View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4675-Insertion-7 (Length: 432)
Name: NF4675-Insertion-7
Description: NF4675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4675-Insertion-7 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 8 - 432
Target Start/End: Complemental strand, 6284357 - 6283933
Alignment:
| Q |
8 |
caagctccttctctcaaagtatctgtaaccatgaaaagattctcacagaatctcctctttgcaattatatcatatttggaatagatataatggcaaaaga |
107 |
Q |
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| T |
6284357 |
caagctccttctctcaaagtatctgtaaccatcaaaagattctcacagaatctcctctttgcaattatatcatatttggaatagatataatggcaaaaga |
6284258 |
T |
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| Q |
108 |
acatttttaaaagaatcctcacaccaagcacaccccgaaaaaaccctcccacacgaaagatatcaaccttttgttggcgcaccaactagttaatcgtttt |
207 |
Q |
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| T |
6284257 |
acatttttaaaagaatcctcactccaagcacaccccgacaaaaccctcccacgcgaaagatatcaaccttttgttggcgcaccaactagttaatcatttt |
6284158 |
T |
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| Q |
208 |
ccttttcgatcttccccaagcctctcacattataaatcaacacaattatttaccactgcttgctttctcccttcttcctttattcaactcatcaactttt |
307 |
Q |
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| T |
6284157 |
ccttttcgatcttccccaagcttctcacattataaatcaatacaatcattgaccactgcttgctttctcctttcttcctttattcaactcatcaacttct |
6284058 |
T |
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| Q |
308 |
tcatgttctaccgacttcttaagtattgtttcatcctctatattaaaataaattttgtcattcctttgtcaacgaaaaatccctaccgcatccaactatt |
407 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| |
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| T |
6284057 |
tcaagttctaccgacttcttaagtattgtttcatcctctatattaaaataaattttgtcattcctttgtaagcgaaaaatccctactgcatccaactatt |
6283958 |
T |
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| Q |
408 |
tcctacatactctccctccacattt |
432 |
Q |
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| T |
6283957 |
tcctacctactctccctccacattt |
6283933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 173 - 318
Target Start/End: Complemental strand, 6305719 - 6305577
Alignment:
| Q |
173 |
accttttgttggcgcaccaactagttaatcgttttccttttcgatcttccccaagcctctcacattataaatcaacacaattatttaccactgcttgctt |
272 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||||||||||||||||| ||| | |||| |||||| |
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| T |
6305719 |
acctttttttggcgcaccaactagttaatcattttccttttcgatct-ctccaagcctctca--ttataaatcaacacaatcattgatcactagttgctt |
6305623 |
T |
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| Q |
273 |
tctcccttcttcctttattcaactcatcaactttttcatgttctac |
318 |
Q |
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| T |
6305622 |
tctcccttcttcctttattcaacacatctgcttcttcatgttctac |
6305577 |
T |
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