View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4675-Insertion-5 (Length: 635)

Name: NF4675-Insertion-5
Description: NF4675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4675-Insertion-5
NF4675-Insertion-5
[»] chr5 (1 HSPs)
chr5 (88-633)||(3976437-3976991)
[»] chr6 (4 HSPs)
chr6 (8-69)||(3745733-3745794)
chr6 (8-69)||(4663174-4663235)
chr6 (11-69)||(4746989-4747047)
chr6 (111-174)||(19755774-19755841)
[»] chr3 (6 HSPs)
chr3 (111-171)||(45252219-45252279)
chr3 (221-293)||(45252331-45252403)
chr3 (111-165)||(3107546-3107600)
chr3 (221-285)||(3107425-3107489)
chr3 (221-277)||(45251719-45251775)
chr3 (111-171)||(3113826-3113886)
[»] chr1 (1 HSPs)
chr1 (8-68)||(18941367-18941427)
[»] chr4 (4 HSPs)
chr4 (210-276)||(54245303-54245369)
chr4 (111-171)||(54244727-54244787)
chr4 (124-170)||(6521515-6521561)
chr4 (122-168)||(54245220-54245266)
[»] chr7 (2 HSPs)
chr7 (118-173)||(33376597-33376652)
chr7 (219-265)||(35135932-35135978)
[»] chr2 (1 HSPs)
chr2 (227-265)||(1744047-1744085)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 88 - 633
Target Start/End: Original strand, 3976437 - 3976991
Alignment:
Q  88 tcatcattgcgacaaaaccaggttcaactcgtttgcttgattcctgcaacatggttcaaaacaagggcctttgatgat--gatgataaagatnnnnnnnn 185  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||            
T  3976437 tcatcattacgacaaaaccaggttcaactcgtttgcttgattcctgcaacatggttcaaaacaagggtctttgatgatatgatgataaagataaaaaaaa 3976536  T
Q  186 --ttgggagaaaaagaatannnnnnngtcacaggtatcaatttgcttgattattataaattttattgggtattttgcacatacgtgcaaaatttcaaagg 283  Q
      ||||||| |||| ||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || ||    
T  3976537 aattgggagcaaaataatatttttttgtcacaggtatcaatttgcttgattattataaattttattgggcattttgcacataagtgcaaaattttaaggg 3976636  T
Q  284 attatttgcaattaaccgtaaaaattcagnnnnnnnnnnnnnnnnnnnnnnngagaaattttgtatct-----gacacatgtcggatagacagtttaatg 378  Q
     ||||||||||||||||| |||| |||||                       | ||||||||||||||     |||||||| |  |||||||||||||||    
T  3976637 gttatttgcaattaaccgcaaaacttcagattttttttttgaaaaaatgtttgggaaattttgtatctcaggtgacacatgcctaatagacagtttaatg 3976736  T
Q  379 tcacgtcatctgactaaaggaaattgacagaggggtgaaataattaacggaggggggaaattaatataccaacactatgcaatttttgagaggaaattaa 478  Q
    | ||||||| ||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| ||||||| | ||| ||||||| |||||| ||||||    
T  3976737 tgacgtcatttgactaaagaaaattgacagaggggtgaaataattaatggaggagggaaattaacataccaatattatacaattttcgagaggtaattaa 3976836  T
Q  479 agtttcgtcaacttaagagataattatttcatgaggtactcgcctatttacttnnnnnnncgttatagaatagacggcagtattaattggaaaagtaggg 578  Q
    ||||| || || |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||    
T  3976837 agttttgttaagttaagagataattatttcatgaggtactcgcctatttacttaaaaaaacgttatagaatagacggcggtattaattggaaaagtaggg 3976936  T
Q  579 tttaatcttccatcaaattgaaaccccgtgcctctgtctctgccttcctccaaat 633  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  3976937 tttaatcttccatcaaattgaaaccccgtgcctctgtctccgccttcctgcaaat 3976991  T

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Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 3745733 - 3745794
Alignment:
Q  8 atagttaatcgtcaaatattgagcattatgatttatgagtttgatcttcttttgtttctcaa 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3745733 atagttaatcgtcaaatattgagcattatgatttatgagtttgatcttcttttctttctcaa 3745794  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 4663174 - 4663235
Alignment:
Q  8 atagttaatcgtcaaatattgagcattatgatttatgagtttgatcttcttttgtttctcaa 69  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  4663174 atagttaatcgtcaaatattgagcattacgatttatgagtttgatcttcttttctttctcaa 4663235  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 4746989 - 4747047
Alignment:
Q  11 gttaatcgtcaaatattgagcattatgatttatgagtttgatcttcttttgtttctcaa 69  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||||||| ||||||||    
T  4746989 gttaatcgtcaaatattgagcattacaattaatgagtttgatcttcttttctttctcaa 4747047  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 19755774 - 19755841
Alignment:
Q  111 tcaactcgtttgcttgattcctgcaacatggttcaaaacaagggcctt----tgatgatgatgataaa 174  Q
    |||||| ||||||||||||||||||| ||  |||||||||||||||||    ||||||||||||||||    
T  19755774 tcaacttgtttgcttgattcctgcaatataattcaaaacaagggccttttggtgatgatgatgataaa 19755841  T

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Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 45252219 - 45252279
Alignment:
Q  111 tcaactcgtttgcttgattcctgcaacatggttcaaaacaagggcctttgatgatgatgat 171  Q
    |||||| ||||||||||||||| || ||||||| |||||||||||||||||||||||||||    
T  45252219 tcaacttgtttgcttgattccttcatcatggtttaaaacaagggcctttgatgatgatgat 45252279  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 221 - 293
Target Start/End: Original strand, 45252331 - 45252403
Alignment:
Q  221 caatttgcttgattattataaattttattgggtattttgcacatacgtgcaaaatttcaaaggattatttgca 293  Q
    ||||||||||||||||||||||||||||  | ||||||||||||| || ||||||||||||||  ||||||||    
T  45252331 caatttgcttgattattataaattttatgagatattttgcacataagtacaaaatttcaaagggatatttgca 45252403  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 3107600 - 3107546
Alignment:
Q  111 tcaactcgtttgcttgattcctgcaacatggttcaaaacaagggcctttgatgat 165  Q
    |||||| |||||||||||||||||||||||||||||||||||  |||||| ||||    
T  3107600 tcaacttgtttgcttgattcctgcaacatggttcaaaacaagaacctttgttgat 3107546  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 221 - 285
Target Start/End: Complemental strand, 3107489 - 3107425
Alignment:
Q  221 caatttgcttgattattataaattttattgggtattttgcacatacgtgcaaaatttcaaaggat 285  Q
    |||||||||||||||||||||| || |  ||| |||||| ||||| |||||||||||||||||||    
T  3107489 caatttgcttgattattataaacttcagggggcattttgtacataagtgcaaaatttcaaaggat 3107425  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 221 - 277
Target Start/End: Complemental strand, 45251775 - 45251719
Alignment:
Q  221 caatttgcttgattattataaattttattgggtattttgcacatacgtgcaaaattt 277  Q
    |||||||||||||| ||||||||||||  ||| |||||||||||| |||||||||||    
T  45251775 caatttgcttgattgttataaattttagggggcattttgcacataagtgcaaaattt 45251719  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 3113826 - 3113886
Alignment:
Q  111 tcaactcgtttgcttgattcctgcaacatggttcaaaacaagggcctttgatgatgatgat 171  Q
    |||||| |||||||||||||| |||||||||||||||| |||   ||||||| ||||||||    
T  3113826 tcaacttgtttgcttgattccagcaacatggttcaaaataagaatctttgataatgatgat 3113886  T

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Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 18941367 - 18941427
Alignment:
Q  8 atagttaatcgtcaaatattgagcattatgatttatgagtttgatcttcttttgtttctca 68  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||| ||| |||||||    
T  18941367 atagttaatcatcaaatactgagcattatgatttatgagtttgatcttcctttctttctca 18941427  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 276
Target Start/End: Original strand, 54245303 - 54245369
Alignment:
Q  210 gtcacaggtatcaatttgcttgattattataaattttattgggtattttgcacatacgtgcaaaatt 276  Q
    |||||||| | |||||||||||||||||||||||||||   ||||||||||||||| ||||||||||    
T  54245303 gtcacagggaccaatttgcttgattattataaattttaagaggtattttgcacataagtgcaaaatt 54245369  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 54244787 - 54244727
Alignment:
Q  111 tcaactcgtttgcttgattcctgcaacatggttcaaaacaagggcctttgatgatgatgat 171  Q
    |||||| ||||||||||||||| |||||||||| |||| |||||| |||||||||||||||    
T  54244787 tcaacttgtttgcttgattccttcaacatggtttaaaataagggcttttgatgatgatgat 54244727  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 170
Target Start/End: Complemental strand, 6521561 - 6521515
Alignment:
Q  124 ttgattcctgcaacatggttcaaaacaagggcctttgatgatgatga 170  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||    
T  6521561 ttgatttctgcaacatggttcaaaacaagagcctttgatgatgatga 6521515  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 54245220 - 54245266
Alignment:
Q  122 gcttgattcctgcaacatggttcaaaacaagggcctttgatgatgat 168  Q
    ||||||||| | |||||||||| ||||||||||||||||||||||||    
T  54245220 gcttgattctttcaacatggtttaaaacaagggcctttgatgatgat 54245266  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 33376652 - 33376597
Alignment:
Q  118 gtttgcttgattcctgcaacatggttcaaaacaagggcctttgatgatgatgataa 173  Q
    ||||| |||||||||||||||||| |||||| || |||||||||||||||||||||    
T  33376652 gtttgtttgattcctgcaacatgggtcaaaataaaggcctttgatgatgatgataa 33376597  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 219 - 265
Target Start/End: Complemental strand, 35135978 - 35135932
Alignment:
Q  219 atcaatttgcttgattattataaattttattgggtattttgcacata 265  Q
    ||||||||||||||||||| | |||||||| | ||||||||||||||    
T  35135978 atcaatttgcttgattattgtcaattttatagagtattttgcacata 35135932  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 1744047 - 1744085
Alignment:
Q  227 gcttgattattataaattttattgggtattttgcacata 265  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  1744047 gcttgattattatcaattttatggggtattttgcacata 1744085  T

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