View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4674_low_9 (Length: 233)
Name: NF4674_low_9
Description: NF4674
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4674_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 35151506 - 35151713
Alignment:
| Q |
18 |
aaaaccttcaaaggtgaagatcaaagcagcaatcgtgttgagttgattccagaggtactaaaatatactcaacatcttccattagcaattagaatagttg |
117 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
35151506 |
aaaaccttcaaaggtgaagatcaaagcagcaattgtgttgagttgattccagaggtactaaaatatactcaacatcttctattagtaattagaatagttg |
35151605 |
T |
|
| Q |
118 |
gttcattcttgtgtacccgagatgctactcagtggagagatgctttggatagattgttgaagaatcctgatagtaaaattatggatgtgcttcagatgag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35151606 |
gttcattcttgtgtacccgagatgctactcagtggagagatgctttggatagattgaagaagaatcctgatagtaaaatagtggatgtgcttcagatgag |
35151705 |
T |
|
| Q |
218 |
tgatgatg |
225 |
Q |
| |
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|| ||||| |
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| T |
35151706 |
tgttgatg |
35151713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 225
Target Start/End: Complemental strand, 35044876 - 35044657
Alignment:
| Q |
6 |
ctttttcgtagaaaaaccttcaaaggtgaagatcaaagcagcaatcgtgttgagttgattccagaggtactaaaatatactcaacatcttccattagcaa |
105 |
Q |
| |
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||||||| |||||| |||||||||||||||| |||||| | || | ||||||| ||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
35044876 |
ctttttcatagaaatgccttcaaaggtgaagaccaaagctacgattttattgagttaattccggaggtactaaaatatgctcaacatcttccattagcaa |
35044777 |
T |
|
| Q |
106 |
ttagaatagttggttcattcttgtgtacccgagatgctactcagtggagagatgctttggatagattgttgaagaatcctgatagtaaaattatggatgt |
205 |
Q |
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||||| |||||| ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||||| || |||||||| |||||||| |
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| T |
35044776 |
ttagagtagttgcttctttcttgtgtacccgagatgctactctgtggatagatgctttggatagattgaggaacaatccagacagtaaaataatggatgt |
35044677 |
T |
|
| Q |
206 |
gcttcagatgagtgatgatg |
225 |
Q |
| |
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|||||||||||||| ||||| |
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| T |
35044676 |
gcttcagatgagtgttgatg |
35044657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 2 - 217
Target Start/End: Complemental strand, 35104719 - 35104504
Alignment:
| Q |
2 |
tgaactttttcgtagaaaaaccttcaaaggtgaagatcaaagcagcaatcgtgttgagttgattccagaggtactaaaatatactcaacatcttccatta |
101 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| |||| ||| || |||| ||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
35104719 |
tgaacttttttgtagaaaagccttcaaaggtgaagaccaaaccagtgattgtgtcgagttgattccggaggtactaaaatatgctcaacatcttccatta |
35104620 |
T |
|
| Q |
102 |
gcaattagaatagttggttcattcttgtgtacccgagatgctactcagtggagagatgctttggatagattgttgaagaatcctgatagtaaaattatgg |
201 |
Q |
| |
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||||||| | |||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| ||| ||| | || || ||||||||||||| |
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| T |
35104619 |
gcaattaaagtagttggttctttcttgtgtacccgagatgctactcagtggaaagatgctttggctagtttgaagaatagcccagacagtaaaattatgg |
35104520 |
T |
|
| Q |
202 |
atgtgcttcagatgag |
217 |
Q |
| |
|
| |||||||||||||| |
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| T |
35104519 |
acgtgcttcagatgag |
35104504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 35182608 - 35182504
Alignment:
| Q |
69 |
gaggtactaaaatatactcaacatcttccattagcaattagaatagttggttcattcttgtgtacccgagatgctactcagtggagagatgctttggata |
168 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| || || |||| || || |||||||| || |||||||||| || ||||||||||||||| ||| |
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| T |
35182608 |
gaggtactaaaatatgctcaaggtcttccattagctgttcgagtagtggggtctttcttgtgcactcgagatgctaaccaatggagagatgctttgtata |
35182509 |
T |
|
| Q |
169 |
gattg |
173 |
Q |
| |
|
||||| |
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|
| T |
35182508 |
gattg |
35182504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 212
Target Start/End: Complemental strand, 35176649 - 35176506
Alignment:
| Q |
69 |
gaggtactaaaatatactcaacatcttccattagcaattagaatagttggttcattcttgtgtacccgagatgctactcagtggagagatgctttggata |
168 |
Q |
| |
|
||||||||||||||| ||||| ||||||||| ||| || || |||| || || |||||||| || |||||||||| || ||||||||||| ||| ||| |
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| T |
35176649 |
gaggtactaaaatatgctcaaggtcttccattggcagttcgagtagtggggtctttcttgtgcactcgagatgctaaccaatggagagatgccttgtata |
35176550 |
T |
|
| Q |
169 |
gattgttgaagaatcctgatagtaaaattatggatgtgcttcag |
212 |
Q |
| |
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||||| ||| ||||| || | ||| ||||||| ||||||||| |
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| T |
35176549 |
gattgaggaataatccagacaacaaagttatggacgtgcttcag |
35176506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 173
Target Start/End: Complemental strand, 35053754 - 35053677
Alignment:
| Q |
96 |
ccattagcaattagaatagttggttcattcttgtgtacccgagatgctactcagtggagagatgctttggatagattg |
173 |
Q |
| |
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|||||||||||| || |||| ||||| ||||||||||| ||| |||||| |||||||||||||| ||| |||||||| |
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| T |
35053754 |
ccattagcaattcgagtagtgggttctttcttgtgtactcgaaatgctaaccagtggagagatgccttgtatagattg |
35053677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 173
Target Start/End: Complemental strand, 498937 - 498825
Alignment:
| Q |
61 |
tgattccagaggtactaaaatatactcaacatcttccattagcaattagaatagttggttcattcttgtgtacccgagatgctactcagtggagagatgc |
160 |
Q |
| |
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||||||| |||||||||||||| ||||| |||||||| |||||||||| || | ||||| ||||| ||||||||| |||| || |||||||||| | | |
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| T |
498937 |
tgattccccaggtactaaaatatgctcaaggtcttccataagcaattagagtaatgggttctttcttatgtacccgaaatgccacacagtggagagctac |
498838 |
T |
|
| Q |
161 |
tttggatagattg |
173 |
Q |
| |
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|||||| ||||| |
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| T |
498837 |
cttggatggattg |
498825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 25477634 - 25477566
Alignment:
| Q |
61 |
tgattccagaggtactaaaatatactcaacatcttccattagcaattagaatagttggttcattcttgt |
129 |
Q |
| |
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||||||| ||||||||||| ||| ||||| ||||||||||||||||||| || | ||||| ||||||| |
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| T |
25477634 |
tgattccggaggtactaaagtatgctcaaggtcttccattagcaattagagtaatgggttctttcttgt |
25477566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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