View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4676-Insertion-1 (Length: 1045)
Name: NF4676-Insertion-1
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676-Insertion-1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 902; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 902; E-Value: 0
Query Start/End: Original strand, 8 - 1033
Target Start/End: Original strand, 35520339 - 35521359
Alignment:
| Q |
8 |
tccatctccctctaacaaccattttatttcatatgatctttattttctactgcaaaccaaaatatatcgcattcaaccatcaacttcatctccatgttct |
107 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35520339 |
tccatctccctctaacaaccattgtatttcatatgatctttattttctactgcaaaccaaaatatatcgcattcaaccatcaacttcatctccatgttct |
35520438 |
T |
|
| Q |
108 |
aataaagggtggctcattagagtttttctgtcaagttcttccaaactttatctccttgatttcttcactaaccagagactccgaactatggagactataa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35520439 |
aataaagggtggctcattagagtttttctgtcaagttcttccaaactttatctccttgatctcttcactaaccagagactccgaactatggagactataa |
35520538 |
T |
|
| Q |
208 |
acaaagttttgaatttgatgaactttcgagttgtggagttgtttgaactatatactcctagtaatcttaaaggtgaaattgattttcattatttttgcag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35520539 |
acaaagttttgaatttgatgaactttcgagttgtggagttgtttgaactatatactcctagtaatcttaaaggtgaaattgattttcattatttttgcag |
35520638 |
T |
|
| Q |
308 |
cattcgcaaagtaatattttcttccattgagggtcattgcatggtctttgcactgtattcgggtaaagcggtgatagtttccaatattgaagaaaataca |
407 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35520639 |
cattcgcaaagtaatcttttcttccattgagggtcattgtatggtctttgcactgtattcaggtaaagcggtgatagtttccaacattgaagaaaataca |
35520738 |
T |
|
| Q |
408 |
tataccatgttagaggacgatgatggagaaacccattgttttgatgatataatactttataagggacaactttatgttgtggataaaatgggaacaatat |
507 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35520739 |
tataccatgttagaggacgatggtggagaaacccattgttttgatgatatgatactttacaagggccaactttatgttgtggataaaatgggaacaatat |
35520838 |
T |
|
| Q |
508 |
tctggttcaatgctttgtctttcaagttggttcagttttcacctaaaaacttgtactgttgtgaagaaaatgggcatataagggtgaatgcttgtgaaaa |
607 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35520839 |
tctggttccatgctttgtctttcaagttggttcagttttcacctaaaaacttgtactgttgtgaagaaaatgggcatataagggtgaatgcttgcgaaaa |
35520938 |
T |
|
| Q |
608 |
caaaaagaaattagtagagtatgatggaagtctctatgtggttgacctgtatattaatgatgaaagatattacaaatgggggttactatttgaaggatgt |
707 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35520939 |
caagaagaaattagtagagtatgatggaagtctctatgtggttgacctgtatattaatgatgaaagatattacaaat-ggggttactatttgaaggatgt |
35521037 |
T |
|
| Q |
708 |
ttttgtggaagtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttgggtgatgtttcatttgttttgagtaaagactcaaacttt |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35521038 |
ttttgtggaagtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttgggtgatgtttcatttgttttgagtaaagactcaaacttt |
35521137 |
T |
|
| Q |
808 |
gcattgttagctcaagattattatggatttgaaggaaattgcatctatttctattttgatcacaaggcttcttgtttcaacttggaagaatttagagact |
907 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35521138 |
gcattgttagctcaagattattatggatttgaaggaaattgcatctatttctattttgatcacaaggcttcttgtttcaactt-gaagaatttagagact |
35521236 |
T |
|
| Q |
908 |
aaggttgctgacannnnnnngggccttgtccaactttgttccatcctgtgaccaattaaatttgtaggtatagtaatgcacataaatatgatacatggtt |
1007 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35521237 |
aaggttgctgacatttttt--ggccttgtccaactttgttccatcctgtgaccaatt-aatttgtaagtatagtaatgcacataaatatgatacatggtt |
35521333 |
T |
|
| Q |
1008 |
ttaggtgtc-tgtggtggtgacttgtc |
1033 |
Q |
| |
|
||| ||||| ||||||||||||||||| |
|
|
| T |
35521334 |
tta-gtgtcttgtggtggtgacttgtc |
35521359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 765 - 851
Target Start/End: Complemental strand, 9514823 - 9514737
Alignment:
| Q |
765 |
tttgggtgatgtttcatttgttttgagtaaagactcaaactttgcattgttagctcaagattattatggatttgaaggaaattgcat |
851 |
Q |
| |
|
|||||||||| ||| ||| ||||| ||||||||||||||||| |||| | | || ||||||| ||||||||||| |||||||||| |
|
|
| T |
9514823 |
tttgggtgattattcgtttcttttgggtaaagactcaaacttttcattatcaactaaagattaccatggatttgaaagaaattgcat |
9514737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 313 - 996
Target Start/End: Complemental strand, 38813721 - 38813043
Alignment:
| Q |
313 |
gcaaagtaatattttcttccattgagggtcattgcatggtctttgcactgtattcgggtaaagcggtgatagtttccaatattgaagaaaatacatatac |
412 |
Q |
| |
|
|||||||||| || | ||| |||||||||| ||||||||||||||||||| || | ||||| | ||| ||||||||||||| |||||| | ||| |
|
|
| T |
38813721 |
gcaaagtaatcttgttttctattgagggtcgttgcatggtctttgcactgcataatgataaagagttgactgtttccaatattggagaaaaggaaaatat |
38813622 |
T |
|
| Q |
413 |
catgttagaggacgatgatggagaaacccattgttttgatgatataatactttataagggacaactttatgttgtggataaaatgggaacaatattctgg |
512 |
Q |
| |
|
||||||| | || ||| | |||||| | | | ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38813621 |
catgttaaatgatgattgtagagaaaacaaatattttgatgatataatacattacaagggacaactttatgttgtggataaaatgggaacaattttctgg |
38813522 |
T |
|
| Q |
513 |
ttcaatgctttgtctttcaagttggttcagttttcacctaaaaacttgtactgttgtgaagaaaatgggcatataagggtgaatgcttgtgaaaacaaaa |
612 |
Q |
| |
|
|||||||| | || || ||||||||||| |||||||| |||||| ||||| ||||| |||||| ||||||||||||||||| || |||||| | |
|
|
| T |
38813521 |
atcaatgctctttccttgaagttggttcaattttcaccaaaaaacatgtaccattgtgctgaaaataggcatataagggtgaattctaacataaacaaga |
38813422 |
T |
|
| Q |
613 |
agaaattagtagagtatgatggaagtctctatgtggttgacctgtatattaatgatgaaagatattacaaatgggggttactatttgaaggatgtttttg |
712 |
Q |
| |
|
|| |||||||||||||||||||| |||| ||||||||||| | ||||| ||||||||||| ||||||||| |||| ||||| ||||||| ||||||| |
|
|
| T |
38813421 |
agcaattagtagagtatgatggaggtctatatgtggttgatttatatatcaatgatgaaaggtattacaaaagggg-ttacttcttgaaggccgtttttg |
38813323 |
T |
|
| Q |
713 |
tggaagtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttgggtgatgtttcatttgttttgagtaaagactcaaactttgcatt |
812 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||| |||||||| |
|
|
| T |
38813322 |
tggaagtttataagcttgatcaagaatggggtaaatggttaaaagtaaaagatttgggtgatgtttcgtttgttttggataaagacacaaattttgcatt |
38813223 |
T |
|
| Q |
813 |
gttagctcaagattattatggatttgaaggaaattgcatctatttctattttgatcacaaggcttcttgtttcaacttggaagaatttagagactaaggt |
912 |
Q |
| |
|
||| |||| |||||| ||||| | ||||| ||| |||||||| ||||||| ||| || ||| |||||||||||||| ||||| ||||||| |||| |
|
|
| T |
38813222 |
gttggctcgagattactatgggtgtgaagaaaactgcatctacttctattatgaaagcagggcatcttgtttcaactt-gaagagtttagagtctaaacc |
38813124 |
T |
|
| Q |
913 |
tgctgacannnnnnngggccttgtccaactttgttccatcctgtgaccaattaaatttgtaggtatagtaatgcacataaatat |
996 |
Q |
| |
|
|||||||| || | ||||||||||||||||||| |||| ||||| |||||||| ||||| | |||||||||||||| |
|
|
| T |
38813123 |
tgctgacaaatttt--ggattggtccaactttgttccatccagtgatcaatt-aatttgtaagtataattatgcacataaatat |
38813043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 446 - 850
Target Start/End: Complemental strand, 38825481 - 38825084
Alignment:
| Q |
446 |
ttttgatgatataatactttataagggacaactttatgttgtggataaaatgggaacaatattctggttcaat---gctttgtctttcaagttggttcag |
542 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||| | ||| ||||| || || |||||||||||| |
|
|
| T |
38825481 |
ttttgatgatataatactttacaaggga--------tgttgtggataaaatgggaacaattttctggataaataatgctttatccttaaagttggttcag |
38825390 |
T |
|
| Q |
543 |
ttttcacctaaaaacttgtactgttgtgaagaaaatgggcatataagggtgaatgcttgtgaaaacaaaaagaaattagtagagtatgatggaagtctct |
642 |
Q |
| |
|
|||||||| |||||||| || ||||| ||||| | ||||| || |||| | || | |||| || |||||||||||| |||||||| ||||| |
|
|
| T |
38825389 |
ttttcaccaaaaaactt---cttttgtggtgaaaagagtaatatatggaagaatcatgttgcatacaataaacaattagtagagtttgatggaaatctct |
38825293 |
T |
|
| Q |
643 |
atgtggttgacctgtatattaatgatgaaagatattacaaatgggggttactatttgaaggatgtttttgtggaagtttataagcttgatcaagaatggg |
742 |
Q |
| |
|
||||||||| |||||||| | |||||||| | |||||||| ||| | ||| ||||||| | || |||| |||| |||||||||||||||||||||| |
|
|
| T |
38825292 |
gtgtggttgatatgtatattgacgatgaaaggttttacaaattggg-tcacttcttgaaggctattcgtgtgaaagtatataagcttgatcaagaatggg |
38825194 |
T |
|
| Q |
743 |
gtaaatggttaaaagtaaaagatttgggtgat--gtttcatttgttttgagtaaagactcaaactttgcattgttagctcaagattattatggatttgaa |
840 |
Q |
| |
|
||||||||||| | |||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| |||| ||||||||| |||| |||| |
|
|
| T |
38825193 |
gtaaatggttatatgtaaaagatttgggtgatatgtttcgtttgttttgggtaaagactcaaactttgcattgttggctcgagattattacggatgtgaa |
38825094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 446 - 685
Target Start/End: Complemental strand, 38810903 - 38810664
Alignment:
| Q |
446 |
ttttgatgatataatactttataagggacaactttatgttgtggataaaatgggaacaatattctggttcaatgctttgtctttcaagttggttcagttt |
545 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||| ||||| | | ||||||| |||| | | ||||||||||| || ||||||||||| ||| |
|
|
| T |
38810903 |
tttttatgatataatactttataatggacaactttatgttatggatgataaatgaacaattttctagataaatgctttgtccttgaagttggttcaattt |
38810804 |
T |
|
| Q |
546 |
tcacctaaaaacttgtactgttgtgaagaaaatgggcatataagggtgaatgcttgtgaaaacaaaaagaaattagtagagtatgatggaagtctctatg |
645 |
Q |
| |
|
||||| |||||||||| ||||||||| |||| |||||||||||||||| | | ||| || ||||||||||||||||| ||| |||||| |||| |
|
|
| T |
38810803 |
tcaccaaaaaacttgtcctgttgtgacaaaaagaggcatataagggtgaactgtgatacaaaaaacaagaaattagtagagtacaatgaaagtctttatg |
38810704 |
T |
|
| Q |
646 |
tggttgacctgtatattaatgatgaaagatattacaaatg |
685 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| ||||| |
|
|
| T |
38810703 |
tggttgatttgtatattaatgatgaaaggtattaaaaatg |
38810664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 38813848 - 38813794
Alignment:
| Q |
210 |
aaagttttgaatttgatgaactttcgagttgtggagttgtttgaactatatactc |
264 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||| |||| ||||||||| |
|
|
| T |
38813848 |
aaagttttggatttgatgaactttcgagttgttgagttgtctgaagtatatactc |
38813794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 38825712 - 38825658
Alignment:
| Q |
210 |
aaagttttgaatttgatgaactttcgagttgtggagttgtttgaactatatactc |
264 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||||||||||||||||||| |||| |
|
|
| T |
38825712 |
aaagtgttgaatttgatgaacattcaagttgtggagttgtttgaactatacactc |
38825658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 38825894 - 38825857
Alignment:
| Q |
52 |
ttctactgcaaaccaaaatatatcgcattcaaccatca |
89 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
38825894 |
ttctactacaaaccaaaatataccgcattcaaccatca |
38825857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 449 - 851
Target Start/End: Complemental strand, 35548873 - 35548475
Alignment:
| Q |
449 |
tgatgatataatactttataagggacaactttatgttgtggataaaatgggaacaatattctggttcaatgctttgtctttcaagttggttcagttttca |
548 |
Q |
| |
|
|||||||||||| ||| | | || ||||||||||||||||||| ||| || ||||| |||||| ||||| ||||| |||| |||||||||||||||||| |
|
|
| T |
35548873 |
tgatgatataattcttcacagggaacaactttatgttgtggatgaaaacgggacaattttctggatcaatcctttgactttgaagttggttcagttttca |
35548774 |
T |
|
| Q |
549 |
cctaaaaacttgtactgttgtga-ag--aaaatgggcatataagggtgaatgcttgtgaaaacaaaaagaaattagtagagtatgatggaagtctctatg |
645 |
Q |
| |
|
|| ||| |||||||||||||| || | || ||| ||| ||||||| || | |||| || ||| | |||||||| |||||||||| |||||||| |
|
|
| T |
35548773 |
cc---aaagttgtactgttgtgataggaataagaagcacatatgggtgaaatctgataaaaagaagaagcagttagtagaatatgatggaaatctctatg |
35548677 |
T |
|
| Q |
646 |
tggttgacctgtatattaatgatgaaagatattacaaatgggggttactatttgaaggatgtttttgtggaagtttataagcttgatcaagaatggggta |
745 |
Q |
| |
|
||||||| |||||||||||||| |||| ||| | || | || | | |||| |||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
35548676 |
tggttgatttgtatattaatgataaaagctatcataa----gcaatatttatacaaggttgtttttgtgaaaatttataagcttgatcaagaatggggta |
35548581 |
T |
|
| Q |
746 |
aatggttaaaagtaaaagatttgggtgatgtttcatttgttttgagtaaagactcaaactttgcattgttagctcaagattattatggatttgaaggaaa |
845 |
Q |
| |
|
||||||| | || |||| ||||||| | || ||||||||| ||| ||||||||||||| ||||| |||||||||| |||||||||| | || |||| |
|
|
| T |
35548580 |
aatggtttgatgtgccagatctgggtgaagctttgtttgttttgggtagagactcaaacttttcattgatagctcaagactattatggatgtcaaagaaa |
35548481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 264
Target Start/End: Complemental strand, 35549115 - 35549061
Alignment:
| Q |
210 |
aaagttttgaatttgatgaactttcgagttgtggagttgtttgaactatatactc |
264 |
Q |
| |
|
||||| |||||||||||||||| |||| ||||||||||||||||| |||||||| |
|
|
| T |
35549115 |
aaagtattgaatttgatgaactatcgatttgtggagttgtttgaaggatatactc |
35549061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 781 - 859
Target Start/End: Complemental strand, 34864671 - 34864593
Alignment:
| Q |
781 |
tttgttttgagtaaagactcaaactttgcattgttagctcaagattattatggatttgaaggaaattgcatctatttct |
859 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||| ||| | |||||||||||||||||| |||| |||||||| |||| |
|
|
| T |
34864671 |
tttgttttgggtaaagacttaaacttttcattgtctgctaatgattattatggatttgaaagaaactgcatctacttct |
34864593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 793 - 851
Target Start/End: Original strand, 34145953 - 34146011
Alignment:
| Q |
793 |
aaagactcaaactttgcattgttagctcaagattattatggatttgaaggaaattgcat |
851 |
Q |
| |
|
||||||||||||||| |||| | |||| |||| ||||||||||||||| |||||||||| |
|
|
| T |
34145953 |
aaagactcaaacttttcattatcagctaaagactattatggatttgaaagaaattgcat |
34146011 |
T |
|
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