View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4675_high_4 (Length: 411)
Name: NF4675_high_4
Description: NF4675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4675_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 28 - 401
Target Start/End: Original strand, 635843 - 636213
Alignment:
| Q |
28 |
aaacagcatatgccaactgattagaacaacatcctaaattgtttaagttgacattttgatcatgaagtgaccaatagactacaataaccaattagaacat |
127 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
635843 |
aaacagcctatgccaactgattagaacaacatcctaaattgtttaagttgacattttgatcatgaagtgaccaatagactacaataaccaattagaacat |
635942 |
T |
|
| Q |
128 |
gcttctttcaatttttctatgaagcacatgttgcctcttcctttattgtcatcaatatgtaatagagatcagtcaaatttcgtgaagttcag--nnnnnn |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
635943 |
gcttctttcaatttttctatgaagcacatgttgcctcttcctttactgtcatcaatatgtaatagagatcagtcaaatttcgtgaagttcagaaaaaacg |
636042 |
T |
|
| Q |
226 |
nnnnnnnnnnctgcataattacttttttgtctcaatcttcctactaggatgttaaattagtagtgttgcagcatccttgaaaaatcttgcctttggatgt |
325 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
636043 |
aaaaaaaaaactgcataattacttttttgtctctatcttcctactaggatgttaaattagtagtgttgcagcatccttgaaaaatcttgcctttggatgt |
636142 |
T |
|
| Q |
326 |
ggagcaagtgaagtaatttaatgagttgtacaatgctggtgtgagttaaaacttgagaacctaaagatgtgatgat |
401 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
636143 |
ggagcaagtgaagtactttaatgag-----caatgctggtgtgagttaaaacttgagaagctaaagatgtgatgat |
636213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University