatc 287  Q
    |||||||||||||||| || ||||||| | |||| ||| |||||||||| | |||||||| | ||||| |||||||| |||||||||||  ||| ||| |    
T  18730 cacgtaggcattgaccggtcaaaattgaccaaaatgattaaagttgcaatggggctaaattttaaggggccaaaattatagtttttgtacctaggggacc 18829  T
Q  288 aaaattataagtttttaaaagttag--ggggaaaagtgcacttt 329  Q
    ||||||  || ||||||||||||||  ||| |||||||||||||    
T  18830 aaaattgcaaatttttaaaagttaggagggaaaaagtgcacttt 18873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 174 - 329
Target Start/End: Original strand, 4670 - 4826
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    ||||| |||||||||||||||||||||| | || ||||||||  |||||||| |||||||||| | |||||||  | |  ||  |||||||||||||| |    
T  4670 cacacatgacatgtcacgtaggcattgatcggtcaaaattggtcaaaaggattaaagttgcaatggggctaaaatttagagggtcaaaattgtagtttct 4769  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttaggg-ggaaaagtgcacttt 329  Q
    |||||||| ||  |||||||  | ||||||||||||||||| || ||||||||||||    
T  4770 gtatttagggggccaaaattgcatgtttttaaaagttagggagggaaagtgcacttt 4826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 174 - 320
Target Start/End: Complemental strand, 3836 - 3690
Alignment:
Q  174 cacacgtgacatgtcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagttttt 273  Q
    |||||||| | || ||||||||||||||||||| ||||||| | |||| ||| |||||||||| | |||||||||| | ||||| |||||| |||||| |    
T  3836 cacacgtggcgtgccacgtaggcattgaccagtcaaaattgaccaaaaagattaaagttgcaatgcggctaaatcttaggggactaaaattatagtttct 3737  T
Q  274 gtatttagaggatcaaaattataagtttttaaaagttagggggaaaa 320  Q
     || | || ||  |||||||  |||||||| ||||||||||| ||||    
T  3736 ttactcagggggccaaaattgcaagtttttgaaagttaggggaaaaa 3690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 187 - 329
Target Start/End: Complemental strand, 23227 - 23085
Alignment:
Q  187 tcacgtaggcattgaccagttaaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggat 286  Q
    |||| ||||| ||||||||| |||||||   |||| ||| ||| |||||| | ||||||| || | |||| ||| ||||| ||||| ||| |||||||      
T  23227 tcacataggctttgaccagtcaaaattgagcaaaatgataaaatttgcaatggggctaaagcttaggggagcaagattgttgttttggtacttagaggga 23128  T
Q  287 caaaattataagtttttaaaagttagggggaaaagtgcacttt 329  Q
    |||||||  |||||||| |||||||||||||||||||||||||    
T  23127 caaaattgcaagtttttgaaagttagggggaaaagtgcacttt 23085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 5422 - 5535
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtta--gggg 315  Q
    |||||||||||| ||| || | |||||||||| |||||  ||||||||||||||||||| |||  || ||||||||  |||||||| ||| |||  ||||    
T  5422 aaaaggatcaaatttgtaatggggctaaatcttaagggggcaaaattgtagtttttgtacttaaggggtcaaaattgcaagtttttgaaaattagggggg 5521  T
Q  316 gaaaagtgcacttt 329  Q
    ||||||||||||||    
T  5522 gaaaagtgcacttt 5535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 2439 - 2561
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagttttta-aa 306  Q
    ||||||| | |||||||| ||| |||||| |  ||||||||  | ||| ||||||| || ||||||||| |||| || ||||||||  ||||||||  ||    
T  2439 aaaattgaccaaaaggatgaaatttgcaatgtagctaaatcgtagggggccaaaatggttgtttttgtacttagggggtcaaaattgcaagttttttgaa 2538  T
Q  307 agttagggggaaaagtgcacttt 329  Q
    |||||||||||||||||||||||    
T  2539 agttagggggaaaagtgcacttt 2561  T

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Target: scaffold0093; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 7062 - 7184
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagttttta-aa 306  Q
    ||||||| | |||||||| ||| |||||| |  ||||||||  | ||| ||||||| || ||||||||| |||| || ||||||||  ||||||||  ||    
T  7062 aaaattgaccaaaaggatgaaatttgcaatgtagctaaatcgtagggggccaaaatggttgtttttgtacttagggggtcaaaattgcaagttttttgaa 7161  T
Q  307 agttagggggaaaagtgcacttt 329  Q
    |||||||||||||||||||||||    
T  7162 agttagggggaaaagtgcacttt 7184  T

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Target: scaffold0049 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 7399 - 7512
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagtt--agggg 315  Q
    ||||||||||||||||||||| |||||||||| | |||  |||||||||||||| ||||  ||| || |||||||  ||| ||||| ||| ||  |||||    
T  7399 aaaaggatcaaagttgcaaaggggctaaatcttagggggtcaaaattgtagtttctgtacatagggggtcaaaatcgtaactttttcaaacttagagggg 7498  T
Q  316 gaaaagtgcacttt 329  Q
    || |||||||||||    
T  7499 gacaagtgcacttt 7512  T

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Target: scaffold0049; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 7893 - 7933
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatc 248  Q
    ||||||||| ||||||||||||||||||||| |||||||||    
T  7893 aaaattggccaaaaggatcaaagttgcaaaggggctaaatc 7933  T

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Target: scaffold0019 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 60217 - 60094
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||| || ||||| ||||||| |||||||||  | |||  |||||||||||||||| ||  ||| || ||||||||  ||||||||||||    
T  60217 aaaattgaccaaaaagaccaaagatgcaaaggggctaaatcatagggggtcaaaattgtagtttttatacatagggggtcaaaattgcaagtttttaaaa 60118  T
Q  308 gtt--agggggaaaagtgcacttt 329  Q
    |||  ||| |||||||||||||||    
T  60117 gttagaggaggaaaagtgcacttt 60094  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 208 - 329
Target Start/End: Original strand, 49407 - 49530
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||||| ||||||| |||||||||||||  ||||||||| | |||  |||||||||||||||| | | ||| ||  |||||||  || ||||| |||    
T  49407 aaaattggccaaaaggaccaaagttgcaaaggagctaaatcttagggggtcaaaattgtagtttttatttatagggggccaaaattgcaacttttttaaa 49506  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
    ||||  ||| ||||||||||||||    
T  49507 gttaaggggagaaaagtgcacttt 49530  T

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Target: scaffold0369 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 243 - 329
Target Start/End: Complemental strand, 13283 - 13197
Alignment:
Q  243 taaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaagttagggggaaaagtgcacttt 329  Q
    ||||||| | ||||| |||||||||||||| |||  |||  | ||||||| | || ||||| |||||||||||||||||||||||||    
T  13283 taaatcttaggggacaaaaattgtagttttcgtacataggaggtcaaaatcacaactttttcaaagttagggggaaaagtgcacttt 13197  T

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Target: scaffold0112 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 240 - 329
Target Start/End: Complemental strand, 37242 - 37152
Alignment:
Q  240 ggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagttttt-aaaagttagggggaaaagtgcacttt 329  Q
    |||||||||  | ||| |||||||||| ||||||||| |||| || ||||||||  || ||||| ||||| ||||||||||||||||||||    
T  37242 ggctaaatcgtagggggccaaaattgttgtttttgtacttagggggtcaaaattgcaaattttttaaaagatagggggaaaagtgcacttt 37152  T

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Target: scaffold0320 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 329
Target Start/End: Complemental strand, 19615 - 19492
Alignment:
Q  208 aaaattggcaaaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgtatttagaggatcaaaattataagtttttaaaa 307  Q
    ||||||| | |||| |||||||| ||||||| || ||||||| | |||| |||||||||||||||| || |||| ||  |||||||  ||| |||| |||    
T  19615 aaaattgaccaaaatgatcaaagatgcaaaggggttaaatcttaggggatcaaaattgtagtttttatacttagggggccaaaattgcaaggttttgaaa 19516  T
Q  308 gtta--gggggaaaagtgcacttt 329  Q
     |||  ||||||||| ||||||||    
T  19515 attaaggggggaaaaatgcacttt 19492  T

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Target: scaffold0586 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 6460 - 6402
Alignment:
Q  218 aaaaggatcaaagttgcaaagaggctaaatctcaagggaccaaaattgtagtttttgta 276  Q
    ||||||| ||||| |||||| ||||||||||| | |||  |||||||||||||||||||    
T  6460 aaaaggaccaaagatgcaaaaaggctaaatcttagggggtcaaaattgtagtttttgta 6402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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