View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4673-Insertion-5 (Length: 571)

Name: NF4673-Insertion-5
Description: NF4673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4673-Insertion-5
NF4673-Insertion-5
[»] chr8 (9 HSPs)
chr8 (6-571)||(40805168-40805734)
chr8 (10-301)||(40811991-40812282)
chr8 (10-308)||(40825716-40826014)
chr8 (10-297)||(40817150-40817437)
chr8 (10-297)||(40806894-40807181)
chr8 (422-571)||(40826098-40826247)
chr8 (425-571)||(40812281-40812427)
chr8 (425-571)||(40817440-40817586)
chr8 (425-571)||(40807184-40807330)
[»] scaffold0415 (2 HSPs)
scaffold0415 (10-297)||(14927-15214)
scaffold0415 (425-571)||(14778-14924)
[»] scaffold0559 (4 HSPs)
scaffold0559 (10-288)||(7457-7737)
scaffold0559 (426-571)||(8910-9057)
scaffold0559 (452-571)||(3698-3817)
scaffold0559 (426-571)||(7296-7442)


Alignment Details
Target: chr8 (Bit Score: 503; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 6 - 571
Target Start/End: Original strand, 40805168 - 40805734
Alignment:
Q  6 caagtccaacgttagaacatcattacttagaacaaccccggatgaagactgtttttgctttgcatctgcaatgatttgtccatctttgtttactatccga 105  Q
    ||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40805168 caagtccaacgttagaacatcattacttagaacaacccctgacgatgactgtttttgctttgcatctgcaatgatttgtccatctttgtttactatccga 40805267  T
Q  106 aaagcaaatgattttcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40805268 aaagcaaatgattttcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatc 40805367  T
Q  206 ttttgacttgaaaccatggttgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataatctctgcaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40805368 ttttgacttgaaaccatggttgctcctcctggcttctaatattagagttgctgcaatatttgtgtccttcccaacatccaaaagctagtaatctctgcaa 40805467  T
Q  306 aatacagataaaaattaattataaataagttaaattcaacattaaattattagtagatgtcttggtgagagatattattgcttaactagtagtgtggcat 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40805468 aatacagataaaaattaattataaataagttaaattcaacattaaattattagtagatgtcttggtgagagatattattgcttaactagtagagtggcat 40805567  T
Q  406 gcat-atatggtgtagatacctttttgatggtgcagagaacgtttccttttagattcatcagatttacttctcttccaccctttctgtcatagttttcaa 504  Q
      ||  | |  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40805568 atatggtgtactgtagatacctttttgatggtgcagagaacgtttccttttagattcatgagatttacttctcttccaccctttctgtcatagttttcaa 40805667  T
Q  505 ctcggtaaacgatgtcaccatttgaatcataggcagtacaaccgttggagtgaagaacaagtgattt 571  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40805668 ctcggtaaacgatgtcaccatttgaatcataggcagtacaaccattggagtgaagaacaagtgattt 40805734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 10 - 301
Target Start/End: Original strand, 40811991 - 40812282
Alignment:
Q  10 tccaacgttagaacatcattacttagaacaaccccggatgaagactgtttttgctttgcatctgcaatgatttgtccatctttgtttactatccgaaaag 109  Q
    ||||||||||||||||| ||||| ||||||||||| || || ||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||    
T  40811991 tccaacgttagaacatcgttactcagaacaacccctgaggatgactgtttttgctttgcctcagcaatgatttctccatctttgtttactatccgaaaag 40812090  T
Q  110 caaatgattttcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatctttt 209  Q
    ||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| |  | || |||||||||||||||    
T  40812091 caaatgattttcctatactgattctttctatacacaaattttggctccccactttaatctggcaagctattttcccagagaaaaccttatgacatctttt 40812190  T
Q  210 gacttgaaaccatggttgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataatctct 301  Q
     ||||||||||||||||| ||||  |||||||||| | |||||||| ||||||||||||| |||||||||||||||||| ||| ||||||||    
T  40812191 aacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttcccaacatccaaaaactagtaatctct 40812282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 308
Target Start/End: Original strand, 40825716 - 40826014
Alignment:
Q  10 tccaacgttagaacatcattacttagaacaaccccggatgaagactgtttttgctttgcatctgcaatgatttgtccatctttgtttactatccgaaaag 109  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||    
T  40825716 tccaaagttagaacatcattactcagaacaacccctgatgaagactgtttttgctttgcctctgcaatgatttctccatttttgtttactatcctaaaag 40825815  T
Q  110 caaatgattttcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatctttt 209  Q
    |||||||||||||||| ||||||||||||||||| | ||||||| | |||||||||||||||||||||||||||||||  |||| |||||||||||||||    
T  40825816 caaatgattttcctatgctgattctttctatgcacatattttgggatcccactttaatctggcaagctattttccctgatataaccttatgacatctttt 40825915  T
Q  210 gacttgaaaccatggttgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataatctctgcaaaat 308  Q
     ||||  ||||||||||||||||| || ||||| | | | |||||| ||||||||||||| |||||||| ||||||||||||| |||||||||||||||    
T  40825916 aactttgaaccatggttgctcctcttgccttcttaaacttgaattgttgcaatatttgtggccttcccagcatccaaaagctagtaatctctgcaaaat 40826014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 40817150 - 40817437
Alignment:
Q  10 tccaacgttagaacatcattacttagaacaaccccggatgaagactgtttttgctttgcatctgcaatgatttgtccatctttgtttactatccgaaaag 109  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||    
T  40817150 tccaaagttagaacatcattactcagaacaaccccggatgaagactgtttttgctttgcctctgcaatgatttctccatttttgtttactatcctaaaag 40817249  T
Q  110 caaatgattttcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatctttt 209  Q
    |||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||| ||||||| ||| ||||| |||||||||  |||||||||    
T  40817250 caaatgattttcctgtactgattctttctatgcacaaattttgggaccctactttaatctgacaagctacttttcctgtgataatcttagtacatctttt 40817349  T
Q  210 gacttgaaaccatggttgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataat 297  Q
     ||||| ||||||||||| ||||| ||||||| || |||||||||| | ||||||||||  |||||||||||||||||||||| ||||    
T  40817350 aacttggaaccatggttgttcctcttggcttccaaaattagaattgttacaatatttgtagccttcccaacatccaaaagctagtaat 40817437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 40806894 - 40807181
Alignment:
Q  10 tccaacgttagaacatcattacttagaacaaccccggatgaagactgtttttgctttgcatctgcaatgatttgtccatctttgtttactatccgaaaag 109  Q
    ||||| ||||||| ||||||||| ||||||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||||||||||  |||| |||||    
T  40806894 tccaaagttagaatatcattactcagaacaaccccggatgacgacagtttttgctttgcctctgcaatgatttctccatctttgtttataatcctaaaag 40806993  T
Q  110 caaatgattttcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatctttt 209  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |  | || |||||||||||||||    
T  40806994 caaatgattttcctatactgattctttctatacacaaattttggcaccccactttaatctggcaagctattttcccagagaaaaccttatgacatctttt 40807093  T
Q  210 gacttgaaaccatggttgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataat 297  Q
     ||||  ||||||||||||||||| |||||| | | | | |||||  ||||||||||||  |||||||||||||||||||||| ||||    
T  40807094 aactttgaaccatggttgctcctcttggctttttaaacttgaattattgcaatatttgtagccttcccaacatccaaaagctagtaat 40807181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 422 - 571
Target Start/End: Original strand, 40826098 - 40826247
Alignment:
Q  422 tacctttttgatggtgcagagaacgtttccttttagattcatcagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgtca 521  Q
    ||||||||| || || |||||||| ||||||||||||||||| ||| | ||||| |||||||||||||||||||||||||||||||| |||||||||  |    
T  40826098 taccttttttattgtacagagaacatttccttttagattcatgagagtaacttcccttccaccctttctgtcatagttttcaactcgataaacgatgcta 40826197  T
Q  522 ccatttgaatcataggcagtacaaccgttggagtgaagaacaagtgattt 571  Q
    ||||||||||||||  |||| ||||| || ||||| ||||||||||||||    
T  40826198 ccatttgaatcataaacagtgcaaccattagagtgtagaacaagtgattt 40826247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 425 - 571
Target Start/End: Original strand, 40812281 - 40812427
Alignment:
Q  425 ctttttgatggtgcagagaacgtttccttttagattcatcagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgtcacca 524  Q
    ||||||||||||||||||||| || |||| ||||| ||| ||||| |||||||||||||| ||  |||||||||| |||||||| |||||||||| |||     
T  40812281 ctttttgatggtgcagagaacattgccttgtagatccatgagattcacttctcttccacctttcttgtcatagttatcaactcgataaacgatgttaccc 40812380  T
Q  525 tttgaatcataggcagtacaaccgttggagtgaagaacaagtgattt 571  Q
    |||||||||||| |||| ||||| |||||||| ||||||||||||||    
T  40812381 tttgaatcatagacagtgcaaccattggagtggagaacaagtgattt 40812427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 425 - 571
Target Start/End: Original strand, 40817440 - 40817586
Alignment:
Q  425 ctttttgatggtgcagagaacgtttccttttagattcatcagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgtcacca 524  Q
    ||||||||||||||| ||||  || |||| ||||| ||| ||||| |||||||||| ||| ||| |||||||||| |||||||| |||||||||| |||     
T  40817440 ctttttgatggtgcaaagaagattcccttgtagatccattagattcacttctcttctaccttttttgtcatagttatcaactcgataaacgatgttaccg 40817539  T
Q  525 tttgaatcataggcagtacaaccgttggagtgaagaacaagtgattt 571  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||    
T  40817540 tttgaatcatagacagtgcaaccattggagtgaagaacaagtgattt 40817586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 425 - 571
Target Start/End: Original strand, 40807184 - 40807330
Alignment:
Q  425 ctttttgatggtgcagagaacgtttccttttagattcatcagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgtcacca 524  Q
    ||||||||||||||||||||  || |||| | ||| ||| ||||| |||||||||  ||| ||| |||| ||||| ||||| || |||||||||| |||     
T  40807184 ctttttgatggtgcagagaagattgccttgttgatccatgagattgacttctcttttaccttttttgtcgtagttatcaacacgataaacgatgttaccc 40807283  T
Q  525 tttgaatcataggcagtacaaccgttggagtgaagaacaagtgattt 571  Q
    |||||||||||| |||| ||||| |||||||| ||||||||||||||    
T  40807284 tttgaatcatagacagtgcaaccattggagtgtagaacaagtgattt 40807330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0415 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: scaffold0415
Description:

Target: scaffold0415; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 10 - 297
Target Start/End: Complemental strand, 15214 - 14927
Alignment:
Q  10 tccaacgttagaacatcattacttagaacaaccccggatgaagactgtttttgctttgcatctgcaatgatttgtccatctttgtttactatccgaaaag 109  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||    
T  15214 tccaaagttagaacatcattactcagaacaaccccggatgaagactgtttttgctttgcctctgcaatgatttctccatttttgtttactatcctaaaag 15115  T
Q  110 caaatgattttcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatctttt 209  Q
    |||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||| ||||||| ||| ||||| |||||||||  |||||||||    
T  15114 caaatgattttcctgtactgattctttctatgcacaaattttgggaccctactttaatctgacaagctacttttcctgtgataatcttagtacatctttt 15015  T
Q  210 gacttgaaaccatggttgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaagctaataat 297  Q
     ||||| ||||||||||| ||||| ||||||| || |||||||||| | ||||||||||  |||||||||||||||||||||| ||||    
T  15014 aacttggaaccatggttgttcctcttggcttccaaaattagaattgttacaatatttgtagccttcccaacatccaaaagctagtaat 14927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0415; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 425 - 571
Target Start/End: Complemental strand, 14924 - 14778
Alignment:
Q  425 ctttttgatggtgcagagaacgtttccttttagattcatcagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgtcacca 524  Q
    ||||||||||||||| ||||  || |||| ||||| ||| ||||| |||||||||| ||| ||| |||||||||| |||||||| |||||||||| |||     
T  14924 ctttttgatggtgcaaagaagattcccttgtagatccattagattcacttctcttctaccttttttgtcatagttatcaactcgataaacgatgttaccg 14825  T
Q  525 tttgaatcataggcagtacaaccgttggagtgaagaacaagtgattt 571  Q
    |||||||||||| |||| ||||| |||||||||||||||||||||||    
T  14824 tttgaatcatagacagtgcaaccattggagtgaagaacaagtgattt 14778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559 (Bit Score: 145; Significance: 5e-76; HSPs: 4)
Name: scaffold0559
Description:

Target: scaffold0559; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 7737 - 7457
Alignment:
Q  10 tccaacgttagaacatcattacttagaacaaccccggatgaagactgttttt-gctttgcatctgcaatgatttgtccatctttgtttactatccgaaaa 108  Q
    ||||| ||||||| ||||||||| ||||||||||||||||| ||| |||||| ||||||| ||||||||||||| ||||||||||||||  |||| ||||    
T  7737 tccaaagttagaatatcattactcagaacaaccccggatgacgacagttttttgctttgcctctgcaatgatttctccatctttgtttataatcctaaaa 7638  T
Q  109 -gcaaatgattttcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatctt 207  Q
     |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |  | || |||||||||||||    
T  7637 agcaaatgattttcctatactgattctttctatacacaaattttggcaccccactttaatctggcaagctattttcccagagaaaaccttatgacatctt 7538  T
Q  208 ttgacttgaaaccatggttgctcctcctggcttctaatattagaattgctgcaatatttgtgtccttcccaacatccaaaa 288  Q
    || ||||  ||||||||||||||||| |||||| | | | | |||||  ||||||||||||  ||||||||||||||||||    
T  7537 ttaactttgaaccatggttgctcctcttggctttttaaacttgaattattgcaatatttgtagccttcccaacatccaaaa 7457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 426 - 571
Target Start/End: Complemental strand, 9057 - 8910
Alignment:
Q  426 tttttgatggtgcagagaacgtttcctttt-agattcatcagatttacttctcttccaccctttctgtcatagtttt-caactcggtaaacgatgtcacc 523  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9057 tttttgatggtgcagagaacgtttcctttttagattcatgagatttacttctcttccaccctttctgtcatagtttttcaactcggtaaacgatgtcacc 8958  T
Q  524 atttgaatcataggcagtacaaccgttggagtgaagaacaagtgattt 571  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  8957 atttgaatcataggcagtacaaccattggagtgaagaacaagtgattt 8910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 452 - 571
Target Start/End: Original strand, 3698 - 3817
Alignment:
Q  452 ttttagattcatcagatttacttctcttccaccctttctgtcatagttttcaactcggtaaacgatgtcaccatttgaatcataggcagtacaaccgttg 551  Q
    |||||||||||| ||| | ||||| |||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||  |||| ||||| ||     
T  3698 ttttagattcatgagagtaacttcccttccaccctttctgtcatagttttcaactcgataaacgatgctaccatttgaatcataaacagtgcaaccatta 3797  T
Q  552 gagtgaagaacaagtgattt 571  Q
    ||||| ||||||||||||||    
T  3798 gagtgtagaacaagtgattt 3817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 426 - 571
Target Start/End: Complemental strand, 7442 - 7296
Alignment:
Q  426 tttttgatggtgcagagaacgtttccttttagattcatcagatttacttctcttccaccctttct-gtcatagttttcaactcggtaaacgatgtcacca 524  Q
    |||||||||||||||||||  || |||| | ||| ||| ||||| |||||||||  ||| ||| | ||| ||||| ||||| || |||||||||| |||     
T  7442 tttttgatggtgcagagaagattgccttgttgatccatgagattgacttctcttttacctttttttgtcgtagttatcaacacgataaacgatgttaccc 7343  T
Q  525 tttgaatcataggcagtacaaccgttggagtgaagaacaagtgattt 571  Q
    |||||||||||| |||| ||||| |||||||| ||||||||||||||    
T  7342 tttgaatcatagacagtgcaaccattggagtgtagaacaagtgattt 7296  T

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