View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4674_high_2 (Length: 349)
Name: NF4674_high_2
Description: NF4674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4674_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 348
Target Start/End: Original strand, 6998254 - 6998582
Alignment:
| Q |
19 |
aaatacacgatacatttttcagttccacgagtgtta-tcctgtcaatggtcttcttaccacttgccaataaatgccaaattttgaaggtaaattcatagg |
117 |
Q |
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| T |
6998254 |
aaatacacgatacatttttcagttccacgagtgttaatcctgtcaatggtcttcttaccacttgccaataaatgccaaattttgaaggtaaattcatagg |
6998353 |
T |
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| Q |
118 |
tatcttggagttggagtttgattggtagtgatactatgcaaaatttatttaacatttaaatctattttagaataaattaatctcaaaatttgacatgtca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6998354 |
tatcttggagttggagtttgattggtagtgatactaagcaaagtttatttaacatttaaatctattttagaataaattaatctcaaaatttgacatgtca |
6998453 |
T |
|
| Q |
218 |
ttgattaataacatgaaagttacatacccgaacaaactacatgaatatatcattgagttcaccttaaaatattgatatggcaacatccttctcacaatcc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6998454 |
ttgattaataacatgaaagttacatacccgaacaaactacgtga--atatcattgagttcaccttaaaatattgatatggcaacatccttctcacaatcc |
6998551 |
T |
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| Q |
318 |
aacgtgtactgatagcaactccctccccttt |
348 |
Q |
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| T |
6998552 |
aacgtggactgatagcaactccctccccttt |
6998582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 4626785 - 4626723
Alignment:
| Q |
158 |
aaatttatttaacatttaaatctattttagaataaattaatctcaaaatttgacatgtcattg |
220 |
Q |
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| T |
4626785 |
aaatttgtttaacatttaaacttattttaaaataaattaatgtaaaaatatgacatgtcattg |
4626723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 37492722 - 37492660
Alignment:
| Q |
157 |
aaaatttatttaacatttaaatctattttagaataaattaatctcaaaatttgacatgtcatt |
219 |
Q |
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| T |
37492722 |
aaaatttgtttaacatttaaatttattttaaaataaattaatgtaaaaatatgacatgacatt |
37492660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 4692949 - 4693016
Alignment:
| Q |
159 |
aatttatttaacatttaaatctattttagaataaattaatctcaaaatttgacatgtcattgattaat |
226 |
Q |
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| T |
4692949 |
aatttgtttaacatttaaatttattttaaaataaattaagatgcaaatatgacatgtcattgaataat |
4693016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 39489669 - 39489736
Alignment:
| Q |
155 |
gcaaaatttatttaacatttaaatctattttagaataaattaatctcaaaatttgacatgtcattgatt |
223 |
Q |
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| T |
39489669 |
gcaaaatttatttaatatttgaatttattttaaaataaattaatat-aaaatatgacatgatattgatt |
39489736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 198
Target Start/End: Original strand, 35120156 - 35120197
Alignment:
| Q |
157 |
aaaatttatttaacatttaaatctattttagaataaattaat |
198 |
Q |
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| T |
35120156 |
aaaatttatttaacatttaaatttattttaaaataaattaat |
35120197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 34430514 - 34430449
Alignment:
| Q |
156 |
caaaatttatttaacatttaaatctattttagaataaattaatctcaaaatttgacatgtcattga |
221 |
Q |
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| T |
34430514 |
caaaatttgtttaacatttaaatttattttaatataaattaatataaaaatatgacatgacattga |
34430449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 11443847 - 11443890
Alignment:
| Q |
155 |
gcaaaatttatttaacatttaaatctattttagaataaattaat |
198 |
Q |
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| T |
11443847 |
gcaaaatttgtttaacatttaaatttattttaaaataaattaat |
11443890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 513981 - 513924
Alignment:
| Q |
156 |
caaaatttatttaacatttaaatctattttagaataaattaatctcaaaatttgacat |
213 |
Q |
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|||||||| | |||||||||||| ||||||| ||||||||||| | ||||| |||||| |
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| T |
513981 |
caaaatttgtgtaacatttaaatttattttaaaataaattaatataaaaatatgacat |
513924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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