View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4676-Insertion-2 (Length: 988)

Name: NF4676-Insertion-2
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4676-Insertion-2
NF4676-Insertion-2
[»] chr4 (8 HSPs)
chr4 (8-604)||(17436566-17437155)
chr4 (690-988)||(17436156-17436455)
chr4 (760-988)||(17432283-17432515)
chr4 (660-693)||(17436477-17436510)
chr4 (690-745)||(17432516-17432571)
chr4 (188-243)||(45716516-45716571)
chr4 (188-243)||(47421499-47421554)
chr4 (172-242)||(8485609-8485679)
[»] chr8 (2 HSPs)
chr8 (112-268)||(13876850-13877005)
chr8 (188-243)||(7927080-7927135)
[»] chr1 (4 HSPs)
chr1 (170-246)||(29306051-29306127)
chr1 (188-269)||(27392151-27392232)
chr1 (176-264)||(44893703-44893791)
chr1 (172-258)||(32350707-32350793)
[»] chr7 (2 HSPs)
chr7 (188-243)||(4935518-4935573)
chr7 (172-258)||(13442737-13442823)
[»] chr3 (1 HSPs)
chr3 (109-240)||(19917625-19917755)
[»] chr6 (1 HSPs)
chr6 (172-258)||(15676504-15676590)
[»] chr5 (2 HSPs)
chr5 (200-269)||(30507387-30507456)
chr5 (200-269)||(30547730-30547799)


Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 8 - 604
Target Start/End: Complemental strand, 17437155 - 17436566
Alignment:
Q  8 tgtcctgccaacatttcagcatccgagagggccgaggtcccaaattctcttcatcaacatataagaaaatagggcaatgatcggacaatccacacagatg 107  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | || ||||||    
T  17437155 tgtcctgccaacatttcagcatccgagagggccgaggtccccaattctcttcatcaacatataagaaaatagggcaatgatcggacaaccgacgcagatg 17437056  T
Q  108 agccacctgaacacaattcagccacaccaaacaccacgattcagagagcaaaaatttgtccaaaccgactcatagatttcccatcacccttgaaccaagt 207  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||    
T  17437055 agccacctgaacacaattcagccacaccaaataccacgatttagagagcaaaaatttgtcc-aaccgactcatagattttccatcacccttaaaccaagt 17436957  T
Q  208 aaacttacgcccgcaaaaaggtaaatcaatcaaaacattttcatcaatgaactgattgaaagcctcaaaatctgctcaacaacatttgggtctttggatt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17436956 aaacttacgcccgcaaaaaggtaaatcaatcaaaacattttcatcaatgaactgattgaaagcctcaaaatctgctcaacaacatttgggtctttggatt 17436857  T
Q  308 ttgtnnnnnnnnnnnnnnnntatttggatcgttggattcgtatcttctcaaaatatataatttacacatttcattgtaggttctatgcttaatggaatct 407  Q
    ||||                |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17436856 ttgt-------taaaaaaaatatttggatctttggattcgtatcttctcaaaatatataatttacacatttcattgtaggttctatgcttaatggaatct 17436764  T
Q  408 tgaacaaaagtctagttttcaa-accagttttattttgaagagnnnnnnnc-ctcaatattttccactataaataaccaatggcgaccattcttatattg 505  Q
    |||||||||||||||||||||| || |||||||||||||||||       | |||||||||||||||||||||||||||||||| |||||||||||||||    
T  17436763 tgaacaaaagtctagttttcaagacaagttttattttgaagagtttttttctctcaatattttccactataaataaccaatggcaaccattcttatattg 17436664  T
Q  506 gaactcatattaactatttcaactaacctctttctttttccttannnnnnnnnnnataagaggctagtcaattttaatcacaatcccaattccacatgg 604  Q
    |||||||||||||||||| | |||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||    
T  17436663 gaactcatattaactattgcgactaacctctttctttttcctta-ttttttttttataagaggctagtcaattttaatcacaatcccaattccacatgg 17436566  T

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Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 690 - 988
Target Start/End: Complemental strand, 17436455 - 17436156
Alignment:
Q  690 tatataaagcttgtatgacatcatacatccatatgatattatacatcaacaagcattaagcatagaaataatacataattttctcaaggtagtgccaaag 789  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  17436455 tatataaagcttgtatgacatcatacatccatatgatattatacatcaacaagcattaaccatataaataatacataattttctcaaggtagtgccaaag 17436356  T
Q  790 ttatagtcaacctaatgacagaacgttcacttggagcatcataagacatagtttcaaacacaacaaaccctcttgcatatcgaaaccttcctgttccaga 889  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17436355 ttatggtcaacctaatgacagaacgttcacttggagcatcataagacatagtttcaaacacaacaaaccctcttgcatatcgaaaccttcctgttccaga 17436256  T
Q  890 aacaacagatagctctcttgaattctcacgttgacgactattaccttgaatctccaaagtgctaccactatattccccattg-tgaacgcaagtgacaaa 988  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  17436255 aacaacagagagctctcttgaattctcacgttgacgactattaccttgtatctccaaagtgctaccactatattccccattgttgaacacaagtgacaaa 17436156  T

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Target: chr4; HSP #3
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 760 - 988
Target Start/End: Complemental strand, 17432515 - 17432283
Alignment:
Q  760 atacataattttctcaaggtagt---gccaaagttatagtcaacctaatgacagaacgttcacttggagcatcataagacatagtttcaaacacaacaaa 856  Q
    |||||||||||||||||| | ||   |||||||||| |||||| | ||  |||||| | | | ||| | |||||||||| | ||||||||||||||||||    
T  17432515 atacataattttctcaagatggtatagccaaagttacagtcaaacgaagaacagaatgattagttgaatcatcataagatacagtttcaaacacaacaaa 17432416  T
Q  857 ccctcttgcatatcgaaaccttcctgttccagaaacaacagatagctctcttgaattctcacgttgacgactattaccttgaatctccaaagtgctacca 956  Q
     ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || ||||| ||||||  |||||||||||||||||||||||||    
T  17432415 tcctcttgcatatcgaaaccttcctgttccggaaacaacagaaagctctcttgaattttcgcgttgtcgactagcaccttgaatctccaaagtgctacca 17432316  T
Q  957 ctatattccccattg-tgaacgcaagtgacaaa 988  Q
    ||||||| ||||||| ||||| |||||||||||    
T  17432315 ctatattgcccattgttgaacacaagtgacaaa 17432283  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 660 - 693
Target Start/End: Complemental strand, 17436510 - 17436477
Alignment:
Q  660 ctagtaacaagacaagataaattattcctttata 693  Q
    ||||||||||||||||||||||||||||||||||    
T  17436510 ctagtaacaagacaagataaattattcctttata 17436477  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 690 - 745
Target Start/End: Complemental strand, 17432571 - 17432516
Alignment:
Q  690 tatataaagcttgtatgacatcatacatccatatgatattatacatcaacaagcat 745  Q
    ||||||||||||||  || |||||||||||||||||||||||  | ||||||||||    
T  17432571 tatataaagcttgtcagatatcatacatccatatgatattatttaccaacaagcat 17432516  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 45716516 - 45716571
Alignment:
Q  188 ccatcacccttgaaccaagtaaacttacgcccgcaaaaaggtaaatcaatcaaaac 243  Q
    ||||| ||||| |||||||||||||| | ||| || ||||||||||||||||||||    
T  45716516 ccatcccccttaaaccaagtaaacttcctcccacataaaggtaaatcaatcaaaac 45716571  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 47421499 - 47421554
Alignment:
Q  188 ccatcacccttgaaccaagtaaacttacgcccgcaaaaaggtaaatcaatcaaaac 243  Q
    ||||| ||||| |||||||||||||| | ||| || ||||||||||||||||||||    
T  47421499 ccatcccccttaaaccaagtaaacttcctcccacataaaggtaaatcaatcaaaac 47421554  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 8485679 - 8485609
Alignment:
Q  172 ccgactcatagatttcccatcacccttgaaccaagtaaacttacgcccgcaaaaaggtaaatcaatcaaaa 242  Q
    ||||||||||||| ||||||| || || ||||||||||||||||| || |  ||||| |||||| ||||||    
T  8485679 ccgactcatagatctcccatcccctttaaaccaagtaaacttacgacctcccaaaggaaaatcattcaaaa 8485609  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 268
Target Start/End: Complemental strand, 13877005 - 13876850
Alignment:
Q  112 acctgaacacaattcagccacaccaaacaccacgattcagagagcaaaaatttgtccaaaccgactcatagatttcccatcacccttgaaccaagtaaac 211  Q
    ||||||| ||||||  |||||| ||| ||||||| ||| || | ||||||  ||||||| || ||||||||||   ||||| ||||| ||||| ||||||    
T  13877005 acctgaatacaatttggccacaacaagcaccacgcttcggataacaaaaacctgtccaa-cctactcatagatcgaccatcccccttaaaccaggtaaac 13876907  T
Q  212 ttacgcccgcaaaaaggtaaatcaatcaaaacattttcatcaatgaactgattgaaa 268  Q
    || || || || ||||||||||||||||| |||  |||||| || |||| |||||||    
T  13876906 tttcggccacataaaggtaaatcaatcaacacacattcatctataaactcattgaaa 13876850  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 7927080 - 7927135
Alignment:
Q  188 ccatcacccttgaaccaagtaaacttacgcccgcaaaaaggtaaatcaatcaaaac 243  Q
    ||||| ||||| |||||||||||||| | ||| || ||||||||||||||||||||    
T  7927080 ccatcccccttaaaccaagtaaacttcctcccacataaaggtaaatcaatcaaaac 7927135  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 29306051 - 29306127
Alignment:
Q  170 aaccgactcatagatttcccatcacccttgaaccaagtaaacttacgcccgcaaaaaggtaaatcaatcaaaacatt 246  Q
    ||||||||||| ||| | |||||||||||| |||| ||||||||||||||   || ||||||||||||||| |||||    
T  29306051 aaccgactcatggatcttccatcacccttgtaccaggtaaacttacgcccattaagaggtaaatcaatcaacacatt 29306127  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 269
Target Start/End: Complemental strand, 27392232 - 27392151
Alignment:
Q  188 ccatcacccttgaaccaagtaaacttacgcccgcaaaaaggtaaatcaatcaaaacattttcatcaatgaactgattgaaag 269  Q
    ||||||||||||||||| ||| |  | || | ||| ||||||||||| ||||| ||||||| |||||| |||||||||||||    
T  27392232 ccatcacccttgaaccacgtatatctgcggctgcataaaggtaaatctatcaacacattttaatcaataaactgattgaaag 27392151  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 44893703 - 44893791
Alignment:
Q  176 ctcatagatttcccatcacccttgaaccaagtaaacttacgcccgcaaaaaggtaaatcaatcaaaacattttcatcaatgaactgatt 264  Q
    |||||||| || |||||||||||||| ||||||||  | || || | || ||||||||||||||| | |||  ||||||||||||||||    
T  44893703 ctcatagacttgccatcacccttgaatcaagtaaaactgcgaccccgaagaggtaaatcaatcaacaaattaccatcaatgaactgatt 44893791  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 32350793 - 32350707
Alignment:
Q  172 ccgactcatagatttcccatcacccttgaaccaagtaaacttacgcccgcaaaaaggtaaatcaatcaaaacattttcatcaatgaa 258  Q
    ||||||||||||| ||||||| || || ||||||||||||||||| || |  ||||| |||||| ||| |  |||||| ||||||||    
T  32350793 ccgactcatagatctcccatcccctttaaaccaagtaaacttacgacctcccaaaggcaaatcattcagagaattttcgtcaatgaa 32350707  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 4935573 - 4935518
Alignment:
Q  188 ccatcacccttgaaccaagtaaacttacgcccgcaaaaaggtaaatcaatcaaaac 243  Q
    ||||| ||||| |||||||||||||| | ||| || ||||||||||||||||||||    
T  4935573 ccatcccccttaaaccaagtaaacttcctcccacataaaggtaaatcaatcaaaac 4935518  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 13442737 - 13442823
Alignment:
Q  172 ccgactcatagatttcccatcacccttgaaccaagtaaacttacgcccgcaaaaaggtaaatcaatcaaaacattttcatcaatgaa 258  Q
    ||||||||||||| ||||||| || || ||||||||||||||||| || |  ||||| ||||||| || |  |||||| ||||||||    
T  13442737 ccgactcatagatctcccatcccctttaaaccaagtaaacttacgacctcccaaaggcaaatcaagcagagaattttcgtcaatgaa 13442823  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 240
Target Start/End: Complemental strand, 19917755 - 19917625
Alignment:
Q  109 gccacctgaacacaattcagccacaccaaacaccacgattcagagagcaaaaatttgtccaaaccgactcatagatttcccatcacccttgaaccaagta 208  Q
    |||||||||||||||||  ||||||||||||||||   |||||||||||| ||  | ||| |||| |||||| ||    ||||  ||||| |||||||||    
T  19917755 gccacctgaacacaattaggccacaccaaacaccaatcttcagagagcaagaacctatcc-aacctactcatcgaacggccattccccttaaaccaagta 19917657  T
Q  209 aacttacgcccgcaaaaaggtaaatcaatcaa 240  Q
    ||||| | ||| || || ||||||||||||||    
T  19917656 aacttcctcccacataacggtaaatcaatcaa 19917625  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 258
Target Start/End: Original strand, 15676504 - 15676590
Alignment:
Q  172 ccgactcatagatttcccatcacccttgaaccaagtaaacttacgcccgcaaaaaggtaaatcaatcaaaacattttcatcaatgaa 258  Q
    ||||||||||||| ||||||| ||  | ||||||||||||||||| || |  ||||| |||||| ||| || |||||| ||||||||    
T  15676504 ccgactcatagatctcccatcccctctaaaccaagtaaacttacgacctcccaaaggcaaatcattcagaaaattttcgtcaatgaa 15676590  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 269
Target Start/End: Complemental strand, 30507456 - 30507387
Alignment:
Q  200 aaccaagtaaacttacgcccgcaaaaaggtaaatcaatcaaaacattttcatcaatgaactgattgaaag 269  Q
    ||||||||||| |||||||| || || |||||||||| |||| ||||||| || ||||| ||||| ||||    
T  30507456 aaccaagtaaaattacgcccacacaacggtaaatcaagcaaaccattttcctctatgaattgattaaaag 30507387  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 269
Target Start/End: Complemental strand, 30547799 - 30547730
Alignment:
Q  200 aaccaagtaaacttacgcccgcaaaaaggtaaatcaatcaaaacattttcatcaatgaactgattgaaag 269  Q
    ||||||||||| |||||||| || || |||||||||| |||| ||||||| || ||||| ||||| ||||    
T  30547799 aaccaagtaaaattacgcccacacaacggtaaatcaagcaaaccattttcctctatgaattgattaaaag 30547730  T

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