View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4675_high_13 (Length: 218)
Name: NF4675_high_13
Description: NF4675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4675_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 22234775 - 22234616
Alignment:
| Q |
21 |
caagtagttggacattgacaaccctgcaaaagatctgaggctgaagatcatagtttggtatctccaattgcttaaaaggagaaaaagaagcaaattgttc |
120 |
Q |
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| T |
22234775 |
caagtagttggacattgacaaccctgcaaaagatctgaggctgaagatcatagtttggtatctccaattgcttaaaaggagaaaaagaagcaaattgttc |
22234676 |
T |
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| Q |
121 |
caagtgaccttgtggaaaatataccacaacatttcctttcataggaagtgaggtaagagg |
180 |
Q |
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| T |
22234675 |
caagtgaccttgtggaaaatacaccacaacatttcctttcttaggaagtgaggtaagagg |
22234616 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 39984249 - 39984321
Alignment:
| Q |
99 |
gagaaaaagaagcaaattgttccaagtgaccttgtggaaaatataccacaacatttcctttcataggaagtga |
171 |
Q |
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| T |
39984249 |
gagacaaagatgcaacttgttccaaatgaccttgtggaaaataaactacaacattccctttctttggaagtga |
39984321 |
T |
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