View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4675_high_15 (Length: 205)
Name: NF4675_high_15
Description: NF4675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4675_high_15 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 32576222 - 32576426
Alignment:
| Q |
1 |
ttatatccatttctaccaacctctattcagcactaccatctttctccattgctgtggctttaattcatatgcaacgtcatactcttcggccaaacagtgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32576222 |
ttatatccatttctaccaacctctattcagcactaccatctttctccattgctgtggctttaattcatatgcaaggtcatactcttcggccaaacagtgc |
32576321 |
T |
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| Q |
101 |
acaagagctgtcatagtacaagtaaaaacactgagtttatttacagccattaatctcttactgtattataaatgcaactcaagagaagaatctggttttt |
200 |
Q |
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| T |
32576322 |
acaagagctgtcatagtacaagtaaaaacactgagtttatttacagccattaatctcttactgtattataaatgcaactcaagagaagaatctggttttt |
32576421 |
T |
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| Q |
201 |
taaat |
205 |
Q |
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||||| |
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| T |
32576422 |
taaat |
32576426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 32570913 - 32571112
Alignment:
| Q |
1 |
ttatatccatttctaccaacctctattcagcactaccatctttctccattgctgtggctttaattcatatgcaacgtcatactcttcggccaaacagtgc |
100 |
Q |
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|||||| |||||| |||||||||| ||| ||||||| ||||||||||| ||||||||| |||||||||||||| ||| || ||||||||||||||||| |
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| T |
32570913 |
ttatattcatttcaaccaacctct-ttctgcactacagtctttctccatagctgtggctataattcatatgcaaagtcccacccttcggccaaacagtgc |
32571011 |
T |
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| Q |
101 |
acaagagctgtcatagtacaagta---aaaacactgagtttatttacagccattaatctcttactgtattataaatgcaactcaagagaagaatctggtt |
197 |
Q |
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||| ||||||||||||||||| || ||||||| |||| |||||||||||| |||||||||||| |||||||||||||| |||||||| ||||||| |
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| T |
32571012 |
acaggagctgtcatagtacaactaattaaaacac--agttaatttacagccatagttctcttactgtaatataaatgcaactcgagagaagagtctggtt |
32571109 |
T |
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