View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4676-Insertion-5 (Length: 770)
Name: NF4676-Insertion-5
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4676-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 10 - 765
Target Start/End: Original strand, 28319810 - 28320549
Alignment:
| Q |
10 |
aggatgattttcatcttaagaaaattcttggaaaaatgctccaacctttcttagttttagtcagcttcttaagctcatttctaatgcttgaacattcctt |
109 |
Q |
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| T |
28319810 |
aggatgattttcttcttaagaaaattcttggaaaaatgctccaacctttcttagttttagtcagcttcttaagctcatttctaatgcttgaacattcctt |
28319909 |
T |
|
| Q |
110 |
ttctagctctgatacacgatccctcaagttttcaccaccttgtgtagggtccacttgaccatttccattactccttgagaatccaaaatttgcactttgt |
209 |
Q |
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| T |
28319910 |
ctctagctctgatacacgatccctcaagttttcaccaccttgtgtagggtccacttgaccatttccattactccttgagaatccaaaatttgcactttgt |
28320009 |
T |
|
| Q |
210 |
gaagtctcaaggttgtctgaaacaaacaaccaactagaaattgatgtacgaagtcgaagttgttcaaaaaacaagacctgcactattactctcagtggta |
309 |
Q |
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| T |
28320010 |
gaagtctcaaggttgtctgaaacaaacaaccaactagaaattgatgtacgaagtcgaagttgttcaaaaaacaagacctgcactattactctcagtggta |
28320109 |
T |
|
| Q |
310 |
ttcgttcattttgtgcagcatgtgtgcttgcttctaatgacaacttttggcagttcatgagtctacaaaattgttccctttcagaatctattagccatgg |
409 |
Q |
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| T |
28320110 |
tccgttcattttgtgcagcatgtgtgcttgcttctaatgacaacttttggcagttcatgagtctacaaaattgttccctttcagaatctattagccatgg |
28320209 |
T |
|
| Q |
410 |
atgtgcctacaattgacataaaatttcttacattaattagaatcatcatatnnnnnnnngatgagtacaagttaaatgaggttaggatatgtagtagcga |
509 |
Q |
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| T |
28320210 |
atgtgcctacaattgacataaaatttcttacattaattaaaatcatcatataaaaaaaagatgagtacaagttaaacgaggttaggatatgtagtagcga |
28320309 |
T |
|
| Q |
510 |
cacgtcagattgaaaacatgtctcatgtcggacaatatcggcatatgtgattacattcaattaattttcttcaaaattgaaggtaagcaagcatcacctt |
609 |
Q |
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| T |
28320310 |
cacgtcagattgaaaacatgtctcctgtcagacaatatcggcatatgtga-----------taattttcttcaaaattgaa-gtaagcaagcatcacctt |
28320397 |
T |
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| Q |
610 |
aaggtatacatcaaataggcatgatataaaaccatcatccaatggcctagcataatcaggaattgaagcagcaagagattgaaacttaggcaacttcaaa |
709 |
Q |
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| T |
28320398 |
aaggtatacatc-aata-gcatgatat-aaaccatcatccaatggcctagcataatcaggaattgaagcagcaagagattgaaacttaggcaacttcaaa |
28320494 |
T |
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| Q |
710 |
ttaacatcaagagccacctcagcaagatatgcatccaacaaatttagccacaattg |
765 |
Q |
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| T |
28320495 |
ttaacatcaagagccacctcagtaagatatgcatccaacaaa-ttagccacaattg |
28320549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 231 - 417
Target Start/End: Complemental strand, 5951314 - 5951128
Alignment:
| Q |
231 |
acaaacaaccaactagaaattgatgtacgaagtcgaagttgttcaaaaaacaagacctgcactattactctcagtggtattcgttcattttgtgcagcat |
330 |
Q |
| |
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||||| ||||||| || || ||||| ||||||| ||||||||| ||||| | ||| || || |||||||| || || | || |||||||||||| |||| |
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| T |
5951314 |
acaaagaaccaaccggatatcgatgtgcgaagtctaagttgttcgaaaaataggacttgaacaattactcttagaggcaatctttcattttgtgctgcat |
5951215 |
T |
|
| Q |
331 |
gtgtgcttgcttctaatgacaacttttggcagttcatgagtctacaaaattgttccctttcagaatctattagccatggatgtgcct |
417 |
Q |
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| T |
5951214 |
gactgcttccttccaatgatagcttttggcaattcattagtctgcatagttgttcccgttccgaatctgtcagccatgtatgtgcct |
5951128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 106
Target Start/End: Complemental strand, 5951505 - 5951436
Alignment:
| Q |
37 |
ttggaaaaatgctccaacctttcttagttttagtcagcttcttaagctcatttctaatgcttgaacattc |
106 |
Q |
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|||||||||||||||||| |||||| ||||| || ||||||| | ||| |||| ||||||||||||||| |
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| T |
5951505 |
ttggaaaaatgctccaacttttctttgtttttgttagcttctgcaactcttttcgaatgcttgaacattc |
5951436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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