View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4674_high_4 (Length: 304)

Name: NF4674_high_4
Description: NF4674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4674_high_4
NF4674_high_4
[»] chr2 (15 HSPs)
chr2 (105-288)||(43429377-43429560)
chr2 (96-225)||(402743-402875)
chr2 (1-68)||(18959118-18959182)
chr2 (1-70)||(19863439-19863505)
chr2 (1-70)||(19867771-19867837)
chr2 (1-70)||(19872672-19872738)
chr2 (25-68)||(3481361-3481404)
chr2 (1-70)||(9531611-9531677)
chr2 (1-70)||(10516760-10516826)
chr2 (1-70)||(31959726-31959792)
chr2 (1-70)||(45077934-45078000)
chr2 (25-66)||(887097-887138)
chr2 (1-68)||(33504431-33504495)
chr2 (7-69)||(3030885-3030943)
chr2 (26-70)||(34931637-34931681)
[»] chr5 (13 HSPs)
chr5 (1-70)||(6859586-6859652)
chr5 (1-70)||(5558346-5558412)
chr5 (2-70)||(9235252-9235316)
chr5 (28-70)||(6889198-6889240)
chr5 (7-70)||(18855812-18855872)
chr5 (1-70)||(11675735-11675801)
chr5 (1-69)||(38132542-38132607)
chr5 (25-70)||(418066-418111)
chr5 (1-68)||(4496591-4496655)
chr5 (1-68)||(20456980-20457044)
chr5 (25-70)||(41833689-41833734)
chr5 (7-65)||(32442142-32442197)
chr5 (7-65)||(42272687-42272742)
[»] chr3 (14 HSPs)
chr3 (1-70)||(45486860-45486926)
chr3 (1-65)||(45374488-45374549)
chr3 (1-70)||(48734158-48734224)
chr3 (25-68)||(49841823-49841866)
chr3 (1-70)||(54128584-54128650)
chr3 (1-70)||(19758092-19758157)
chr3 (1-70)||(48508440-48508506)
chr3 (1-62)||(52927859-52927917)
chr3 (1-57)||(40672378-40672431)
chr3 (1-68)||(19676092-19676156)
chr3 (1-68)||(32170612-32170676)
chr3 (25-70)||(40991636-40991681)
chr3 (25-70)||(46148233-46148278)
chr3 (8-70)||(29601097-29601156)
[»] chr1 (18 HSPs)
chr1 (1-70)||(8796414-8796480)
chr1 (1-70)||(25715337-25715403)
chr1 (1-69)||(41560435-41560500)
chr1 (31-68)||(8676900-8676937)
chr1 (7-70)||(28090711-28090771)
chr1 (25-70)||(37294140-37294185)
chr1 (1-70)||(2429640-2429706)
chr1 (1-70)||(22175350-22175416)
chr1 (1-70)||(37462887-37462953)
chr1 (1-70)||(44941787-44941853)
chr1 (1-70)||(45510844-45510910)
chr1 (25-70)||(1290063-1290108)
chr1 (25-70)||(2544798-2544843)
chr1 (25-70)||(17269021-17269066)
chr1 (1-67)||(7133313-7133376)
chr1 (26-70)||(9599427-9599471)
chr1 (26-70)||(27072520-27072564)
chr1 (8-70)||(28511819-28511878)
[»] chr8 (15 HSPs)
chr8 (1-69)||(27556313-27556378)
chr8 (1-70)||(490540-490606)
chr8 (1-69)||(1313770-1313835)
chr8 (1-65)||(35320411-35320472)
chr8 (25-70)||(35914633-35914678)
chr8 (10-68)||(32931167-32931222)
chr8 (1-70)||(44529430-44529496)
chr8 (1-70)||(45041327-45041393)
chr8 (1-70)||(45419440-45419506)
chr8 (1-65)||(1928598-1928659)
chr8 (2-70)||(3473775-3473840)
chr8 (25-66)||(2518430-2518471)
chr8 (1-70)||(8255542-8255610)
chr8 (25-70)||(21425251-21425296)
chr8 (26-70)||(43904698-43904742)
[»] chr6 (5 HSPs)
chr6 (7-70)||(34522-34582)
chr6 (1-70)||(12890780-12890846)
chr6 (25-70)||(7337227-7337272)
chr6 (25-70)||(8364761-8364806)
chr6 (1-68)||(21089604-21089668)
[»] chr4 (12 HSPs)
chr4 (1-70)||(45209216-45209282)
chr4 (7-70)||(35690476-35690536)
chr4 (31-70)||(12443300-12443339)
chr4 (1-70)||(29399009-29399075)
chr4 (1-70)||(39100547-39100613)
chr4 (1-61)||(15665315-15665372)
chr4 (1-68)||(436436-436500)
chr4 (1-68)||(23906308-23906372)
chr4 (7-70)||(28236387-28236447)
chr4 (1-68)||(48622554-48622618)
chr4 (8-70)||(13805283-13805342)
chr4 (26-70)||(51176779-51176823)
[»] chr7 (9 HSPs)
chr7 (2-70)||(9210716-9210781)
chr7 (2-70)||(28627945-28628010)
chr7 (1-59)||(6263475-6263530)
chr7 (25-69)||(38135245-38135289)
chr7 (1-70)||(36101788-36101854)
chr7 (1-70)||(40979939-40980005)
chr7 (25-70)||(27893595-27893640)
chr7 (25-70)||(45054335-45054380)
chr7 (31-71)||(36239834-36239874)
[»] scaffold0050 (1 HSPs)
scaffold0050 (2-70)||(58238-58303)
[»] scaffold0392 (1 HSPs)
scaffold0392 (1-68)||(6783-6847)
[»] scaffold0245 (1 HSPs)
scaffold0245 (25-70)||(16468-16513)
[»] scaffold0024 (1 HSPs)
scaffold0024 (31-68)||(48154-48191)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 105 - 288
Target Start/End: Original strand, 43429377 - 43429560
Alignment:
Q  105 aattgtttctttccctgcatgaaaactacaagaaacctgaaaatgaaaagaaaatttcaaaaccttttgatgattcttgaaatctgattccgatcaagat 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||    
T  43429377 aattgtttctttccctgcatgaaaactacaagaaacctgaaaatgaaaagaaaatttcagaaccttttgattattcttgaaatctgattccgatcatgat 43429476  T
Q  205 taccaatatctccaagaacttcacggatgcgnnnnnnngctttctgcttcaccgtgtctttgcctgcaagaaacatgatatcat 288  Q
    |||||||||||| ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  43429477 taccaatatctcgaagaacttcacggatgcgtttttttgctttctgcttcaccgtgtctttgcctgcaagaaacatgatatcat 43429560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 96 - 225
Target Start/End: Original strand, 402743 - 402875
Alignment:
Q  96 agcttggttaattgtttctttccctgcatgaaa---actacaagaaacctgaaaatgaaaagaaaatttcaaaaccttttgatgattcttgaaatctgat 192  Q
    |||||||||||||||||||||||||||| ||||   |||||||||||| |||    |||||||||||| || |||||| |||||  || ||||||||| |    
T  402743 agcttggttaattgtttctttccctgcaagaaaagtactacaagaaacttgattgcgaaaagaaaattacagaaccttgtgatgggtcgtgaaatctggt 402842  T
Q  193 tccgatcaagattaccaatatctccaagaactt 225  Q
    |||  |||||||||||  ||||||||| |||||    
T  402843 tcccctcaagattaccgctatctccaataactt 402875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 18959182 - 18959118
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcata 68  Q
    ||||| ||||||||||||||||   |||||||||||||||| ||||||||||||||| ||||||||||    
T  18959182 caagccttatcccactaagtgg---ggtcagctacatggatcaaattatgccataatgttctatcata 18959118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 19863505 - 19863439
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||||||||||||||   || | ||||||||||| |||| |||||||||| ||||||||||||    
T  19863505 caagctttatcccactaagtgg---ggacggctacatggatcaaatcatgccataatgttctatcataaa 19863439  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 19867837 - 19867771
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||||||||||||||   || | ||||||||||| |||| |||||||||| ||||||||||||    
T  19867837 caagctttatcccactaagtgg---ggacggctacatggatcaaatcatgccataatgttctatcataaa 19867771  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 19872738 - 19872672
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||||||||||||||   || | ||||||||||| |||| |||||||||| ||||||||||||    
T  19872738 caagctttatcccactaagtgg---ggacggctacatggatcaaatcatgccataatgttctatcataaa 19872672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 3481404 - 3481361
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcata 68  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||    
T  3481404 gggtcagctacatggatcaaattacgccataatgttctatcata 3481361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 9531611 - 9531677
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||| ||||||||||| |||||| |||||||| ||| ||||||||    
T  9531611 caagccttatcccactaagtgg---ggtcggctacatggatcaaattacgccataatgttccatcataaa 9531677  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 10516760 - 10516826
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| |||||||||||||||    | |||||||||||||| |||||| ||||||||||| |||||||||    
T  10516760 caagccttatcccactaagtga---gatcagctacatggatcaaattacgccataatattttatcataaa 10516826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31959792 - 31959726
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| |||||| |||||||||   |||| ||||||||||| ||||||||||||| | ||||||||||||    
T  31959792 caagccttatcctactaagtgg---ggtctgctacatggatcaaattatgccatagtgttctatcataaa 31959726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45078000 - 45077934
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||| ||||||||||   |||| | ||||||||| |||||||||||| || ||||||||||||    
T  45078000 caagctttatctcactaagtgg---ggtcggttacatggatcaaattatgccattatgttctatcataaa 45077934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 887097 - 887138
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatca 66  Q
    ||||||||||||||||| |||||| |||||||| ||||||||    
T  887097 gggtcagctacatggatcaaattacgccataatgttctatca 887138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 33504495 - 33504431
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcata 68  Q
    ||||| |||||||||||||||   ||||| |||| |||||| |||||| |||||||| ||||||||||    
T  33504495 caagccttatcccactaagtg---gggtcggctagatggatcaaattacgccataatgttctatcata 33504431  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 3030943 - 3030885
Alignment:
Q  7 ttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataa 69  Q
    ||||||||||||||||   |||| ||||||||||| ||||||||||||||| || ||||||||    
T  3030943 ttatcccactaagtgg---ggtc-gctacatggataaaattatgccataatgttgtatcataa 3030885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 34931681 - 34931637
Alignment:
Q  26 ggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||| |||| |||||| ||||||||||||||| ||||||||||||    
T  34931681 ggtcggctatatggatcaaattatgccataatgttctatcataaa 34931637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 6859652 - 6859586
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   ||||||| |||||||| ||||||||||||||| ||||||||||||    
T  6859652 caagccttatcccactaagtgg---ggtcagcaacatggataaaattatgccataatgttctatcataaa 6859586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 5558412 - 5558346
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||| ||||||||||| ||||||||||||| | ||||||||||||    
T  5558412 caagccttatcccactaagtgg---ggtcggctacatggatcaaattatgccatagtgttctatcataaa 5558346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 9235316 - 9235252
Alignment:
Q  2 aagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||| ||||||||||||||||    ||| ||||||||||| ||||||||||||||| ||||||||||||    
T  9235316 aagccttatcccactaagtgg----gtcggctacatggatcaaattatgccataatgttctatcataaa 9235252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 6889240 - 6889198
Alignment:
Q  28 tcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||||||||||||| |||||||| ||||||||||||    
T  6889240 tcagctacatggattaaattacgccataatgttctatcataaa 6889198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 18855872 - 18855812
Alignment:
Q  7 ttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||||||||   |||| ||||||||||| ||||||||| ||||| ||||||||||||    
T  18855872 ttatcccactaagtgg---ggtcggctacatggatcaaattatgctataatgttctatcataaa 18855812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 11675801 - 11675735
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| |||||| |||||||||   |||| ||||||||||||||| || |||||||| ||||||||||||    
T  11675801 caagccttatccaactaagtgg---ggtcggctacatggattaaactacgccataatgttctatcataaa 11675735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 38132607 - 38132542
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataa 69  Q
    ||||| ||||||||||||||||   |||| || |||||||| |||||| |||||||| |||||||||||    
T  38132607 caagccttatcccactaagtgg---ggtcggccacatggatcaaattacgccataatgttctatcataa 38132542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 418066 - 418111
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  418066 gggtcggctacatggatcaaattacgccataatgttctatcataaa 418111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 4496655 - 4496591
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcata 68  Q
    ||||| ||||||||||||||||   |||| ||||||||||| |||| |||||||| | ||||||||||    
T  4496655 caagccttatcccactaagtgg---ggtcggctacatggatcaaatgatgccatagtgttctatcata 4496591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 20457044 - 20456980
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcata 68  Q
    ||||| ||||||||||||||||   |||| ||||||||||| |||| | |||||||| ||||||||||    
T  20457044 caagccttatcccactaagtgg---ggtcggctacatggatcaaatgacgccataatgttctatcata 20456980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 41833689 - 41833734
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||||||||||||||||  ||| ||| ||||||||||||    
T  41833689 gggtcagctacatggattaaattacaccaaaatgttctatcataaa 41833734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 32442142 - 32442197
Alignment:
Q  7 ttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatc 65  Q
    |||||||||||||||||   ||| ||||||||||| |||||| |||||||| |||||||    
T  32442142 ttatcccactaagtgga---gtcggctacatggatcaaattacgccataatgttctatc 32442197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 42272742 - 42272687
Alignment:
Q  7 ttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatc 65  Q
    ||||||||||||||||   |||||||||||||||| |||| | |||||||| |||||||    
T  42272742 ttatcccactaagtgg---ggtcagctacatggatcaaatgacgccataatgttctatc 42272687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 45486860 - 45486926
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||||||||||||||   || | ||||||||||| ||||||||||||||| ||||||||||||    
T  45486860 caagctttatcccactaagtgg---ggccggctacatggatcaaattatgccataatgttctatcataaa 45486926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 45374488 - 45374549
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatc 65  Q
    ||||| ||||||||||||||||   ||||||||||||||||||||||| |||||||| |||||||    
T  45374488 caagccttatcccactaagtgg---ggtcagctacatggattaaattacgccataatgttctatc 45374549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 48734158 - 48734224
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||||||||||||||| || ||| |||||||| ||||||||||||    
T  48734158 caagccttatcccactaagtgg---ggtcagctacatggatcaacttacgccataatgttctatcataaa 48734224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 49841866 - 49841823
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcata 68  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||    
T  49841866 gggtcagctacatggatcaaattatgccataatgttctatcata 49841823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 54128650 - 54128584
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   ||||  |||||||||| ||||||||||||||| ||||||||||||    
T  54128650 caagccttatcccactaagtgg---ggtcgcctacatggatcaaattatgccataatgttctatcataaa 54128584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 19758157 - 19758092
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||| ||||||||||| ||||||| ||||||| ||||||||||||    
T  19758157 caagccttatcccactaagtgg---ggtc-gctacatggatcaaattataccataatgttctatcataaa 19758092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 48508506 - 48508440
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||| ||||||||||| |||||| |||||| | ||||||||||||    
T  48508506 caagccttatcccactaagtgg---ggtcggctacatggatcaaattacgccatagtgttctatcataaa 48508440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 52927859 - 52927917
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattct 62  Q
    ||||| ||||||||||||||||   |||| ||||||||||| ||||||||||||||| ||||    
T  52927859 caagccttatcccactaagtgg---ggtcggctacatggatcaaattatgccataatgttct 52927917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40672378 - 40672431
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataat 57  Q
    ||||| |||||||||||||||    |||||||||||||||| |||||||||||||||    
T  40672378 caagccttatcccactaagtga---ggtcagctacatggatcaaattatgccataat 40672431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19676092 - 19676156
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcata 68  Q
    ||||| ||||||||||||||||   |||||||||||||||| |||| | ||||||||  |||||||||    
T  19676092 caagccttatcccactaagtgg---ggtcagctacatggatcaaatcacgccataatgctctatcata 19676156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 32170676 - 32170612
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcata 68  Q
    ||||||||||| ||||||||||   |||| ||||||||||| |||||||| |||||| || |||||||    
T  32170676 caagctttatctcactaagtgg---ggtcggctacatggatcaaattatgtcataatgttatatcata 32170612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 40991681 - 40991636
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||||||||| ||||||  ||||||| ||||||||||||    
T  40991681 gggtcagctacatggatcaaattacaccataatgttctatcataaa 40991636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 46148278 - 46148233
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  46148278 gggtcggctacatggatcaaattacgccataatgttctatcataaa 46148233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 29601156 - 29601097
Alignment:
Q  8 tatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||||||||||||||   |||||||||||||||| ||||||   |||||| ||||||||||||    
T  29601156 tatcccactaagtgg---ggtcagctacatggatcaaattacatcataatgttctatcataaa 29601097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8796480 - 8796414
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||| |||||||||||||||||| |||||||| ||||||||||||    
T  8796480 caagccttatcccactaagtgg---ggtcggctacatggattaaattacgccataatgttctatcataaa 8796414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 25715337 - 25715403
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| |||||||||||||||    |||| ||||||||||| |||||| |||||||||||||||||||||    
T  25715337 caagccttatcccactaagtga---ggtcggctacatggatcaaattacgccataatattctatcataaa 25715403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 41560500 - 41560435
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataa 69  Q
    ||||| ||||||||||||||||   |||| ||||||||||| |||||| |||||||| |||||||||||    
T  41560500 caagccttatcccactaagtgg---ggtcggctacatggatcaaattacgccataatgttctatcataa 41560435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 8676900 - 8676937
Alignment:
Q  31 gctacatggattaaattatgccataatattctatcata 68  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  8676900 gctacatggatcaaattatgccataatattctatcata 8676937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 28090711 - 28090771
Alignment:
Q  7 ttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||||||||   |||| ||||||||||| |||||| |||||||| ||||||||||||    
T  28090711 ttatcccactaagtgg---ggtcggctacatggatcaaattacgccataatgttctatcataaa 28090771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 37294140 - 37294185
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||    
T  37294140 gggtcagctacatggatcaaattacgccataatgttctatcataaa 37294185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 2429640 - 2429706
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||||||| |||||||||||||   |||| ||||| ||||| |||||| |||||||| ||||||||||||    
T  2429640 caagctttgtcccactaagtgg---ggtcggctacgtggatcaaattacgccataatgttctatcataaa 2429706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 22175416 - 22175350
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||| ||||||||||| ||||| | ||||||| ||||||||||||    
T  22175416 caagccttatcccactaagtgg---ggtcggctacatggatcaaattctaccataatgttctatcataaa 22175350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 37462887 - 37462953
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||| ||||||||||| |||||| |||||||| |||||| |||||    
T  37462887 caagccttatcccactaagtgg---ggtcggctacatggatcaaattacgccataatgttctatgataaa 37462953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 44941787 - 44941853
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||| ||||||||||| |||||| |||||| | ||||||||||||    
T  44941787 caagccttatcccactaagtgg---ggtcggctacatggatcaaattacgccatagtgttctatcataaa 44941853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 45510844 - 45510910
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||||||||||||||||||||   ||||| |||||||||||||||||| || ||  | ||||||||||||    
T  45510844 caagctttatcccactaagtg---gggtcggctacatggattaaattacgctatggtgttctatcataaa 45510910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 1290063 - 1290108
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| || |||||||| ||||||||||||||| ||||||||||||    
T  1290063 gggtcggccacatggatcaaattatgccataatgttctatcataaa 1290108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 2544843 - 2544798
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||| ||||||||||||||| |||||| |||||    
T  2544843 gggtcggctacatggatcaaattatgccataatgttctattataaa 2544798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 17269021 - 17269066
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  17269021 gggtcggctacatggatcaaattacgccataatgttctatcataaa 17269066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 7133313 - 7133376
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcat 67  Q
    ||||| || |||||||||||||   |||||||||||||||| |||||| |||| ||| |||||||||    
T  7133313 caagccttttcccactaagtgg---ggtcagctacatggatcaaattaggccaaaatgttctatcat 7133376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 9599427 - 9599471
Alignment:
Q  26 ggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||||||||||||||| |||||| |||||||  ||||||||||||    
T  9599427 ggtcagctacatggatcaaattacgccataacgttctatcataaa 9599471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 27072520 - 27072564
Alignment:
Q  26 ggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||| ||||||||||| |||||| |||||||| ||||||||||||    
T  27072520 ggtcggctacatggatcaaattacgccataatgttctatcataaa 27072564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 28511819 - 28511878
Alignment:
Q  8 tatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||||||||||||||   |||| ||||||| ||| |||||| |||||||| ||||||||||||    
T  28511819 tatcccactaagtgg---ggtcggctacattgatcaaattacgccataatgttctatcataaa 28511878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 27556313 - 27556378
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataa 69  Q
    ||||||||| ||||||||||||   |||| ||||||||||| ||||||||||||||| |||||||||||    
T  27556313 caagctttaacccactaagtgg---ggtcggctacatggatcaaattatgccataatgttctatcataa 27556378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 490606 - 490540
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||| ||||||||||| |||||| |||||||| ||||||||||||    
T  490606 caagccttatcccactaagtgg---ggtcggctacatggatcaaattacgccataatgttctatcataaa 490540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 1313835 - 1313770
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataa 69  Q
    ||||| ||||||||||||||||   ||||| |||||||||| |||||| |||||||| |||||||||||    
T  1313835 caagcattatcccactaagtgg---ggtcaactacatggataaaattacgccataatgttctatcataa 1313770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 35320411 - 35320472
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatc 65  Q
    ||||||||||||||||||||||   ||||||||||||  ||||||||| |||||||| |||||||    
T  35320411 caagctttatcccactaagtgg---ggtcagctacattaattaaattaagccataatgttctatc 35320472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 35914633 - 35914678
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||||||||| |||||| |||||||| ||||||||||||    
T  35914633 gggtcagctacatggatcaaattacgccataatgttctatcataaa 35914678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 32931222 - 32931167
Alignment:
Q  10 tcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcata 68  Q
    |||||||||||||   |||| ||||||||||| ||||||||||||||| ||||||||||    
T  32931222 tcccactaagtgg---ggtcggctacatggatcaaattatgccataatgttctatcata 32931167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 44529496 - 44529430
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||| ||||||||||| |||| |||||||| | ||||||||||||    
T  44529496 caagccttatcccactaagtgg---ggtcggctacatggatcaaatgatgccatagtgttctatcataaa 44529430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 45041327 - 45041393
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||||||||||||||| |||||| ||||||||   ||||||||||    
T  45041327 caagccttatcccactaagtgg---ggtcagctacatggatcaaattacgccataatgcgctatcataaa 45041393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 45419506 - 45419440
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||| ||||||||||| ||||||  ||||||| ||||||||||||    
T  45419506 caagccttatcccactaagtgg---ggtcggctacatggatcaaattacaccataatgttctatcataaa 45419440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 1928598 - 1928659
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatc 65  Q
    ||||| ||||||||||||||||   |||| ||||||||||| |||||| |||||||| |||||||    
T  1928598 caagccttatcccactaagtgg---ggtcggctacatggatcaaattacgccataatgttctatc 1928659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 3473840 - 3473775
Alignment:
Q  2 aagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||| ||||||||||||||||   |||| |||| ||||||||||||  |||||||||||| ||||||||    
T  3473840 aagccttatcccactaagtgg---ggtcggctaaatggattaaatttcgccataatattcaatcataaa 3473775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 2518430 - 2518471
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatca 66  Q
    |||||||||||| |||| ||||||||||||||| ||||||||    
T  2518430 gggtcagctacaaggatcaaattatgccataatgttctatca 2518471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 8255542 - 8255610
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||||||||||||||||||||| ||  || ||||||||||| |||||| |||||| |  |||||||||||    
T  8255542 caagctttatcccactaagtgg-tgtctcggctacatggatcaaattacgccatattggtctatcataaa 8255610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 21425296 - 21425251
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||| |||||||||||||||  |||||||||||    
T  21425296 gggtctgctacatggatcaaattatgccataatggtctatcataaa 21425251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 43904698 - 43904742
Alignment:
Q  26 ggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||| ||||||||||| |||||| |||||||| ||||||||||||    
T  43904698 ggtcggctacatggatcaaattacgccataatgttctatcataaa 43904742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 34522 - 34582
Alignment:
Q  7 ttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||||||||   |||||||||||||||| |||||| |||||||| ||||||||||||    
T  34522 ttatcccactaagtgg---ggtcagctacatggatcaaattacgccataatgttctatcataaa 34582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 12890846 - 12890780
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||| ||||||||||| |||||| |||||| | ||||||||||||    
T  12890846 caagccttatcccactaagtgg---ggtcggctacatggatcaaattacgccatagtgttctatcataaa 12890780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 7337227 - 7337272
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||  |||||| |||||||||||||||||||||    
T  7337227 gggtcggctacatggaccaaattacgccataatattctatcataaa 7337272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 8364806 - 8364761
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||| |||||| |||||||| ||||||||||||    
T  8364806 gggtcggctacatggatcaaattacgccataatgttctatcataaa 8364761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 21089668 - 21089604
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcata 68  Q
    ||||| ||||||||||||||||   || ||||||||||||| |||  |||||||||| ||||||||||    
T  21089668 caagccttatcccactaagtgg---gggcagctacatggatcaaacaatgccataatgttctatcata 21089604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 45209216 - 45209282
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||| ||||||||||| ||| || |||||||||||||||||||||    
T  45209216 caagccttatcccactaagtgg---ggtcggctacatggatcaaactacgccataatattctatcataaa 45209282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 35690536 - 35690476
Alignment:
Q  7 ttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||||||||   |||| ||||||||||| |||||| |||||||| ||||||||||||    
T  35690536 ttatcccactaagtgg---ggtcggctacatggatcaaattacgccataatgttctatcataaa 35690476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 12443339 - 12443300
Alignment:
Q  31 gctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  12443339 gctacatggatcaaattatgccataatgttctatcataaa 12443300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 29399075 - 29399009
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| || |||||||||||||   ||||||||||||| || |||||| |||||||| ||||||||||||    
T  29399075 caagccttttcccactaagtgg---ggtcagctacatgaatcaaattacgccataatgttctatcataaa 29399009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 39100547 - 39100613
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||| ||||||||||||| |||| |||||||| |||||| |||||    
T  39100547 caagccttatcccactaagtgg---ggtcggctacatggattatattacgccataatgttctatgataaa 39100613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 15665372 - 15665315
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattc 61  Q
    ||||| ||||||||||||||||   |||||||||||||||| |||||| ||| ||||||||    
T  15665372 caagccttatcccactaagtgg---ggtcagctacatggatcaaattacgccgtaatattc 15665315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 436500 - 436436
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcata 68  Q
    ||||| ||||||||||||||||   |||| ||||||||||| |||| |||||||| | ||||||||||    
T  436500 caagccttatcccactaagtgg---ggtcggctacatggatcaaatgatgccatagtgttctatcata 436436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 23906308 - 23906372
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcata 68  Q
    ||||| ||||||||||||||||   |||||||||||||||| |||| | |||||| | ||||||||||    
T  23906308 caagccttatcccactaagtgg---ggtcagctacatggatcaaatgacgccatagtgttctatcata 23906372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Complemental strand, 28236447 - 28236387
Alignment:
Q  7 ttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||||||||||||||   |||| ||||||| ||| ||||||  ||||||||||||||||||||    
T  28236447 ttatcccactaagtgg---ggtcggctacatagatcaaattacaccataatattctatcataaa 28236387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 48622554 - 48622618
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcata 68  Q
    ||||| ||||||||||||||||   |||| |||||||||||||||| | |||||| | ||||||||||    
T  48622554 caagccttatcccactaagtgg---ggtcggctacatggattaaatgacgccatagtgttctatcata 48622618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 13805283 - 13805342
Alignment:
Q  8 tatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||||||||||||||   |||  ||||||||||| ||||||| ||||||| ||||||||||||    
T  13805283 tatcccactaagtgg---ggttggctacatggatcaaattatcccataatgttctatcataaa 13805342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 51176823 - 51176779
Alignment:
Q  26 ggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||| ||||||||||| ||||||||||||||| ||||||| ||||    
T  51176823 ggtccgctacatggatcaaattatgccataatgttctatcctaaa 51176779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 9210716 - 9210781
Alignment:
Q  2 aagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||| ||||||||||||||||   |||||||||||||||| |||||| |||||||| || |||||||||    
T  9210716 aagccttatcccactaagtgg---ggtcagctacatggatcaaattacgccataatgttgtatcataaa 9210781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 28627945 - 28628010
Alignment:
Q  2 aagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||| |||||||||||||||||   ||| ||||||||||| |||||| |||||||| ||||||||||||    
T  28627945 aagccttatcccactaagtgga---gtcggctacatggatcaaattacgccataatgttctatcataaa 28628010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6263530 - 6263475
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatat 59  Q
    ||||| ||||||||||||||||   |||| ||||||||||| |||||||||||||||||    
T  6263530 caagccttatcccactaagtgg---ggtcggctacatggatcaaattatgccataatat 6263475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 38135245 - 38135289
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataa 69  Q
    |||||||||| |||||| |||||| ||||||||||||||||||||    
T  38135245 gggtcagctagatggatcaaattacgccataatattctatcataa 38135289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 36101788 - 36101854
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   ||||| |||||||||| |||||| | |||||| ||||||||||||    
T  36101788 caagccttatcccactaagtgg---ggtcaactacatggatcaaattacgtcataatgttctatcataaa 36101854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 40979939 - 40980005
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||||||||   |||| ||||||||||| |||||| |||||| | ||||||||||||    
T  40979939 caagccttatcccactaagtgg---ggtcggctacatggatcaaattacgccatagtgttctatcataaa 40980005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 27893595 - 27893640
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| |||||||| || ||||||||||||||| ||||||||||||    
T  27893595 gggtcggctacatgaatcaaattatgccataatgttctatcataaa 27893640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 45054335 - 45054380
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| ||||||||||  |||||| |||||||||||||||||||||    
T  45054335 gggtcggctacatggaccaaattacgccataatattctatcataaa 45054380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 36239834 - 36239874
Alignment:
Q  31 gctacatggattaaattatgccataatattctatcataaag 71  Q
    ||||||||||| |||||| |||||||| |||||||||||||    
T  36239834 gctacatggatcaaattacgccataatgttctatcataaag 36239874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 58238 - 58303
Alignment:
Q  2 aagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    |||| ||||||||||||||   |||||| ||||||||||| |||||| | |||||| ||||||||||||    
T  58238 aagccttatcccactaagt---tgggtcggctacatggatcaaattacgacataatgttctatcataaa 58303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0392 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 6783 - 6847
Alignment:
Q  1 caagctttatcccactaagtggatgggtcagctacatggattaaattatgccataatattctatcata 68  Q
    ||||| ||||||||||||||||   |||  ||||||||||| ||||||||||||||| || |||||||    
T  6783 caagccttatcccactaagtgg---ggttggctacatggatcaaattatgccataatgttatatcata 6847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 16468 - 16513
Alignment:
Q  25 gggtcagctacatggattaaattatgccataatattctatcataaa 70  Q
    ||||| || |||||||| ||||||||||||||| ||||||||||||    
T  16468 gggtcggccacatggatcaaattatgccataatgttctatcataaa 16513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 48154 - 48191
Alignment:
Q  31 gctacatggattaaattatgccataatattctatcata 68  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  48154 gctacatggatcaaattacgccataatattctatcata 48191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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