View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4675_low_3 (Length: 440)
Name: NF4675_low_3
Description: NF4675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4675_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 331 - 429
Target Start/End: Original strand, 10285707 - 10285805
Alignment:
| Q |
331 |
catgtaagtcagttgtccccaattataacaatgcagatccgtccctgactatacaccaagattccatcacgtgacatgatacgtatccataagtattca |
429 |
Q |
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| T |
10285707 |
catgtaagtcagttgtccccaattataacaatgcagatccgtccctgactatacaccaagattccatcacgtgacatgatacgtatccgtaagtattca |
10285805 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 7715453 - 7715424
Alignment:
| Q |
37 |
ttctattttaaactttttatcaaatgtctt |
66 |
Q |
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| T |
7715453 |
ttctattttaaactttttatcaaatgtctt |
7715424 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 41354399 - 41354448
Alignment:
| Q |
37 |
ttctattttaaactttttatcaaatgtctttaagacacttgttagcattt |
86 |
Q |
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| T |
41354399 |
ttcttttttaaatttcttatcaaatgtctttaagacacttattagtattt |
41354448 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 44529274 - 44529222
Alignment:
| Q |
34 |
aacttctattttaaactttttatcaaatgtctttaagacacttgttagcatttc |
87 |
Q |
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| T |
44529274 |
aacttccactttaaacttcttatcaaatgtcct-aagacacttgttagcatttc |
44529222 |
T |
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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 3519602 - 3519650
Alignment:
| Q |
38 |
tctattttaaactttttatcaaatgtctttaagacacttgttagcattt |
86 |
Q |
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| T |
3519602 |
tctactttaaactttttatcaaatgtcttgagaacacttgttagtattt |
3519650 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 15808771 - 15808811
Alignment:
| Q |
43 |
tttaaactttttatcaaatgtctttaagacacttgttagca |
83 |
Q |
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| T |
15808771 |
tttaaactttttatcaaatgttcttaggacacttgttagca |
15808811 |
T |
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