View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4675-Insertion-6 (Length: 616)
Name: NF4675-Insertion-6
Description: NF4675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4675-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 7 - 616
Target Start/End: Original strand, 43186071 - 43186683
Alignment:
| Q |
7 |
aaaacctacatcgcagagcggaaaatggttgctaactcaacatttcttcagatgttatgaagctaaaacaaccactaacatcttagcaattggttttttc |
106 |
Q |
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| T |
43186071 |
aaaacctacatcgcagagtggaaaatggttgctaagtcaacatttcttcagatgttatgaagctgaaacaaccactaacatcttagcaattggttttttc |
43186170 |
T |
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| Q |
107 |
aattggtaaatccaacttaagccaaaatgaatggtttaaaaataaccactgttgtcgattgcagatcgcggagaagagtggtttgcttgaaattggctat |
206 |
Q |
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| T |
43186171 |
aattggtaaatccaacttaagccaaaatgaatggtttaaaaataaccactgttgtcgattgcagatcgcggagaagagtggtttgcttgaaattggctat |
43186270 |
T |
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| Q |
207 |
gctacgagctat--acagctgctatttaacaacaatgatgataaaaactgataattttcttcatcataaacactaaaataatcttaaaggatacaccgga |
304 |
Q |
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|||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186271 |
gctacgagctatgtacagctgctatttaacaacaatgatgattacaactgataattttcttcatcataaacactaaaataatcttaaaggatacaccgga |
43186370 |
T |
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| Q |
305 |
cctctgcatggggggcggaaggcagctgctccgctatcacggccactaccgcggctactatcgtctattggcaacagatactcgatgtagcaaaccaatt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43186371 |
cctctgcatggggggcggaaggcagctgctccgctatcacagccaccaccgcggctactatcgtctattggcaacagatactcaatgtagcaaaccaatt |
43186470 |
T |
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| Q |
405 |
gtgtagccttctgcttgcatgctacccatccctcctaagctttgacaacttcacactatgacaattaggccccacttggatctttggacaatgccacttg |
504 |
Q |
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| T |
43186471 |
tggtagcctcctgcttgcatgctacccatccctcctaagctttgacaacttcacactatgacaattaggccccacttgcatctttggacaatgccacttg |
43186570 |
T |
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| Q |
505 |
aatcttaac-tataggaatccacaacactcattttcattccatcttcgaaattcactctgactcgttcttcataacataaattcattcattttcattatt |
603 |
Q |
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| T |
43186571 |
aatcttaacttttaggaatccacaacactcattttcattccatcttcgaaattcactctgactcgttcttcataacataaattcattaattttcattatt |
43186670 |
T |
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| Q |
604 |
catcgccgaaatt |
616 |
Q |
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| T |
43186671 |
catcgcagaaatt |
43186683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 508 - 564
Target Start/End: Original strand, 23609323 - 23609379
Alignment:
| Q |
508 |
cttaactataggaatccacaacactcattttcattccatcttcgaaattcactctga |
564 |
Q |
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| T |
23609323 |
cttaactgtaggattccacaacactcattttcattccaccagtgaaattcactctga |
23609379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 516 - 576
Target Start/End: Original strand, 23622784 - 23622844
Alignment:
| Q |
516 |
taggaatccacaacactcattttcattccatcttcgaaattcactctgactcgttcttcat |
576 |
Q |
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|||||||||||| ||||||||||||||||| | ||||||| ||||||| || |||||||| |
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| T |
23622784 |
taggaatccacatcactcattttcattccaccaccgaaatttactctgaatcattcttcat |
23622844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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