View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4675_high_9 (Length: 248)
Name: NF4675_high_9
Description: NF4675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4675_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 32576111 - 32575926
Alignment:
| Q |
1 |
tttagttagaaatcaaagaaagaaatacaagattatagatgcatacatttcaagaatataacaaaattggcttaaactaatgatccaaaaaataacatga |
100 |
Q |
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| T |
32576111 |
tttagttagaaatcaaagaaagaaatacaagattatagatgcatagatttcaagaatataacaaaattcgcttaagctaatgatcca-aaaataacacga |
32576013 |
T |
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| Q |
101 |
gatcactaacattgtttaaagataatagaggaagaagaagaatat--ataaacaaacctgagtaactaaatcaaccgactcacacga |
185 |
Q |
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| T |
32576012 |
gatcactaatattgtttaaagataatagacgaagaagaagaatatacataaacaaacctgagtaactaaatcaaccgactcacacga |
32575926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 32612894 - 32612752
Alignment:
| Q |
1 |
tttagttagaaatcaaagaaagaaatacaagattatagatgcatacatttcaagaatataacaaaattggcttaaactaatgatccaaaaaataacatga |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32612894 |
tttagttagaaatcaaagaaagaaatacaaaattatagatgcatacatttcaagaatataacaaaattggcttaaactaatgatcca-aaaataacatga |
32612796 |
T |
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| Q |
101 |
gatcactaacattgtttaaagataatagaggaagaagaagaata |
144 |
Q |
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| T |
32612795 |
gatcactaacattgtttaaagataatagacgaagaagaagaata |
32612752 |
T |
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