View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4673_low_1 (Length: 313)
Name: NF4673_low_1
Description: NF4673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4673_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 11437975 - 11437683
Alignment:
| Q |
18 |
gatggttcttcctttagaacttatcttgatgcttctgatgaagcttcttccttcattgaaatggatccaagaatgccatcttcaagaagattctttataa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11437975 |
gatggttcttcctttagaacttatcttgatgcttctgatgaagcttcttccttcattgaaatggatccaagaatgccatcttcaagaagattctttataa |
11437876 |
T |
|
| Q |
118 |
actcacaagatttcaaatttgattttccaaccttacaagaatcccctctcactactcttgttgatgcagatcaactcttttccaatggttacttaatgcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11437875 |
actcacaagatttcaaatttgattttccaaccttacaagaatcccctctcaccactcttgttgatgcagatcaactcttttccaatggttacttaatgcc |
11437776 |
T |
|
| Q |
218 |
attatttgttgaatcattgaatatagaaccatatgaatatgattcatcaaattctaattcaaattcagattcaaattcaacctttgcttcttc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11437775 |
attatttgttgaatcattgaatatagaaccatatgaatatgattcatcaaattctaattcaaattcagattcaaattcaaccttagcttcttc |
11437683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 53 - 291
Target Start/End: Complemental strand, 11430593 - 11430355
Alignment:
| Q |
53 |
tgatgaagcttcttccttcattgaaatggatccaagaatgccatcttcaagaagattctttataaactcacaagatttcaaatttgattttccaacctta |
152 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||| ||||||||||||||||| | | |
|
|
| T |
11430593 |
tgatgaaggttcttccttcattgaaatggatccaagaatgccaccttctagaagatttttcataaactcacaagatttaaaatttgattttccaacttca |
11430494 |
T |
|
| Q |
153 |
caagaatcccctctcactactcttgttgatgcagatcaactcttttccaatggttacttaatgccattatttgttgaatcattgaatatagaaccatatg |
252 |
Q |
| |
|
||| | ||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| || | |||||||||||||||||||| |||||||||| |
|
|
| T |
11430493 |
caacattcccccctcacaactcttgttgatgcagatcaactcttttcaaatggttacttaatacccctttttgttgaatcattgaatattgaaccatatg |
11430394 |
T |
|
| Q |
253 |
aatatgattcatcaaattctaattcaaattcagattcaa |
291 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| |||||| |
|
|
| T |
11430393 |
aatatgattcatttaattcaaattcaaattcaaattcaa |
11430355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 27 - 279
Target Start/End: Complemental strand, 11423444 - 11423198
Alignment:
| Q |
27 |
tcctttagaacttatcttgatgcttctgatgaagcttcttccttcattgaaatggatccaagaatgccatcttcaagaagattctttataaactcacaag |
126 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| |||||| ||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
11423444 |
tcctttagaacttctcttgatgcttatgatgaagcttcttctttcattgaaatgaatccaaaaatgccaccttctaaaagattctttataaactcacaag |
11423345 |
T |
|
| Q |
127 |
atttcaaatttgattttccaaccttacaagaatcccctctcactactcttgttgatgcagatcaactcttttccaatggttacttaatgccattatttgt |
226 |
Q |
| |
|
|||| |||||| |||||||||||| || | || ||||| | ||||||||||||||| ||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
11423344 |
attttaaatttcattttccaacctcac---attcttctctc---aatcttgttgatgcagaccaactcttttccaatggttactttatgccatattttgt |
11423251 |
T |
|
| Q |
227 |
tgaatcattgaatatagaaccatatgaatatgattcatcaaattctaattcaa |
279 |
Q |
| |
|
| |||||||||| | |||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
11423250 |
ttaatcattgaaaactgaaccatatgaatatgattcatcagattcaaattcaa |
11423198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 64 - 238
Target Start/End: Original strand, 44907239 - 44907410
Alignment:
| Q |
64 |
cttccttcattgaaatggatccaagaatgccatcttcaagaagattctttataaactcacaagatt---tcaaatttgattttccaaccttacaagaatc |
160 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||| | ||||||||| || || ||||| |||| |||||||||||||||||||| || |||| |
|
|
| T |
44907239 |
cttccttcattgagatggatccaagaatgccaccttctaaaagattcttcatgaattcacatgattccaacaaatttgattttccaacctcac---aatc |
44907335 |
T |
|
| Q |
161 |
ccctctcactactcttgttgatgcagatcaactcttttccaatggttacttaatgccattatttgttgaatcattgaa |
238 |
Q |
| |
|
|||||| |||||||||| |||||||| |||||||||| |||||||| | ||||| || |||||||||| ||||| |
|
|
| T |
44907336 |
ccctct---tactcttgttcatgcagatgaactcttttctgatggttaccttatgccttttgttgttgaatctttgaa |
44907410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University