View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4676-Insertion-6 (Length: 455)

Name: NF4676-Insertion-6
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4676-Insertion-6
NF4676-Insertion-6
[»] chr1 (18 HSPs)
chr1 (46-455)||(35999042-35999462)
chr1 (131-181)||(12707875-12707925)
chr1 (131-181)||(12713329-12713379)
chr1 (131-181)||(12717420-12717470)
chr1 (130-183)||(13436464-13436517)
chr1 (122-183)||(52903247-52903308)
chr1 (132-183)||(21530697-21530748)
chr1 (111-182)||(27471567-27471638)
chr1 (132-183)||(39130767-39130818)
chr1 (136-182)||(2784568-2784614)
chr1 (104-182)||(36878441-36878519)
chr1 (130-183)||(6427356-6427409)
chr1 (129-182)||(16927186-16927239)
chr1 (130-183)||(34371720-34371772)
chr1 (121-182)||(38503317-38503378)
chr1 (122-183)||(46348383-46348444)
chr1 (121-181)||(1864882-1864942)
chr1 (131-183)||(14332642-14332694)
[»] chr5 (11 HSPs)
chr5 (132-182)||(28862313-28862363)
chr5 (109-171)||(12927639-12927701)
chr5 (109-183)||(39205865-39205939)
chr5 (130-181)||(23012410-23012461)
chr5 (130-173)||(31682040-31682082)
chr5 (117-183)||(16203795-16203861)
chr5 (110-183)||(3966489-3966562)
chr5 (130-183)||(6471889-6471942)
chr5 (110-183)||(11685925-11685998)
chr5 (142-175)||(36577684-36577717)
chr5 (130-183)||(36838549-36838602)
[»] chr3 (12 HSPs)
chr3 (104-183)||(28678283-28678362)
chr3 (121-185)||(7614413-7614477)
chr3 (121-183)||(11313800-11313862)
chr3 (121-183)||(16789009-16789071)
chr3 (93-183)||(25948887-25948977)
chr3 (144-183)||(15314876-15314915)
chr3 (130-183)||(8039835-8039888)
chr3 (130-183)||(8383263-8383316)
chr3 (142-183)||(10455808-10455849)
chr3 (132-185)||(21419453-21419506)
chr3 (130-175)||(49505162-49505207)
chr3 (103-175)||(29508423-29508495)
[»] chr7 (18 HSPs)
chr7 (130-183)||(3721099-3721152)
chr7 (109-181)||(5233614-5233686)
chr7 (130-179)||(8160422-8160471)
chr7 (123-183)||(7328691-7328751)
chr7 (110-182)||(11061077-11061149)
chr7 (104-183)||(15680789-15680868)
chr7 (142-181)||(33384584-33384623)
chr7 (132-183)||(35297672-35297723)
chr7 (7-36)||(4904541-4904570)
chr7 (130-171)||(5235992-5236033)
chr7 (142-183)||(18213033-18213074)
chr7 (144-185)||(18226964-18227005)
chr7 (132-181)||(23849460-23849509)
chr7 (131-183)||(7758329-7758381)
chr7 (123-175)||(17851430-17851482)
chr7 (130-182)||(19206056-19206108)
chr7 (111-183)||(20549778-20549850)
chr7 (130-182)||(24146822-24146874)
[»] chr6 (17 HSPs)
chr6 (123-183)||(24614409-24614469)
chr6 (104-182)||(7938096-7938174)
chr6 (110-183)||(7996378-7996451)
chr6 (110-183)||(8022350-8022423)
chr6 (134-175)||(17411876-17411917)
chr6 (130-183)||(32511666-32511719)
chr6 (130-182)||(32298608-32298660)
chr6 (130-181)||(7086801-7086852)
chr6 (132-183)||(14721249-14721300)
chr6 (130-183)||(7265593-7265646)
chr6 (130-183)||(7723250-7723303)
chr6 (130-183)||(9025494-9025547)
chr6 (144-181)||(11424713-11424750)
chr6 (110-175)||(17302333-17302398)
chr6 (130-175)||(24832594-24832639)
chr6 (131-183)||(7151419-7151471)
chr6 (131-183)||(9195754-9195806)
[»] chr4 (6 HSPs)
chr4 (105-171)||(21539879-21539945)
chr4 (130-181)||(5832696-5832747)
chr4 (131-173)||(49652982-49653024)
chr4 (130-175)||(999356-999401)
chr4 (142-183)||(7970537-7970578)
chr4 (134-175)||(13134460-13134501)
[»] chr8 (7 HSPs)
chr8 (132-181)||(11803267-11803316)
chr8 (110-183)||(13844596-13844669)
chr8 (132-183)||(4786338-4786389)
chr8 (130-183)||(14634141-14634194)
chr8 (130-175)||(14731718-14731763)
chr8 (130-182)||(12606830-12606882)
chr8 (130-174)||(39954288-39954332)
[»] chr2 (10 HSPs)
chr2 (103-175)||(31808056-31808128)
chr2 (132-175)||(30527603-30527646)
chr2 (142-172)||(2423887-2423917)
chr2 (125-183)||(34691805-34691863)
chr2 (125-183)||(34714217-34714275)
chr2 (122-182)||(14996224-14996285)
chr2 (110-175)||(21616748-21616813)
chr2 (142-183)||(34784982-34785023)
chr2 (131-183)||(18622613-18622665)
chr2 (127-183)||(20539674-20539730)
[»] scaffold0697 (1 HSPs)
scaffold0697 (132-183)||(1652-1703)
[»] scaffold0024 (1 HSPs)
scaffold0024 (132-175)||(68250-68293)


Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 46 - 455
Target Start/End: Complemental strand, 35999462 - 35999042
Alignment:
Q  46 cactgtatgttttcattctcttttatt---taattaatcatattattctatatgaaacatagacatagacacggacataccgatacagctaataattgaa 142  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||| ||| ||| |||||| |||||||||||| ||||||||| ||    
T  35999462 cactgtatgttttcattctcttttattatttaattaatcatattattctctatgaaacacagatataaacacgggcataccgatacaactaataatttaa 35999363  T
Q  143 gaaaatcatataatttagtataattatatgtgttggtgtcgaatccgaaaagtgtctctgcttcatggattattcttcttaaataaaaat------taat 236  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| | |||||||||||||||||||||||      ||||    
T  35999362 gaaaatcatataatttagtataattatatgtgttgatgtcggatccaaaaagtgtctctgcttcgtagattattcttcttaaataaaaataaaaattaat 35999263  T
Q  237 catattattaatgtcacatagtatatcttagctattgtatttttattnnnnnnngttacatannnnnnnn--acaaataaatataattaatcctgaatca 334  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||       ||||| |           |||||||||||||||||||| |||||||    
T  35999262 catattattaatgtcacatagtatatcttagctattgtatatttattaaaaaaagttactttttttttttttacaaataaatataattaatcttgaatca 35999163  T
Q  335 tatcttgggggttaagtgattagttaatagtgctgggtgggatgtcagagtatatgcatgcagtttatgtaagacaagaagttatgccaaaacatttggt 434  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35999162 tatcttgggggttaagtgattagttaatagtgctgggtgggatgtcagagtatatgcatgcagtttatgtaagacaagaagttatgccaaaacatttggt 35999063  T
Q  435 tttggttattgttattaggtg 455  Q
    |||||||||||||||||||||    
T  35999062 tttggttattgttattaggtg 35999042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 12707925 - 12707875
Alignment:
Q  131 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 181  Q
    ||||||||| |||||||||||||||||||||  |||||||||| |||||||    
T  12707925 ctaataatttaagaaaatcatataatttagtgcaattatatgtattggtgt 12707875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 12713379 - 12713329
Alignment:
Q  131 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 181  Q
    ||||||||| |||||||||| |||||||||| ||||||||||| |||||||    
T  12713379 ctaataatttaagaaaatcacataatttagtgtaattatatgtattggtgt 12713329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 12717470 - 12717420
Alignment:
Q  131 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 181  Q
    ||||||||| |||||||||| |||||||||| ||||||||||| |||||||    
T  12717470 ctaataatttaagaaaatcacataatttagtgtaattatatgtattggtgt 12717420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 13436464 - 13436517
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||||||| ||| |||||| |||||| ||| |||||||||||||||||||||    
T  13436464 gctaataatttaaggaaatcacataattcagtgtaattatatgtgttggtgtcg 13436517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 52903247 - 52903308
Alignment:
Q  122 ccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||| | |||||||| || |||||||||||||| ||| ||||||||||||| |||||||    
T  52903247 ccgataccgttaataatttaataaaatcatataattcagtgtaattatatgtgtcggtgtcg 52903308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 21530697 - 21530748
Alignment:
Q  132 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||  ||||||||||||||||| ||||||||||| |||| |||||||    
T  21530697 taataatttgagaaaatcatataatttggtataattataagtgtcggtgtcg 21530748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 182
Target Start/End: Complemental strand, 27471638 - 27471567
Alignment:
Q  111 acacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtc 182  Q
    |||| |||| |||||||| ||||||||||  |||||| || |||||| ||| |||||| |||||||||||||    
T  27471638 acactgacacaccgataccgctaataatttgagaaaagcacataattcagtgtaattacatgtgttggtgtc 27471567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 39130818 - 39130767
Alignment:
Q  132 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||  ||||||| |||||||||||| ||||||||||||| |||||||    
T  39130818 taataattttagaaaattatataatttagtgtaattatatgtgtcggtgtcg 39130767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 2784568 - 2784614
Alignment:
Q  136 aattgaagaaaatcatataatttagtataattatatgtgttggtgtc 182  Q
    |||| |||||||||| |||||| ||||||||||||||||| ||||||    
T  2784568 aatttaagaaaatcacataattgagtataattatatgtgtcggtgtc 2784614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 36878441 - 36878519
Alignment:
Q  104 gacatagacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtc 182  Q
    ||||||||||| ||||  |||| || ||||||||||  ||||||||| |||||| ||| |||||||| |||| ||||||    
T  36878441 gacatagacactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattataggtgtcggtgtc 36878519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 6427356 - 6427409
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||||  ||||||||| |||||| | | |||||||||||||||||||||    
T  6427356 gctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcg 6427409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 16927239 - 16927186
Alignment:
Q  129 agctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtc 182  Q
    |||||||||||  | |||||||||||||| ||| ||||||||| ||||||||||    
T  16927239 agctaataatttgaaaaaatcatataattcagtgtaattatatatgttggtgtc 16927186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 34371720 - 34371772
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||||||||| |||||||| |||||| ||| ||||||||||||| |||||||    
T  34371720 gctaataattga-gaaaatcacataattcagtgtaattatatgtgtcggtgtcg 34371772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 38503317 - 38503378
Alignment:
Q  121 accgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtc 182  Q
    ||||| || ||||||||||  ||||||||||||| || ||| ||||||||||||| ||||||    
T  38503317 accgacaccgctaataatttgagaaaatcatatatttcagtgtaattatatgtgtcggtgtc 38503378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 46348444 - 46348383
Alignment:
Q  122 ccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||| |||||||||||||  | |||||||||||||||||| |||||| | |||| |||||||    
T  46348444 ccgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcg 46348383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 181
Target Start/End: Complemental strand, 1864942 - 1864882
Alignment:
Q  121 accgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 181  Q
    ||||| |||| ||||||||  ||||||||| |||||| ||| ||||||||||||| |||||    
T  1864942 accgacacagttaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgt 1864882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 14332694 - 14332642
Alignment:
Q  131 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||||||  ||||||||| |||||||||| ||||||||||| | |||||||    
T  14332694 ctaataatttgagaaaatcacataatttagtgtaattatatgtctcggtgtcg 14332642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 28862313 - 28862363
Alignment:
Q  132 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtc 182  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28862313 taataattgaagaaaatcatataatttagtataattacatgtgttggtgtc 28862363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 171
Target Start/End: Original strand, 12927639 - 12927701
Alignment:
Q  109 agacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatat 171  Q
    ||||||||||| ||||| |  ||||||||||  |||||||||||||||||||| |||||||||    
T  12927639 agacacggacacaccgacatcgctaataatttgagaaaatcatataatttagtgtaattatat 12927701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 39205865 - 39205939
Alignment:
Q  109 agacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||||||||   ||| || ||||||||||  ||||||||||||||||  || |||||||||||||||||||||    
T  39205865 agacacggacacgtcgacactgctaataatttgagaaaatcatataattaggtgtaattatatgtgttggtgtcg 39205939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 23012461 - 23012410
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 181  Q
    ||||||||||  |||||||||||||||||| | ||||||||||||| |||||    
T  23012461 gctaataatttgagaaaatcatataatttaatgtaattatatgtgtcggtgt 23012410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 173
Target Start/End: Original strand, 31682040 - 31682082
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgt 173  Q
    |||||||||||| ||||||||||||||||||| |||||||||||    
T  31682040 gctaataattga-gaaaatcatataatttagtgtaattatatgt 31682082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 183
Target Start/End: Complemental strand, 16203861 - 16203795
Alignment:
Q  117 acataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||| |||| || ||||||||||  ||||||||  |||||||||| ||||||||||||| |||||||    
T  16203861 acatgccgacactgctaataatttgagaaaatctcataatttagtgtaattatatgtgtcggtgtcg 16203795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 3966489 - 3966562
Alignment:
Q  110 gacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||| ||||| |||| || ||||||||||  ||||||||| | |||| ||| ||||||||||||| |||||||    
T  3966489 gacactgacatgccgacaccgctaataatttgagaaaatcacacaattcagtgtaattatatgtgtcggtgtcg 3966562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 6471942 - 6471889
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||||  ||||||||| |||||| ||| ||||||||||||| |||||||    
T  6471942 gctaataatttgagaaaatcacataattcagtgtaattatatgtgtgggtgtcg 6471889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 11685925 - 11685998
Alignment:
Q  110 gacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||| ||||| |||| || ||||||||||  ||||| ||  |||||||||| ||||||||||||| |||||||    
T  11685925 gacactgacatgccgacaccgctaataatttgagaaagtcgcataatttagtgtaattatatgtgtcggtgtcg 11685998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 36577717 - 36577684
Alignment:
Q  142 agaaaatcatataatttagtataattatatgtgt 175  Q
    ||||||| ||||||||||||||||||||||||||    
T  36577717 agaaaatgatataatttagtataattatatgtgt 36577684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 36838549 - 36838602
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||||  ||||||| | |||||||||| ||||||||||||| |||||||    
T  36838549 gctaataatttgagaaaattacataatttagtgtaattatatgtgtcggtgtcg 36838602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 28678283 - 28678362
Alignment:
Q  104 gacatagacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||||| ||||| ||||  | |||||||||| || ||||||| |||||||||||||||| ||||||| |||||||    
T  28678283 gacatagacactgacatgccgacgctgctaataatttaataaaatcacataatttagtataattgtatgtgtcggtgtcg 28678362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 7614477 - 7614413
Alignment:
Q  121 accgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcgaa 185  Q
    ||||| |||| |||||||| |||||||||| |||||| ||||||||||||| ||| |||||||||    
T  7614477 accgacacagttaataatttaagaaaatcacataattcagtataattatatatgtcggtgtcgaa 7614413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 11313862 - 11313800
Alignment:
Q  121 accgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||| || ||||||||||  ||||||||| |||||||||| |||||||||||||| ||||||    
T  11313862 accgacactgctaataatttgagaaaatcacataatttagtgtaattatatgtgttagtgtcg 11313800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 16789009 - 16789071
Alignment:
Q  121 accgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||| || |||||||| || |||||||||||||| ||| |||||||| ||||||||||||    
T  16789009 accgatatagttaataatttaaaaaaatcatataattcagtgtaattataagtgttggtgtcg 16789071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 25948977 - 25948887
Alignment:
Q  93 tatgaaacatagacatagacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||| || |||||  ||||| ||||| ||||||| ||||||||||  | ||||||| |||||| ||| |||||||| ||||||||||||    
T  25948977 tatgaagcacagacacggacactgacatgccgatacggctaataatttgaaaaaatcacataattcagtgtaattataagtgttggtgtcg 25948887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 183
Target Start/End: Complemental strand, 15314915 - 15314876
Alignment:
Q  144 aaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||| |||||||||| |||||||||||||||||||||    
T  15314915 aaaatcacataatttagtgtaattatatgtgttggtgtcg 15314876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 8039888 - 8039835
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||||  ||||||| |||||||| ||| ||||||||||||| |||||||    
T  8039888 gctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcg 8039835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 8383263 - 8383316
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||||  |||||||||||||||| ||| |||||||| |||| |||||||    
T  8383263 gctaataatttgagaaaatcatataattcagtgtaattataagtgtcggtgtcg 8383316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 10455808 - 10455849
Alignment:
Q  142 agaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||||||||||| | ||| |||||||||||||||||||||    
T  10455808 agaaaatcatataactaagtgtaattatatgtgttggtgtcg 10455849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 21419506 - 21419453
Alignment:
Q  132 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcgaa 185  Q
    |||||||| |||||||| |||||||| | | ||||||||| |||||||||||||    
T  21419506 taataatttaagaaaataatataattcaatgtaattatatatgttggtgtcgaa 21419453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 49505207 - 49505162
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgt 175  Q
    ||||||||||  ||||||||| |||||||||| |||||||||||||    
T  49505207 gctaataatttgagaaaatcacataatttagtgtaattatatgtgt 49505162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 29508423 - 29508495
Alignment:
Q  103 agacatagacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgt 175  Q
    |||||| ||||  |||| ||||||||  |||||||||  | |||||||||||||| ||| |||||||||||||    
T  29508423 agacatggacattgacacaccgataccactaataatttgaaaaaatcatataattcagtgtaattatatgtgt 29508495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 3721099 - 3721152
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||||  ||||||||| |||||||||||||||||||||||| |||||||    
T  3721099 gctaataatttgagaaaatcacataatttagtataattatatgtgtcggtgtcg 3721152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 5233614 - 5233686
Alignment:
Q  109 agacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 181  Q
    |||||| |||| |||||||| | ||||||||  ||||||||| ||||| |||| |||||||||||||||||||    
T  5233614 agacactgacacaccgatacggttaataatttgagaaaatcacataatctagtgtaattatatgtgttggtgt 5233686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 8160422 - 8160471
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggt 179  Q
    |||||||||| |||||||| | |||||||||| |||||||||||||||||    
T  8160422 gctaataatttaagaaaattacataatttagtgtaattatatgtgttggt 8160471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 7328751 - 7328691
Alignment:
Q  123 cgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||| ||||||||||  ||||||| | |||||||||| ||||||||||||| |||||||    
T  7328751 cgatactgctaataatttgagaaaataacataatttagtgtaattatatgtgtcggtgtcg 7328691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 11061149 - 11061077
Alignment:
Q  110 gacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtc 182  Q
    ||||| |||| ||||| |||||||||||||  | ||||||| ||||||||||||||||| | |||| ||||||    
T  11061149 gacactgacacaccgacacagctaataatttgaaaaaatcacataatttagtataattacaagtgtcggtgtc 11061077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 183
Target Start/End: Original strand, 15680789 - 15680868
Alignment:
Q  104 gacatagacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||| ||||| ||||  |||| | ||||||||||| || ||||||| |||||||||| |||||||| |||| |||||||    
T  15680789 gacatggacactgacacgccgacatagctaataattaaaaaaaatcacataatttagtgtaattataagtgtcggtgtcg 15680868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 33384623 - 33384584
Alignment:
Q  142 agaaaatcatataatttagtataattatatgtgttggtgt 181  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  33384623 agaaaatcctataatttagtgtaattatatgtgttggtgt 33384584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 35297723 - 35297672
Alignment:
Q  132 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||  ||||||||| |||||| | |||||||||||||||||||||||    
T  35297723 taataatttgagaaaatcacataattcattataattatatgtgttggtgtcg 35297672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 4904570 - 4904541
Alignment:
Q  7 aaaatactcaaaccataaaagttcatccag 36  Q
    ||||||||||||||||||||||||||||||    
T  4904570 aaaatactcaaaccataaaagttcatccag 4904541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Original strand, 5235992 - 5236033
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatat 171  Q
    |||||||||| |||||||| |||||||||||| |||||||||    
T  5235992 gctaataatttaagaaaattatataatttagtgtaattatat 5236033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 18213074 - 18213033
Alignment:
Q  142 agaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||| |||||||||| ||||||||||||| |||||||    
T  18213074 agaaaatcacataatttagtgtaattatatgtgtcggtgtcg 18213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 18226964 - 18227005
Alignment:
Q  144 aaaatcatataatttagtataattatatgtgttggtgtcgaa 185  Q
    |||||||||||||| |||||||| |||||||| |||||||||    
T  18226964 aaaatcatataattcagtataatcatatgtgtcggtgtcgaa 18227005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 181
Target Start/End: Complemental strand, 23849509 - 23849460
Alignment:
Q  132 taataattgaagaaaatcatataatttagtataattatatgtgttggtgt 181  Q
    |||||||| ||||||| || |||||| ||||||||||||||||| |||||    
T  23849509 taataatttaagaaaaacacataattcagtataattatatgtgtcggtgt 23849460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 7758329 - 7758381
Alignment:
Q  131 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||||||  ||||||| |||||||| ||||||||||| ||||| |||||||    
T  7758329 ctaataattttagaaaattatataattcagtataattatgtgtgtcggtgtcg 7758381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 17851430 - 17851482
Alignment:
Q  123 cgatacagctaataattgaagaaaatcatataatttagtataattatatgtgt 175  Q
    |||||| ||||||||||  ||||||||| |||||| ||| |||||||||||||    
T  17851430 cgataccgctaataattttagaaaatcacataattcagtgtaattatatgtgt 17851482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 19206056 - 19206108
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtc 182  Q
    ||||||||||  ||||||||| |||||| | ||||||||||||||| ||||||    
T  19206056 gctaataatttgagaaaatcacataattcattataattatatgtgtcggtgtc 19206108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 20549778 - 20549850
Alignment:
Q  111 acacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||| |||| ||||| || ||||||||||  |||||||||  ||||| ||| ||||||||||||| |||||||    
T  20549778 acactgacacaccgacaccgctaataatttgagaaaatcacgtaattcagtgtaattatatgtgtcggtgtcg 20549850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 24146822 - 24146874
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtc 182  Q
    ||||||||||  ||||||||| |||||| | ||||||||||||||| ||||||    
T  24146822 gctaataattttagaaaatcacataattcaatataattatatgtgtcggtgtc 24146874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 24614409 - 24614469
Alignment:
Q  123 cgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||| |||||||||| || ||||| |||||||||||| ||||| |||||||||||||||    
T  24614409 cgataccgctaataatttaaaaaaattatataatttagtgtaattgtatgtgttggtgtcg 24614469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 182
Target Start/End: Original strand, 7938096 - 7938174
Alignment:
Q  104 gacatagacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtc 182  Q
    ||||| ||||| ||||  |||| |||||||||||||  | |||||||||||||||||| |||||||| |||| ||||||    
T  7938096 gacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattataagtgtcggtgtc 7938174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 7996451 - 7996378
Alignment:
Q  110 gacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||| ||||| |||| || ||||||||||  |||||||||||||||| ||| |||||||||| || |||||||    
T  7996451 gacactgacatgccgacactgctaataatttgagaaaatcatataattcagtgtaattatatgcgtcggtgtcg 7996378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 8022350 - 8022423
Alignment:
Q  110 gacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||| ||||| |||| || ||||||||||  |||||||||||||||| ||| |||||||||| || |||||||    
T  8022350 gacactgacatgccgacactgctaataatttgagaaaatcatataattcagtgtaattatatgcgtcggtgtcg 8022423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 175
Target Start/End: Complemental strand, 17411917 - 17411876
Alignment:
Q  134 ataattgaagaaaatcatataatttagtataattatatgtgt 175  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  17411917 ataatttaagaaaatcatataattcagtataattatatgtgt 17411876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 32511719 - 32511666
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||||||| |||||||||| |||||| ||| |||||||| ||||||||||||    
T  32511719 gctaataatttaagaaaatcacataattcagtgtaattataagtgttggtgtcg 32511666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 32298660 - 32298608
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtc 182  Q
    |||||||||| ||||  |||| |||||||||| ||||||||||||||||||||    
T  32298660 gctaataatttaagatcatcacataatttagtgtaattatatgtgttggtgtc 32298608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 7086801 - 7086852
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 181  Q
    ||||||||||  ||||||||| |||||||||| ||||||||||||| |||||    
T  7086801 gctaataatttgagaaaatcacataatttagtgtaattatatgtgtcggtgt 7086852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 14721249 - 14721300
Alignment:
Q  132 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||||| |||||||| | |||||| | |||||||||||||||||||||||    
T  14721249 taataatttaagaaaattacataattcactataattatatgtgttggtgtcg 14721300  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 7265646 - 7265593
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||||  ||||||||| |||||| ||| ||||||||||||| |||||||    
T  7265646 gctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 7265593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 7723303 - 7723250
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||||  |||||||||||||||| || |||||||||||| | |||||||    
T  7723303 gctaataatttgagaaaatcatataattcagcataattatatgtatcggtgtcg 7723250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 9025547 - 9025494
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||||  ||||||||| |||||| ||| ||||||||||||| |||||||    
T  9025547 gctaataatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 9025494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 11424750 - 11424713
Alignment:
Q  144 aaaatcatataatttagtataattatatgtgttggtgt 181  Q
    |||||||||||||| | |||||||||||||||||||||    
T  11424750 aaaatcatataattcaatataattatatgtgttggtgt 11424713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 17302333 - 17302398
Alignment:
Q  110 gacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgt 175  Q
    ||||| ||||||  || ||| ||||||||| |||||||||| ||||||| || |||||||||||||    
T  17302333 gacactgacatatggacacaactaataatttaagaaaatcacataattttgtgtaattatatgtgt 17302398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 24832594 - 24832639
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgt 175  Q
    ||||||||||  |||||||| ||||||||||| |||||||||||||    
T  24832594 gctaataatttgagaaaatcttataatttagtgtaattatatgtgt 24832639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 7151419 - 7151471
Alignment:
Q  131 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||||||  | ||||||| |||||| ||| |||||||||||||||||||||    
T  7151419 ctaataatttgaaaaaatcacataattaagtgtaattatatgtgttggtgtcg 7151471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 9195806 - 9195754
Alignment:
Q  131 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||||||  ||||||| | |||||||||| ||||||||||||| |||||||    
T  9195806 ctaataatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcg 9195754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 21539945 - 21539879
Alignment:
Q  105 acatagacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatat 171  Q
    |||||||||| ||||| |||| ||   |||||||| ||||||||||||||||||||| |||||||||    
T  21539945 acatagacactgacatgccgacaccattaataatttaagaaaatcatataatttagtgtaattatat 21539879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 5832747 - 5832696
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgt 181  Q
    ||||||||||  |||||||||||| |||||||||| |||| |||||||||||    
T  5832747 gctaataatttgagaaaatcatatgatttagtatagttatttgtgttggtgt 5832696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 49653024 - 49652982
Alignment:
Q  131 ctaataattgaagaaaatcatataatttagtataattatatgt 173  Q
    ||||||||| |||||||||| |||||| |||||||||||||||    
T  49653024 ctaataatttaagaaaatcagataattcagtataattatatgt 49652982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 999401 - 999356
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgt 175  Q
    ||||||||||  || ||||||||||||||||| |||||||||||||    
T  999401 gctaataatttgagtaaatcatataatttagtgtaattatatgtgt 999356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 7970537 - 7970578
Alignment:
Q  142 agaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||||||||||||| ||| ||||||||||| |||||||||    
T  7970537 agaaaatcatataattcagtgtaattatatgttttggtgtcg 7970578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 13134460 - 13134501
Alignment:
Q  134 ataattgaagaaaatcatataatttagtataattatatgtgt 175  Q
    |||||| |||||||||| |||||||||| |||||||||||||    
T  13134460 ataatttaagaaaatcacataatttagtgtaattatatgtgt 13134501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 11803267 - 11803316
Alignment:
Q  132 taataattgaagaaaatcatataatttagtataattatatgtgttggtgt 181  Q
    |||||||| |||||||||| |||||| ||| |||||||||||||||||||    
T  11803267 taataatttaagaaaatcacataattcagtgtaattatatgtgttggtgt 11803316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 13844669 - 13844596
Alignment:
Q  110 gacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||||  |||| || ||||||||||  ||||||||| |||||| ||| ||||||||||||| |||||||    
T  13844669 gacacggacacgccgacactgctaataatttgagaaaatcacataattgagtgtaattatatgtgtcggtgtcg 13844596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 4786389 - 4786338
Alignment:
Q  132 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||||| |||||||||| |||||| ||| ||||||||||||| |||||||    
T  4786389 taataatttaagaaaatcacataattcagtgtaattatatgtgtcggtgtcg 4786338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 14634194 - 14634141
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||| |||| |||||||| |||||||| ||| ||||||||| |||||||||||    
T  14634194 gctaacaatttaagaaaattatataattcagtgtaattatatttgttggtgtcg 14634141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 14731718 - 14731763
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgt 175  Q
    ||||||||||  ||||||||| |||||||||| |||||||||||||    
T  14731718 gctaataatttgagaaaatcacataatttagtgtaattatatgtgt 14731763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 12606882 - 12606830
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtc 182  Q
    ||||||||||  |||||||||||||||| | | ||||||||||||| ||||||    
T  12606882 gctaataatttgagaaaatcatataattcaatgtaattatatgtgtcggtgtc 12606830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 39954332 - 39954288
Alignment:
Q  130 gctaataattgaagaaaatcatataatttagtataattatatgtg 174  Q
    ||||||||||  ||||||||| |||||||||| ||||||||||||    
T  39954332 gctaataatttgagaaaatcacataatttagtgtaattatatgtg 39954288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 175
Target Start/End: Original strand, 31808056 - 31808128
Alignment:
Q  103 agacatagacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgt 175  Q
    |||||| ||||| |||| ||||| || |||||||||| || ||||||| |||||| ||| |||||||||||||    
T  31808056 agacattgacactgacacaccgacaccgctaataatttaacaaaatcacataattcagtgtaattatatgtgt 31808128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 30527646 - 30527603
Alignment:
Q  132 taataattgaagaaaatcatataatttagtataattatatgtgt 175  Q
    ||||||||  |||||||||||||||||||| |||||||||||||    
T  30527646 taataatttgagaaaatcatataatttagtgtaattatatgtgt 30527603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 172
Target Start/End: Original strand, 2423887 - 2423917
Alignment:
Q  142 agaaaatcatataatttagtataattatatg 172  Q
    |||||||||||||||||||||||||||||||    
T  2423887 agaaaatcatataatttagtataattatatg 2423917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 34691863 - 34691805
Alignment:
Q  125 atacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||| ||||||||||  | |||||||||||||| ||| ||||||||||||| |||||||    
T  34691863 ataccgctaataatttgataaaatcatataattcagtgtaattatatgtgtcggtgtcg 34691805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 34714275 - 34714217
Alignment:
Q  125 atacagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||| ||||||||||  | |||||||||||||| ||| ||||||||||||| |||||||    
T  34714275 ataccgctaataatttgataaaatcatataattcagtgtaattatatgtgtcggtgtcg 34714217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 14996285 - 14996224
Alignment:
Q  122 ccgatacagctaataatt-gaagaaaatcatataatttagtataattatatgtgttggtgtc 182  Q
    |||| ||||||||||||| ||| |||||||||||||||||| |||||| | |||| ||||||    
T  14996285 ccgacacagctaataatttgaaaaaaatcatataatttagtgtaattacaagtgtcggtgtc 14996224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 21616748 - 21616813
Alignment:
Q  110 gacacggacataccgatacagctaataattgaagaaaatcatataatttagtataattatatgtgt 175  Q
    ||||||||||  |||| || ||||||||||  ||||||||| |||||| ||| |||||||||||||    
T  21616748 gacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattatatgtgt 21616813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 34785023 - 34784982
Alignment:
Q  142 agaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||| |||||||||| ||||||||||||| |||||||    
T  34785023 agaaaatcacataatttagtgtaattatatgtgtcggtgtcg 34784982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 18622613 - 18622665
Alignment:
Q  131 ctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||| || ||||||| |||||| ||| |||||||| ||||||||||||    
T  18622613 ctaataatttaataaaatcacataattcagtgtaattatacgtgttggtgtcg 18622665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 20539730 - 20539674
Alignment:
Q  127 acagctaataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    |||||||||||||  | |||||||||||||||||| |||||| | |||| |||||||    
T  20539730 acagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcg 20539674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 1652 - 1703
Alignment:
Q  132 taataattgaagaaaatcatataatttagtataattatatgtgttggtgtcg 183  Q
    ||||||||  ||||||||||||||||| ||||||||||| |||| |||||||    
T  1652 taataatttgagaaaatcatataatttggtataattataagtgtcggtgtcg 1703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 175
Target Start/End: Complemental strand, 68293 - 68250
Alignment:
Q  132 taataattgaagaaaatcatataatttagtataattatatgtgt 175  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||    
T  68293 taataatttgagaaaatcatataatttagtataattataggtgt 68250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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