View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4676-Insertion-4 (Length: 912)
Name: NF4676-Insertion-4
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676-Insertion-4 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 849; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 849; E-Value: 0
Query Start/End: Original strand, 6 - 912
Target Start/End: Complemental strand, 41876380 - 41875475
Alignment:
| Q |
6 |
catcatcaactccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaatgctactcccgatgccataccaccgcctacaat |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41876380 |
catcatcagctccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaatgctactcccgatgccataccaccgcctacaat |
41876281 |
T |
|
| Q |
106 |
tttcattttgttggaaaatcgagaagaggatactaaaatttatgaaaattttaaaacatttggttgatggattaaaataaaaatgagaacaaaccactta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41876280 |
tttcattttgttggaaaatcgagaagagaatactaaaatttatgaaaattttaaaacatttggttgatggattaacataaaaatgagaacaaaccactta |
41876181 |
T |
|
| Q |
206 |
taggtactacaagagtatcaatcagaggggcttgttccaaaagctccaaggatatggtaccttggccac-gcaagatcaactaaaaacatgtcaaagagc |
304 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
41876180 |
taggtactacaagagtatcaatctgaggggcttgttccaaaagctccaaggatatggtaccttggccactgcaagatcaactaaa--catgtcaaagagc |
41876083 |
T |
|
| Q |
305 |
aatgcttagcaaaagcaagtcacagttccctataacatattttagacatcaagttttacaagtttaataaataaaagtaacatgttgttgtagatcttat |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41876082 |
aatgcttagcaaaagcaagtcacagttccctataacatattttagacatcaagttttagaagtttaataaataaaagtaacatgttgttgtagatcttat |
41875983 |
T |
|
| Q |
405 |
tattatagctcaaaaaatcaattcaacactgaaaaatgattataacggataaaaattaggttatagcttacattaaataatttgaccttattttatcttt |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41875982 |
tattatagctcaaaaaatcaattcaacactgaaaaatgattataacggataaaaattaggttatagcttatattaaataatttgaccttattttatcttt |
41875883 |
T |
|
| Q |
505 |
tagtacagaaataacttatttataagtaagtacttatataataagtgtttttgctactaacacaaaattaaattgtttatctaaataagtcttggatgat |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41875882 |
tagtacagaaataacttatttataagtaagtacttatataataagtgtttttgctactaacacaaaattaagttgtttatctaaataagtcttggatgat |
41875783 |
T |
|
| Q |
605 |
ctataatcaacattaatcaacattcgacactctacctcagtatgcggccatcattagaagaaggtataaatatagcaccggtttcttgtcgcaatatatt |
704 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41875782 |
ctataatcaacattaatcaacattcgacactctacctcagtatgcggccatcattagaagaaggtataaatatagcaccggtttcttgtcgtaatatata |
41875683 |
T |
|
| Q |
705 |
cgcaacttcatctcttgaccgtatgttggcctcagaaaagttaaccttaccatcatacctcttaacattctcaagtttacaaattggcacattttttgga |
804 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41875682 |
cgcaacttcatctcttgaccttatgttggcctcagaaaagttaaccttaccatcatacctcttaacattctcaagtttacaaattggcacattttttgga |
41875583 |
T |
|
| Q |
805 |
gtaacaacgtatgcagggattccccttagttttgctgccaaagccaatgcagcagcatgatttccactgatttcagagaacaacattagaagagaataaa |
904 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41875582 |
gtaacaacgtatgcagggattccccttagttttgctgccaaagccaatgcagcagcatgatttccactgatttcagagaacaacattagaagagaataaa |
41875483 |
T |
|
| Q |
905 |
ttaactga |
912 |
Q |
| |
|
|||||||| |
|
|
| T |
41875482 |
ttaactga |
41875475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 530
Target Start/End: Complemental strand, 5269519 - 5269468
Alignment:
| Q |
479 |
aaataatttgaccttattttatcttttagtacagaaataacttatttataag |
530 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||||||| |||| |||||| |
|
|
| T |
5269519 |
aaataatttgactttattttatcttttattaaagaaataatttatatataag |
5269468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 2e-61; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 621 - 897
Target Start/End: Original strand, 40868457 - 40868733
Alignment:
| Q |
621 |
tcaacattcgacactctacctcagtatgcggccatcattagaagaaggtataaatatagcaccggtttcttgtcgcaatatattcgcaacttcatctctt |
720 |
Q |
| |
|
||||||||| ||| | |||||||||||||| ||||||||| ||| | ||||||| |||||||| |||||||| | || | |||||||| ||| |||||| |
|
|
| T |
40868457 |
tcaacattcaacagtgtacctcagtatgcgcccatcattataaggatgtataaaaatagcaccagtttcttgccacactttattcgcagtttcctctctt |
40868556 |
T |
|
| Q |
721 |
gaccgtatgttggcctcagaaaagttaaccttaccatcatacctcttaacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcag |
820 |
Q |
| |
|
|| || || ||||||||||| || |||||| |||| |||||| ||| |||||||||| |||||| ||||| ||||||| ||| |||||| |||||||| |
|
|
| T |
40868557 |
gatcgcatattggcctcagaccagataacctgaccaccataccgcttcacattctcaattttacatgttggcgcatttttaggaataacaatgtatgcag |
40868656 |
T |
|
| Q |
821 |
ggattccccttagttttgctgccaaagccaatgcagcagcatgatttccactgatttcagagaacaacattagaaga |
897 |
Q |
| |
|
|||| |||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | |||||| |
|
|
| T |
40868657 |
ggatcccccgtagttttgctgccagagccaatgcagcagcatggtttccactgatttcagagaacaacgtcagaaga |
40868733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 40867697 - 40867984
Alignment:
| Q |
17 |
ccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaatgctactcccgatgccataccaccgcctacaattttcattttgt |
116 |
Q |
| |
|
||||| || |||||||||||||| ||||| | |||||| || | ||||||||| ||||||||||| ||| || |||||| ||| || ||||||||| || |
|
|
| T |
40867697 |
cctttaggttcagcagccaaaatacgaatggccgggttgatagacttggcagccaatgctactcctgatatcaaaccacctcctgcagttttcattt-gt |
40867795 |
T |
|
| Q |
117 |
tggaaaatcgagaagaggatactaaaatttatgaaaattttaaaacattt-ggttgatggattaaaataaaaatgagaacaaaccacttataggtactac |
215 |
Q |
| |
|
||||||||| ||||| |||||| ||||| ||| ||||||| |||||||| || |||||| || | || |||| | |||||||||||||| ||||| || |
|
|
| T |
40867796 |
tggaaaatcaagaaggggataccaaaatcaatgcaaattttgaaacattttggatgatggtttgacatcaaaaagcaaacaaaccacttattggtaccac |
40867895 |
T |
|
| Q |
216 |
aagagtatcaatcagaggggcttgttccaaaagctccaaggatatggtaccttggccac-gcaagatcaactaaaaacatgtcaaagagca |
305 |
Q |
| |
|
||| ||||| | ||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| | ||||||||||||||||| |
|
|
| T |
40867896 |
aagtgtatctagttgaggggcttgttccagaagctccaaggatatggtaccctggccactgcaagatcaa--acaaacatgtcaaagagca |
40867984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 523
Target Start/End: Complemental strand, 31705070 - 31705029
Alignment:
| Q |
482 |
taatttgaccttattttatcttttagtacagaaataacttat |
523 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| ||||| |
|
|
| T |
31705070 |
taatttgacatgattttatcttttagtacagaaatagcttat |
31705029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 530
Target Start/End: Original strand, 41620374 - 41620423
Alignment:
| Q |
481 |
ataatttgaccttattttatcttttagtacagaaataacttatttataag |
530 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||| |||||| |
|
|
| T |
41620374 |
ataatttgactttattttatcttttgttacaaaaataacttatatataag |
41620423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 9e-48; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 9e-48
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 24817467 - 24817771
Alignment:
| Q |
6 |
catcatcaactccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaatgctactcccgatgccataccaccgcctacaat |
105 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| ||||||| ||| ||||| ||||||||||||| ||||| ||| | | |||||| |||||| ||| |
|
|
| T |
24817467 |
catcatcagctcctttaggctcagcagccaaaatacgaatagccggattaatcgccttggcagctattgctattcctgctatcataccgccgcctgcaag |
24817566 |
T |
|
| Q |
106 |
tttcattttgttggaaaatcgagaagaggatactaaaatttatgaaaattttaaaacatttggttgatggattaaaataaaaa--tgagaacaaaccact |
203 |
Q |
| |
|
| ||||||||| |||||||| |||||||||||||| | |||| ||||| | |||||||| | ||||||||| | |||||| |||||||||||||| |
|
|
| T |
24817567 |
tatcattttgtaacaaaatcgataagaggatactaaattatatgcaaattgtgaaacattttgatgatggattgacgtaaaaaagagagaacaaaccact |
24817666 |
T |
|
| Q |
204 |
tataggtactacaagagtatcaatcagaggggcttgttccaaaagctccaaggatatggtaccttggccac-gcaagatcaacta-aaaacatgtcaaag |
301 |
Q |
| |
|
||| ||||||||||| ||||| || ||||| |||||| | || |||||||||||||||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
24817667 |
tattggtactacaagtgtatcgatttgagggatttgttcaagaaactccaaggatatggtaccttggccactataagatcaaccagcaaacatgtcaaag |
24817766 |
T |
|
| Q |
302 |
agcaa |
306 |
Q |
| |
|
||||| |
|
|
| T |
24817767 |
agcaa |
24817771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 6 - 306
Target Start/End: Original strand, 24800391 - 24800695
Alignment:
| Q |
6 |
catcatcaactccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaatgctactcccgatgccataccaccgcctacaat |
105 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||| ||||||| ||| ||||| ||||||||||||| ||||| ||| | | |||||| || ||| ||| |
|
|
| T |
24800391 |
catcatcagctcctttaggctcagcagccaaaatacgaatagccggattaatcgccttggcagctattgctattcctgctatcataccgccacctgcaag |
24800490 |
T |
|
| Q |
106 |
tttcattttgttggaaaatcgagaagaggatactaaaatttatgaaaattttaaaacatttggttgatggattaaaataaaaa--tgagaacaaaccact |
203 |
Q |
| |
|
| ||||||||| |||||||| |||||||||||||| | |||| ||||| | |||||||| | ||||||||| | |||||| |||||||||||||| |
|
|
| T |
24800491 |
tatcattttgtaacaaaatcgataagaggatactaaattatatgcaaattgtgaaacattttgatgatggattgacgtaaaaaagagagaacaaaccact |
24800590 |
T |
|
| Q |
204 |
tataggtactacaagagtatcaatcagaggggcttgttccaaaagctccaaggatatggtaccttggccac-gcaagatcaacta-aaaacatgtcaaag |
301 |
Q |
| |
|
||| ||||||||||| ||||| || ||||| |||||| | || |||||||||||||||||||||||||| ||||||||| | ||||||||||||| |
|
|
| T |
24800591 |
tattggtactacaagtgtatcgatttgagggatttgttcaagaaactccaaggatatggtaccttggccactataagatcaaccagcaaacatgtcaaag |
24800690 |
T |
|
| Q |
302 |
agcaa |
306 |
Q |
| |
|
||||| |
|
|
| T |
24800691 |
agcaa |
24800695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 635 - 876
Target Start/End: Original strand, 24817944 - 24818185
Alignment:
| Q |
635 |
tctacctcagtatgcggccatcattagaagaaggtataaatatagcaccggtttcttgtcgcaatatattcgcaacttcatctcttgaccgtatgttggc |
734 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||| | ||||||| |||||||| | || | | ||| |||||| ||||||||| | || || | |
|
|
| T |
24817944 |
tctacctcattatgcggccatcatttgaagaaggtatatagatagcacttgtttcttgcctcactttgttcataacttcttctcttgactgcatattatc |
24818043 |
T |
|
| Q |
735 |
ctcagaaaagttaaccttaccatcatacctcttaacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcagggattccccttagt |
834 |
Q |
| |
|
||||| || ||||| || ||||| |||||||||| ||| |||| ||||||| ||| || |||| ||| |||| |||||||||| ||||||| |
|
|
| T |
24818044 |
ctcagccaaattaacgtttccatcgtacctcttaatattttcaactttacaagatggtgcacttttcggaaccacaataaatgcagggatcccccttatc |
24818143 |
T |
|
| Q |
835 |
tttgctgccaaagccaatgcagcagcatgatttccactgatt |
876 |
Q |
| |
|
||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
24818144 |
tttgctgccaaagataatgcagcagcatggttcccactgatt |
24818185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 481 - 533
Target Start/End: Complemental strand, 36641862 - 36641810
Alignment:
| Q |
481 |
ataatttgaccttattttatcttttagtacagaaataacttatttataagtaa |
533 |
Q |
| |
|
|||||||||| |||||||||||||| || ||||||||||||| ||||||||| |
|
|
| T |
36641862 |
ataatttgactttattttatcttttgttatagaaataacttatatataagtaa |
36641810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 541 - 595
Target Start/End: Original strand, 24817795 - 24817849
Alignment:
| Q |
541 |
tataataagtgtttttgctactaacacaaaattaaattgtttatctaaataagtc |
595 |
Q |
| |
|
|||||||||||||| || ||| ||||| || |||| ||||||||||||||||||| |
|
|
| T |
24817795 |
tataataagtgtttatgttacaaacactaagttaagttgtttatctaaataagtc |
24817849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 479 - 523
Target Start/End: Original strand, 3423849 - 3423893
Alignment:
| Q |
479 |
aaataatttgaccttattttatcttttagtacagaaataacttat |
523 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||| ||||||||||| |
|
|
| T |
3423849 |
aaataatttgactttattttatcttttggtacaaaaataacttat |
3423893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University