View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4673_low_4 (Length: 245)

Name: NF4673_low_4
Description: NF4673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4673_low_4
NF4673_low_4
[»] chr3 (10 HSPs)
chr3 (1-234)||(48394267-48394488)
chr3 (34-108)||(39623991-39624065)
chr3 (34-107)||(41665430-41665503)
chr3 (35-107)||(52044101-52044173)
chr3 (34-107)||(31604696-31604769)
chr3 (33-107)||(27481707-27481781)
chr3 (34-107)||(47667107-47667180)
chr3 (38-106)||(39918624-39918692)
chr3 (29-106)||(48402436-48402513)
chr3 (50-102)||(48413988-48414040)
[»] chr7 (7 HSPs)
chr7 (22-111)||(39796747-39796836)
chr7 (34-108)||(23260675-23260749)
chr7 (35-106)||(38538910-38538981)
chr7 (34-106)||(28040454-28040526)
chr7 (34-106)||(33171123-33171195)
chr7 (34-106)||(44206097-44206169)
chr7 (34-107)||(31516560-31516633)
[»] chr1 (9 HSPs)
chr1 (29-106)||(5757793-5757870)
chr1 (35-107)||(3820305-3820377)
chr1 (34-107)||(5031737-5031810)
chr1 (34-107)||(17983259-17983332)
chr1 (34-106)||(20607549-20607621)
chr1 (29-106)||(6073242-6073319)
chr1 (35-107)||(41985251-41985323)
chr1 (38-106)||(20610824-20610892)
chr1 (35-107)||(41987968-41988040)
[»] chr8 (6 HSPs)
chr8 (34-108)||(9944021-9944095)
chr8 (34-107)||(18364532-18364605)
chr8 (34-107)||(35929245-35929318)
chr8 (35-107)||(27547174-27547246)
chr8 (34-107)||(43731583-43731656)
chr8 (34-106)||(43748330-43748402)
[»] chr5 (4 HSPs)
chr5 (34-107)||(8880743-8880816)
chr5 (34-106)||(32684983-32685055)
chr5 (34-106)||(20190346-20190418)
chr5 (34-107)||(20200373-20200446)
[»] chr2 (4 HSPs)
chr2 (34-111)||(36047048-36047125)
chr2 (34-111)||(36048279-36048356)
chr2 (34-107)||(27282662-27282735)
chr2 (33-106)||(44206818-44206891)
[»] chr4 (1 HSPs)
chr4 (24-106)||(24267487-24267569)
[»] scaffold0012 (1 HSPs)
scaffold0012 (38-96)||(184936-184994)
[»] chr6 (1 HSPs)
chr6 (52-84)||(30899737-30899769)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 48394488 - 48394267
Alignment:
Q  1 taaataatatctgagagtttgtattaataaatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggca 100  Q
    ||||||||||||||||||||  ||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48394488 taaataatatctgagagtttaaattatcaaatgagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggca 48394389  T
Q  101 acggcg---tatttaagttcgctctcttttttggtgttttgatgttttcccttaagcgcgtttaccatagttgttttctatcctttctgactctcgttat 197  Q
    ||||||   | |||| ||||||||||||||||||        |||||||||||||       ||||||||||||||||| ||||||||||||||||||||    
T  48394388 acggcgttttttttatgttcgctctcttttttgg--------tgttttcccttaa-------taccatagttgttttctttcctttctgactctcgttat 48394304  T
Q  198 tttatttgatttgacaaaagaatcaccaatccttcat 234  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  48394303 tttattttatttgacaaaagaatcgccaatccttcat 48394267  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 39624065 - 39623991
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgta 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39624065 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgta 39623991  T

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Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 41665503 - 41665430
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41665503 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 41665430  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 52044101 - 52044173
Alignment:
Q  35 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52044101 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 52044173  T

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Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 31604696 - 31604769
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31604696 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 31604769  T

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Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 27481781 - 27481707
Alignment:
Q  33 cagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  27481781 cagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgatccgggttcgatccccggcagcggcgt 27481707  T

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Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 47667180 - 47667107
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  47667180 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcaagtgacccgggttcgatccccggcaacggcgt 47667107  T

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Target: chr3; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 39918692 - 39918624
Alignment:
Q  38 gttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 106  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  39918692 gttgtagtatagtggtaagtattcccgcctgtcacacgggtgacccgggttcgatccccggcaacggcg 39918624  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 48402513 - 48402436
Alignment:
Q  29 aaatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 106  Q
    |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||||| ||||||||||    
T  48402513 aaataagttgttgtagtatagtggtaagtattcccgtctgtcacgcgggtgacctgagtttgatccctggcaacggcg 48402436  T

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Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 48414040 - 48413988
Alignment:
Q  50 tggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaac 102  Q
    |||||||||||||||| ||||||||||||||| |||||| |||||||| ||||    
T  48414040 tggtaagtattcccgcttgtcacgcgggtgactcgggtttgatccccgacaac 48413988  T

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Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 39796836 - 39796747
Alignment:
Q  22 tattaataaatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgtattt 111  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39796836 tattaacacatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgtattt 39796747  T

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Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 23260675 - 23260749
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgta 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23260675 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgta 23260749  T

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Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 38538910 - 38538981
Alignment:
Q  35 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38538910 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 38538981  T

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Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 28040526 - 28040454
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28040526 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 28040454  T

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Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 33171123 - 33171195
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33171123 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 33171195  T

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Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 44206097 - 44206169
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44206097 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 44206169  T

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Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 31516560 - 31516633
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  31516560 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatcctcggcagcggcgt 31516633  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 5757793 - 5757870
Alignment:
Q  29 aaatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5757793 aaatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 5757870  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 3820377 - 3820305
Alignment:
Q  35 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3820377 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 3820305  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 5031737 - 5031810
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5031737 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 5031810  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 17983259 - 17983332
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17983259 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 17983332  T

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Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 20607549 - 20607621
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20607549 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 20607621  T

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Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 6073319 - 6073242
Alignment:
Q  29 aaatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 106  Q
    |||| ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6073319 aaattagttgttgtagtatagtggtaagtattcccacctgtcacgcgggtgacccgggttcgatccccggcaacggcg 6073242  T

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Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 41985251 - 41985323
Alignment:
Q  35 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  41985251 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcaatccccggcagcggcgt 41985323  T

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Target: chr1; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 20610824 - 20610892
Alignment:
Q  38 gttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 106  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||    
T  20610824 gttgtagtatagtggtaagtattcccgcttgtcacccgggtgacccgggttcgatccccggcagcggcg 20610892  T

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Target: chr1; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 41987968 - 41988040
Alignment:
Q  35 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||| ||||||    
T  41987968 gtcgttgtagtatagtggtaagtattcccgcctgtcacccgggtgacccaggtttgatccccggcagcggcgt 41988040  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 9944095 - 9944021
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgta 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9944095 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgta 9944021  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 18364532 - 18364605
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18364532 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 18364605  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 35929245 - 35929318
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35929245 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 35929318  T

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Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 107
Target Start/End: Original strand, 27547174 - 27547246
Alignment:
Q  35 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27547174 gtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 27547246  T

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Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 43731656 - 43731583
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  43731656 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 43731583  T

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Target: chr8; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 43748402 - 43748330
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43748402 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 43748330  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 8880743 - 8880816
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8880743 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 8880816  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 32684983 - 32685055
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32684983 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcg 32685055  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 20190418 - 20190346
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 106  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  20190418 agtcgttgtagtatagtggtaagtattcccgcctgtcacgtgggtgacccgggttcgatccccggcagcggcg 20190346  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 20200446 - 20200373
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| || ||||||    
T  20200446 agtcgttgtagtatagtggtaagtattcctgcctgtcatgcgggtgacccgggtttgatccccgacagcggcgt 20200373  T

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Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 36047048 - 36047125
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgtattt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36047048 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtattt 36047125  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 36048279 - 36048356
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgtattt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36048279 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgtattt 36048356  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 107
Target Start/End: Complemental strand, 27282735 - 27282662
Alignment:
Q  34 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcgt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27282735 agtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcagcggcgt 27282662  T

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Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 44206818 - 44206891
Alignment:
Q  33 cagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  44206818 cagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccggattcgatccccggcagcggcg 44206891  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 24267569 - 24267487
Alignment:
Q  24 ttaataaatcagtcgttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatccccggcaacggcg 106  Q
    |||| |||| ||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||    
T  24267569 ttaacaaatgagtcgttgtagtatagtggtaagtatttccgcctgtcacgcggacgacccgggttcgatccccggcaacggcg 24267487  T

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Target: scaffold0012 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 184936 - 184994
Alignment:
Q  38 gttgtagtatagtggtaagtattcccgcctgtcacgcgggtgacccgggttcgatcccc 96  Q
    ||||||||||||||||||||||| ||  |||||| |||||||| |||||||| ||||||    
T  184936 gttgtagtatagtggtaagtatttccatctgtcatgcgggtgatccgggttcaatcccc 184994  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 30899737 - 30899769
Alignment:
Q  52 gtaagtattcccgcctgtcacgcgggtgacccg 84  Q
    |||||||||||||||||||||||||||||||||    
T  30899737 gtaagtattcccgcctgtcacgcgggtgacccg 30899769  T

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