View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4675-Insertion-9 (Length: 168)
Name: NF4675-Insertion-9
Description: NF4675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4675-Insertion-9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 107 - 168
Target Start/End: Complemental strand, 22234521 - 22234460
Alignment:
| Q |
107 |
acacagaaacaaaaaccttttacacattccttatggcacaatgcattcttctcaatctcaat |
168 |
Q |
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| T |
22234521 |
acacagaaacaaaaacctttttcacattccttatggcacaatgcattcttctcaacctcaat |
22234460 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 22234621 - 22234592
Alignment:
| Q |
7 |
aagaggaccagcacaagcatgccataattc |
36 |
Q |
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| T |
22234621 |
aagaggaccagcacaagcatgccataattc |
22234592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 36
Target Start/End: Original strand, 7778173 - 7778204
Alignment:
| Q |
5 |
acaagaggaccagcacaagcatgccataattc |
36 |
Q |
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| T |
7778173 |
acaagaggaccagcacaagcatgccataattc |
7778204 |
T |
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