View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4673_high_6 (Length: 238)
Name: NF4673_high_6
Description: NF4673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4673_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33721462 - 33721242
Alignment:
| Q |
1 |
cgtggcagagcttgtaaatgctatgcaggcccaagaacaaagaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33721462 |
cgtggcagagcttgtaaatgctatgcaggcccaagaacaaagaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaac |
33721363 |
T |
|
| Q |
101 |
tacaatggtggaaggaatgagaaaagaaaccagagaagcaatacaagtctcttttcaccctgtccatactgcnnnnnnnntaaccatccaccaaacagat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
33721362 |
tacaatggtggaaggaatgagaaaagaaaccagagaagcaatacaagtctcttttcaccctgtccatactgcaaaaaaaataaccatccacaaaacagat |
33721263 |
T |
|
| Q |
201 |
attggtggagaccaaaagtaa |
221 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
33721262 |
attggtggagaccaaacgtaa |
33721242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 214
Target Start/End: Complemental strand, 28698669 - 28698461
Alignment:
| Q |
7 |
agagcttgtaaatgctatgcaggcccaagaacaaagaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaactacaat |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28698669 |
agagcttgtaaatgctatgcaggcccaagaacaaagaagaatgataaggtctgaaggttcagtggaaggagcattacaagctaaattaaagaactacaat |
28698570 |
T |
|
| Q |
107 |
ggtggaaggaatgagaaaagaaaccagagaagcaatacaagtctcttttcaccctgtccatactgc-nnnnnnnntaaccatccaccaaacagatattgg |
205 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |||| |
|
|
| T |
28698569 |
ggtggaaggaatgagaaaagaaaccagagcagcaatacaagtctcttttcaccttgtccattctgcaaaaaaaaataaccatccaccaaacagatgttgg |
28698470 |
T |
|
| Q |
206 |
tggagacca |
214 |
Q |
| |
|
||||||||| |
|
|
| T |
28698469 |
tggagacca |
28698461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 626912 - 627128
Alignment:
| Q |
1 |
cgtggcagagcttgtaaatgctatgcaggcccaagaacaaagaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaagaac |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
626912 |
cgtgggagagcttgtaaatgctatgcagggccaagaacaaagaagaatgataaggtctgaaggttcagtggaaggagcattacaagctaaattaaagaac |
627011 |
T |
|
| Q |
101 |
tacaatggtggaaggaatgagaaaagaaaccagagaagcaatacaagtctcttttcaccctgtccatactgc---nnnnnnnntaaccatccaccaaaca |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
627012 |
tacaatggtggaaggaatgagaaaagaaaccagagcagcaatataagtctcttttcaccctatccatactgcaaaaaaaaaaataaccatccaccaaaca |
627111 |
T |
|
| Q |
198 |
gatattggtggagacca |
214 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
627112 |
gatgttggtggagacca |
627128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 29868388 - 29868483
Alignment:
| Q |
1 |
cgtggcagagcttgtaaatgctatgcaggcccaagaacaaagaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa |
96 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
29868388 |
cgtggcggagcttgtaaatgctatgcaggcccaagaacaaagaagaatgataaggtctgaaggatcagtggaaggagcattacaagctaaattaaa |
29868483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 21027142 - 21027047
Alignment:
| Q |
1 |
cgtggcagagcttgtaaatgctatgcaggcccaagaacaaagaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa |
96 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21027142 |
cgtggcggagcttgtaaatgctatgcaggcccaagaacaaagaagaatgataaggtctgaaggttcagtggaaggagcattacaagctaaattaaa |
21027047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 19965854 - 19965949
Alignment:
| Q |
1 |
cgtggcagagcttgtaaatgctatgcaggcccaagaacaaagaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa |
96 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
19965854 |
cgtggcggagcttgtaaatgctatgcagacccaagaacaaagaagaatgataaggtctgaaggttcagtggaaggagcattacaagctaaattaaa |
19965949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 20785961 - 20785866
Alignment:
| Q |
1 |
cgtggcagagcttgtaaatgctatgcaggcccaagaacaaagaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa |
96 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20785961 |
cgtggcggagcttgtaaatgctatgcaggcccaagaacaaagaagaatgataaggtctgaaggttcagtggaaggagcattacaagctaaattaaa |
20785866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 29470100 - 29470195
Alignment:
| Q |
1 |
cgtggcagagcttgtaaatgctatgcaggcccaagaacaaagaagaatgataaggtctgaaggtttagtggaaggagcattacaagctaaattaaa |
96 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
29470100 |
cgtggcggagcttgtaaatgctatgcaggcccaagaacaaagaagaacgataaggtctgaaggttcagtggaaggagcattgcaagctaaattaaa |
29470195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University