View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4675_low_8 (Length: 269)
Name: NF4675_low_8
Description: NF4675
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4675_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 52725318 - 52725570
Alignment:
| Q |
18 |
agtgtgatgctatattttttgtatttagtatttcgaaaattgcatattaagtgatatttgtgtcaaaaggagaggatggcgannnnnnn-attaatttac |
116 |
Q |
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| T |
52725318 |
agtgtgatgctatattttttgtatttagtatttcgaaaattgcatattaagtgatatttgtgtcaaaaggagaggatggcgattttttttattaatttac |
52725417 |
T |
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| Q |
117 |
aaaatagttgaattaaaatgtaatttatggtattaattaagttttgagaagagttgcttcgcttaagatgtttctattaaattccatatgatcaaaattg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52725418 |
aaaatagttgaattaaaatgtaatttatggtattaattaagttttgagaagagttgcttcgcttaagatgtttctattaaattccatatgatcaaaattg |
52725517 |
T |
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| Q |
217 |
agtcaaatgcatcattttccttactctcttcacaatttcttgttttttgacct |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52725518 |
agtcaaatgcatcattttccttactctcttcacaatttcttgttttttgacct |
52725570 |
T |
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