View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676-Insertion-3 (Length: 940)
Name: NF4676-Insertion-3
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 108 - 563
Target Start/End: Original strand, 26152422 - 26152893
Alignment:
| Q |
108 |
aatcaaagtttcatgtgacaatcataatataaatagtttgtcaac----------ttgacatcaatagtttgttaatttcttgattttttaaattctttg |
197 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26152422 |
aatcaaagtttcatgtgccaatcataatataaatagtttgtcaacagtttataacttgacatcaatagtttgttgatttcttgattttttaaattctttg |
26152521 |
T |
|
| Q |
198 |
taatttctt--ttcagctttgccatctctgttccgtgcaattgggtttcggttttcttgaagctattcttttcaaacaagttgtcaataagtctaattct |
295 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
26152522 |
taatttcttatttcagctttgccatctctgttctgtgcaattgggtttcggttttcttgaagctattcttttcaaacaagttgtcaacaagtctaattat |
26152621 |
T |
|
| Q |
296 |
tccattttgtattgttt----catgtatctgatataaatgattttgatttccttaagatgtcgccatttgtctttagtcttgaaggggtcaaactgggaa |
391 |
Q |
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||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26152622 |
tccattttgcattgtttaatgtatgtatctgatataaatgatttttatttcattaagatgtcgccatttgtctttagtcttgaaggggtcaaactgggaa |
26152721 |
T |
|
| Q |
392 |
cctttattgtttatgcaaactaaggaattgaacattatacccaatttactagacagggaagtccgtatgtgtatcttgcatgtgacttgataattctaaa |
491 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26152722 |
cctttattgtttatgcaaactaaggaattgaacattatacccaatttactagacagggaagtccgtatgtgtatcttgcatgtgacttgataattctaaa |
26152821 |
T |
|
| Q |
492 |
tgactaggtgataagataagctcaaatttattctaaatggcaaccgctccggcgagcttcgttcactccttc |
563 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26152822 |
tgactaggtgataagataagctcaaatttattctaaatggcaaccgctccggcgagcttcgttcactacttc |
26152893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 635 - 855
Target Start/End: Original strand, 26152886 - 26153108
Alignment:
| Q |
635 |
actacttccgggtgaccttgtgttctccgccgtatctccgtttagcatctcttctccttccttcactgagatctcgtttattccggccaactaggcgatt |
734 |
Q |
| |
|
||||||||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |
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| T |
26152886 |
actacttccgg-tgactttgtgttctccaccgtatctccatttagcatctcttctccttccttcactgagatctcgattattccagccaactagtcgatt |
26152984 |
T |
|
| Q |
735 |
tccgccactactcc---ggtgacgccaccttttcctaattgcttcaagttttactgagtattgttcctgggttcgattctgaagttttccttattgcttc |
831 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26152985 |
tccggcactactcctccggtgacgccaccttttcctaattgcttcaagttttactgagtattgttcctgggttcgattctgaagttttccttattgcttc |
26153084 |
T |
|
| Q |
832 |
aagtttacctgagtatgttcctgg |
855 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
26153085 |
aagtttacctgagtatgttcctgg |
26153108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 139 - 245
Target Start/End: Original strand, 26155694 - 26155801
Alignment:
| Q |
139 |
aatagtttgtcaacttgacatcaatagtttgttaatttcttgattttttaaattctttgtaatttct--tttcagctttgccatctctgttccgtgcaat |
236 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| |
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| T |
26155694 |
aatagtttgt-aacttcacatcaatagtttgttaatttctttattttttaaattctttgtaatttcttatttcagctttggcatctctgttctgtgcaat |
26155792 |
T |
|
| Q |
237 |
tgggtttcg |
245 |
Q |
| |
|
||||||||| |
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|
| T |
26155793 |
tgggtttcg |
26155801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 854 - 919
Target Start/End: Original strand, 26153340 - 26153405
Alignment:
| Q |
854 |
ggaaaaccattcgcgttaaaatcacacaatctgaatacgcagctgggctcgttgattgcagcagca |
919 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
26153340 |
ggaaaaccattcgcgttaaaatcatacaatctgaatacgcagctgggcacgttgattgcagcagca |
26153405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 240 - 365
Target Start/End: Original strand, 5958515 - 5958640
Alignment:
| Q |
240 |
gtttcggttttcttgaagctattcttttcaaacaagttgtcaataagtctaattcttccattttgtattgtttcatgtatctgatataaatgattttgat |
339 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| |||| || ||||||||||||| |||||| |
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| T |
5958515 |
gtttcggctttcttgaagctattcttttcaaacaagttgtcaataagtcggattcttccaaatttcattgtctcatatagctgatataaatgactttgat |
5958614 |
T |
|
| Q |
340 |
ttccttaagatgtcgccatttgtctt |
365 |
Q |
| |
|
|||||| |||||||||| |||||||| |
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|
| T |
5958615 |
ttccttcagatgtcgccgtttgtctt |
5958640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 19025830 - 19025752
Alignment:
| Q |
167 |
ttgttaatttcttgattttttaaattctttgtaatttct--tttcagctttgccatctctgttccgtgcaattgggtttc |
244 |
Q |
| |
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||||||||||||||||||||| | ||||||||||||| |||||||| ||| |||||||||| |||||| |||||||| |
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| T |
19025830 |
ttgttaatttcttgatttttttta-actttgtaatttcttatttcagctctgcgatctctgttctgtgcaaatgggtttc |
19025752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 566
Target Start/End: Complemental strand, 7048493 - 7048464
Alignment:
| Q |
537 |
gctccggcgagcttcgttcactccttcgtc |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
7048493 |
gctccggcgagcttcgttcactccttcgtc |
7048464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 489 - 518
Target Start/End: Original strand, 49871959 - 49871988
Alignment:
| Q |
489 |
aaatgactaggtgataagataagctcaaat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
49871959 |
aaatgactaggtgataagataagctcaaat |
49871988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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