View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4675-Insertion-4 (Length: 954)

Name: NF4675-Insertion-4
Description: NF4675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4675-Insertion-4
NF4675-Insertion-4
[»] chr5 (5 HSPs)
chr5 (370-954)||(29505192-29505768)
chr5 (170-283)||(26756221-26756334)
chr5 (170-290)||(26527091-26527212)
chr5 (172-224)||(16537996-16538048)
chr5 (307-362)||(26756157-26756211)
[»] chr1 (10 HSPs)
chr1 (370-507)||(44789810-44789948)
chr1 (406-507)||(44614766-44614868)
chr1 (406-507)||(44793701-44793803)
chr1 (694-824)||(44614594-44614725)
chr1 (694-824)||(44793844-44793975)
chr1 (514-604)||(44783525-44783614)
chr1 (830-944)||(44783806-44783921)
chr1 (652-720)||(44783626-44783694)
chr1 (650-814)||(11542418-11542579)
chr1 (825-887)||(11542609-11542671)
[»] scaffold0009 (1 HSPs)
scaffold0009 (170-290)||(199090-199211)
[»] scaffold0061 (1 HSPs)
scaffold0061 (727-826)||(27169-27269)
[»] scaffold0017 (1 HSPs)
scaffold0017 (727-826)||(171523-171623)
[»] chr3 (1 HSPs)
chr3 (514-632)||(26730285-26730405)
[»] chr8 (1 HSPs)
chr8 (188-274)||(14165407-14165494)
[»] chr6 (1 HSPs)
chr6 (170-226)||(9421741-9421798)
[»] chr2 (2 HSPs)
chr2 (311-362)||(11973516-11973566)
chr2 (170-223)||(42052919-42052973)


Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 370 - 954
Target Start/End: Original strand, 29505192 - 29505768
Alignment:
Q  370 aaaactgtcaaacttaaaattgaaagcctnnnnnnncacaatcaaatactaaagtcttaacaaaaatgtcatttattcatcctttcctattcctaccctt 469  Q
    ||||||||||||||| |||||||||||||       |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||    
T  29505192 aaaactgtcaaacttgaaattgaaagcctaacaaa-cacaataaaacactaaagtcttaacaaaa-tgtcatttattcatcctttcctattcctactctt 29505289  T
Q  470 aaccaaacagtcaagggtgtgtactccacactgctaactgatctaatctaaattattctataacagcaaacaatgtaatcatcccatgctttaggaatac 569  Q
    ||||||||||||||| ||||| |||||||||||||||     | ||||||||||||||||||| || |||| ||||||||||||||||||||||||||||    
T  29505290 aaccaaacagtcaagagtgtgaactccacactgctaa-----ccaatctaaattattctataatagaaaacgatgtaatcatcccatgctttaggaatac 29505384  T
Q  570 gagatcctgcaaaaataagaattaattttagtacttcgaaatgtcatcaaatcagtgcaattttagtgcatgaaaaaataataaaaaccagtaactaatc 669  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||| || |||||||  ||||| || |||||||||||    
T  29505385 gagatcctgcaaaaataagaattaattttagtacttgaaaatgtcataaaatcagtgcaattttagtacaagaaaaaa-cataaacacaagtaactaatc 29505483  T
Q  670 atttgatcaggacatgtgatatgtatagattaattcaactatgaaaacaacggtgacatatattatgagattgatactgtctttgatgacagatt-ttga 768  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||||| ||| |||  ||||||||||||||||||||||||||||||||||||| ||||    
T  29505484 atttgatcaggacatgtgatatgtatagattaacttgactatgaaaactacgatgatgtatattatgagattgatactgtctttgatgacagattattga 29505583  T
Q  769 acatagagaaatgcaatacaaattgtagaaaacctttagttacacatatatcaacagtcacatggttaatgaatttcagcagttaataaagcaaccatcc 868  Q
    |||| |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||    
T  29505584 acattgagaaatgcaatacaaattgtagaaaatgtttagttacacatatatcaacagtcacatggttaacgaattacagcagttaataaagcaactatcc 29505683  T
Q  869 caaggctaaaagttttcatgattcggttaaaccat-aaagtgtgaagtaacaaagtaggaaagaacagaagtacctggcttagcatt 954  Q
    ||  |||||||||||||||||||| |||||||||| ||||||  || |||| |||||||||||||||||||||||| ||||||||||    
T  29505684 cattgctaaaagttttcatgattcagttaaaccataaaagtg-aaactaactaagtaggaaagaacagaagtacct-gcttagcatt 29505768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 170 - 283
Target Start/End: Complemental strand, 26756334 - 26756221
Alignment:
Q  170 aagaagccaaaataaaatataactaatcaaaaaggttcaactaacacaaggtgtgtcnnnnnnnnccatcgaaaacaaatacaaagttattatcctgctg 269  Q
    ||||||||||||| |||||||||||||||||||||||| |||| ||||| ||||| |        |||| ||||||||||||||||||||||||||||||    
T  26756334 aagaagccaaaatgaaatataactaatcaaaaaggttctactagcacaaagtgtgccaagaaaaaccattgaaaacaaatacaaagttattatcctgctg 26756235  T
Q  270 ccataaagcccaac 283  Q
    ||||||||| ||||    
T  26756234 ccataaagctcaac 26756221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 170 - 290
Target Start/End: Original strand, 26527091 - 26527212
Alignment:
Q  170 aagaagccaaaataaaatataactaatcaaaaa-ggttcaactaacacaaggtgtgtcnnnnnnnnccatcgaaaacaaatacaaagttattatcctgct 268  Q
    ||||||| ||||| ||||||||||||| ||||| |||||| |||||||||||||||||        ||||| ||||  |||||||||||| || ||||||    
T  26527091 aagaagctaaaatgaaatataactaattaaaaatggttcatctaacacaaggtgtgtcaagaaaaaccatccaaaaggaatacaaagttaataacctgct 26527190  T
Q  269 gccataaagcccaacggcagac 290  Q
    |||||||| | |||||||||||    
T  26527191 gccataaaactcaacggcagac 26527212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 16537996 - 16538048
Alignment:
Q  172 gaagccaaaataaaatataactaatcaaaaaggttcaactaacacaaggtgtg 224  Q
    |||| ||||||||||||| |||||||||||||||||||||| |||||||||||    
T  16537996 gaagtcaaaataaaatatgactaatcaaaaaggttcaactagcacaaggtgtg 16538048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 307 - 362
Target Start/End: Complemental strand, 26756211 - 26756157
Alignment:
Q  307 aaataaactactccttaatactcatacataataaaggggttccgccactagtcatt 362  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  26756211 aaataaactactccttaatacccatacataataaa-gggttccgccaccagtcatt 26756157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 8e-36; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 370 - 507
Target Start/End: Original strand, 44789810 - 44789948
Alignment:
Q  370 aaaactgtcaaacttaaaattgaaagcctnnnnnnncacaatcaaatactaaagtcttaacaaaaa-tgtcatttattcatcctttcctattcctaccct 468  Q
    ||||||||||||||| ||||||||||||        |||||||||| |||||||| |||||||||| ||||||||||| ||||||| ||||||||||||     
T  44789810 aaaactgtcaaacttgaaattgaaagccaaacaaaacacaatcaaacactaaagttttaacaaaaactgtcatttattgatcctttgctattcctaccca 44789909  T
Q  469 taaccaaacagtcaagggtgtgtactccacactgctaac 507  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  44789910 taaccaaacagtcaagggtgtgaactccacactgctaac 44789948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 406 - 507
Target Start/End: Complemental strand, 44614868 - 44614766
Alignment:
Q  406 cacaatcaaatactaaagtcttaacaaaaa-tgtcatttattcatcctttcctattcctacccttaaccaaacagtcaagggtgtgtactccacactgct 504  Q
    |||||||||| |||||||| |||||||||| ||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  44614868 cacaatcaaacactaaagttttaacaaaaactgtcatttattgatcctttgctattcctacccataaccaaacagtcaagggtgtgaactccacactgct 44614769  T
Q  505 aac 507  Q
    |||    
T  44614768 aac 44614766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 406 - 507
Target Start/End: Original strand, 44793701 - 44793803
Alignment:
Q  406 cacaatcaaatactaaagtcttaacaaaaa-tgtcatttattcatcctttcctattcctacccttaaccaaacagtcaagggtgtgtactccacactgct 504  Q
    |||||||||| |||||||| |||||||||| ||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||    
T  44793701 cacaatcaaacactaaagttttaacaaaaactgtcatttattgatcctttgctattcctacccataaccaaacagtcaagggtgtgaactccacactgct 44793800  T
Q  505 aac 507  Q
    |||    
T  44793801 aac 44793803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 694 - 824
Target Start/End: Complemental strand, 44614725 - 44614594
Alignment:
Q  694 atagattaattcaactatgaaaacaacggtgacatatattatgagattgatactgtctttgatgacagatt-ttgaacatagagaaatgcaatacaaatt 792  Q
    ||||||||| | |||||||||||||||  ||| ||||||||||||||||||| ||||||| |||  ||||| |||||||  |||||||||||||||||||    
T  44614725 atagattaacttaactatgaaaacaacaatgatatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaatt 44614626  T
Q  793 gtagaaaacctttagttacacatatatcaaca 824  Q
     ||||||  |||||||||||||||||||||||    
T  44614625 atagaaatgctttagttacacatatatcaaca 44614594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 694 - 824
Target Start/End: Original strand, 44793844 - 44793975
Alignment:
Q  694 atagattaattcaactatgaaaacaacggtgacatatattatgagattgatactgtctttgatgacagatt-ttgaacatagagaaatgcaatacaaatt 792  Q
    ||||||||| | |||||||||||||||  ||| ||||||||||||||||||| ||||||| |||  ||||| |||||||  |||||||||||||||||||    
T  44793844 atagattaacttaactatgaaaacaacaatgatatatattatgagattgatattgtctttaatggaagattattgaacagtgagaaatgcaatacaaatt 44793943  T
Q  793 gtagaaaacctttagttacacatatatcaaca 824  Q
     ||||||  |||||||||||||||||||||||    
T  44793944 atagaaatgctttagttacacatatatcaaca 44793975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 514 - 604
Target Start/End: Original strand, 44783525 - 44783614
Alignment:
Q  514 aatctaaattattctataacagcaaacaatgtaatcatcccatgctttaggaatacgagatcctgcaaaaataagaattaattttagtact 604  Q
    |||||| |||||||||||||||||| |||||||||| |||||| |  |||||| | |||||||||||||||||||||||||||||||||||    
T  44783525 aatctacattattctataacagcaagcaatgtaatcctcccatacagtaggaa-atgagatcctgcaaaaataagaattaattttagtact 44783614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 830 - 944
Target Start/End: Original strand, 44783806 - 44783921
Alignment:
Q  830 atggttaatgaatttcagcagttaataaagcaaccatccc-aaggctaaaagttttcatgattcggttaaaccataaagtgtgaagtaacaaagtaggaa 928  Q
    ||||| |||||||||||| ||||||||||||||| ||||| |||||||||||| || ||||||| |||||||||||||   | || |   |||||| |||    
T  44783806 atggtaaatgaatttcagtagttaataaagcaactatcccaaaggctaaaagtatttatgattcagttaaaccataaaaatttaaatggaaaagtaagaa 44783905  T
Q  929 agaacagaagtacctg 944  Q
    ||||||||||||||||    
T  44783906 agaacagaagtacctg 44783921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 652 - 720
Target Start/End: Original strand, 44783626 - 44783694
Alignment:
Q  652 aaaaaccagtaactaatcatttgatcaggacatgtgatatgtatagattaattcaactatgaaaacaac 720  Q
    |||||| |||||||||| |||| |||| ||||||||||||||||| ||||| | |||||||||||||||    
T  44783626 aaaaacaagtaactaataatttaatcaagacatgtgatatgtataaattaacttaactatgaaaacaac 44783694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 650 - 814
Target Start/End: Original strand, 11542418 - 11542579
Alignment:
Q  650 ataaaaaccagtaactaatcatttgat-caggacatgtgatatgtatagattaattcaactatgaaaacaacggtgacatatattatgagattgatactg 748  Q
    ||||||||  ||||||||||| || || |||||||||||| |||| |||||||| | |||     |||||| | ||| |||  ||||| |||||||| ||    
T  11542418 ataaaaacatgtaactaatcaatttattcaggacatgtgacatgtctagattaacttaac-----aaacaatgatgatataggttatgggattgatattg 11542512  T
Q  749 tctttgatgacagatt-ttgaacatagagaaatgcaatacaaattgtagaaaacctttagttacaca 814  Q
    ||||||||||||  || |||| ||  ||||||||||||||||||||| |||   |||||||||||||    
T  11542513 tctttgatgacatgttattgatcactgagaaatgcaatacaaattgttgaagtgctttagttacaca 11542579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 825 - 887
Target Start/End: Original strand, 11542609 - 11542671
Alignment:
Q  825 gtcacatggttaatgaatttcagcagttaataaagcaaccatcccaaggctaaaagttttcat 887  Q
    |||| ||| |||||||||||| | ||||||| ||||||| || |||||||||||||| |||||    
T  11542609 gtcatatgattaatgaatttcggtagttaattaagcaactataccaaggctaaaagtcttcat 11542671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 170 - 290
Target Start/End: Complemental strand, 199211 - 199090
Alignment:
Q  170 aagaagccaaaataaaatataactaatcaaaaagg-ttcaactaacacaaggtgtgtcnnnnnnnnccatcgaaaacaaatacaaagttattatcctgct 268  Q
    |||||||||||||||||||| |||||| ||||| | ||||||||  | ||||||||||        ||||||||||||| |||||||||| |||||||||    
T  199211 aagaagccaaaataaaatatgactaataaaaaatgattcaactagtataaggtgtgtcaagaaaaaccatcgaaaacaagtacaaagttaatatcctgct 199112  T
Q  269 gccataaagcccaacggcagac 290  Q
    |||||||||| |||||||||||    
T  199111 gccataaagctcaacggcagac 199090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 727 - 826
Target Start/End: Original strand, 27169 - 27269
Alignment:
Q  727 atatattatgagattgatactgtctttgatgacagatt-ttgaacatagagaaatgcaatacaaattgtagaaaacctttagttacacatatatcaacag 825  Q
    ||||||||| ||||||||| | |||||||||| ||||| || ||||  ||||||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  27169 atatattataagattgatattttctttgatgaaagattattaaacactgagaaatgcaatacaaattgtagaaatgctttagttacaaatatatcaacag 27268  T
Q  826 t 826  Q
    |    
T  27269 t 27269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 53; Significance: 6e-21; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 727 - 826
Target Start/End: Complemental strand, 171623 - 171523
Alignment:
Q  727 atatattatgagattgatactgtctttgatgacagatt-ttgaacatagagaaatgcaatacaaattgtagaaaacctttagttacacatatatcaacag 825  Q
    ||||||||| ||||||||| | |||||||||| ||||| || ||||  ||||||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  171623 atatattataagattgatattttctttgatgaaagattattaaacactgagaaatgcaatacaaattgtagaaatgctttagttacaaatatatcaacag 171524  T
Q  826 t 826  Q
    |    
T  171523 t 171523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 514 - 632
Target Start/End: Complemental strand, 26730405 - 26730285
Alignment:
Q  514 aatctaaattattctataacagcaaacaa-tgtaatcatcccatgctttaggaatacgagatcctgcaaaaataagaa-ttaattttagtacttcgaaat 611  Q
    |||||| ||||||||| ||||||||| || || ||||||||||| |   | ||||| |||||||||||||| ||| || |||| |||||||||| |||||    
T  26730405 aatctacattattctacaacagcaaaaaaatgcaatcatcccatacagaacgaataagagatcctgcaaaagtaaaaaattaaatttagtacttggaaat 26730306  T
Q  612 gtcatcaaatcagtgcaattt 632  Q
      ||||||| |||||||||||    
T  26730305 aacatcaaagcagtgcaattt 26730285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 274
Target Start/End: Original strand, 14165407 - 14165494
Alignment:
Q  188 ataactaatcaaaaa-ggttcaactaacacaaggtgtgtcnnnnnnnnccatcgaaaacaaatacaaagttattatcctgctgccata 274  Q
    ||||||||||||||| |||||||||||||||| || ||||         |||| |||||||||||||||||||||||||| |||||||    
T  14165407 ataactaatcaaaaatggttcaactaacacaaagtatgtcaagaaaaatcatcaaaaacaaatacaaagttattatcctggtgccata 14165494  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 226
Target Start/End: Complemental strand, 9421798 - 9421741
Alignment:
Q  170 aagaagccaaaataaaatataactaatcaaaa-aggttcaactaacacaaggtgtgtc 226  Q
    |||||||||||||||||||  |||||||||||  |||||| |||||||||||||||||    
T  9421798 aagaagccaaaataaaataatactaatcaaaagtggttcatctaacacaaggtgtgtc 9421741  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 11973566 - 11973516
Alignment:
Q  311 aaactactccttaatactcatacataataaaggggttccgccactagtcatt 362  Q
    |||||||||| |||||| ||||||||||||| |||||||||||| |||||||    
T  11973566 aaactactccctaatacccatacataataaa-gggttccgccaccagtcatt 11973516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 42052973 - 42052919
Alignment:
Q  170 aagaagccaaaataaaatataactaatcaaaaa-ggttcaactaacacaaggtgt 223  Q
    |||||||||||||||||||||| |||||||||| |||||| ||| || |||||||    
T  42052973 aagaagccaaaataaaatataattaatcaaaaatggttcatctagcataaggtgt 42052919  T

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