View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4673_low_5 (Length: 239)
Name: NF4673_low_5
Description: NF4673
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4673_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 48394626 - 48394844
Alignment:
| Q |
1 |
acttagcaatggccttgtcctccaccaccaccactacaatttgcattcaaagtaacaacaacattccaagcaaactaggattctcaactaataacgttgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
48394626 |
acttagcaatggccttgtcctccaccaccaccactacaatttgcattcaaagtaaca---acattccaagcaaactaggattctcagctaataacgttgt |
48394722 |
T |
|
| Q |
101 |
tttttctgtgaaactaccgcgtaaactatgtatcagaagctctagtgaaaactctgcaggttcaacagaggttgagtcagagagttccattgaacttcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48394723 |
tttttctgtgaaactaccgcgtaaactatgtatcagaagctctagtgaaaactctgcaggttcaacagaggttgagtcagagagttccattgaacttcca |
48394822 |
T |
|
| Q |
201 |
aaagaatcatcttctttaattt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
48394823 |
aaagaatcatcttctttaattt |
48394844 |
T |
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