View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4676_high_14 (Length: 303)

Name: NF4676_high_14
Description: NF4676
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4676_high_14
NF4676_high_14
[»] chr1 (8 HSPs)
chr1 (87-289)||(43356770-43356972)
chr1 (154-219)||(2628317-2628382)
chr1 (156-243)||(13875104-13875191)
chr1 (179-239)||(48492752-48492812)
chr1 (154-223)||(43356933-43357002)
chr1 (177-238)||(48494308-48494369)
chr1 (175-243)||(21507874-21507942)
chr1 (173-217)||(11653101-11653145)
[»] chr2 (4 HSPs)
chr2 (154-238)||(2717815-2717899)
chr2 (149-223)||(28545003-28545077)
chr2 (179-243)||(42729592-42729656)
chr2 (173-217)||(23461236-23461280)
[»] chr3 (12 HSPs)
chr3 (149-243)||(46495488-46495582)
chr3 (153-243)||(55425633-55425723)
chr3 (154-243)||(31280968-31281057)
chr3 (151-243)||(21515257-21515348)
chr3 (154-219)||(46496879-46496944)
chr3 (154-219)||(31282590-31282655)
chr3 (87-126)||(7914661-7914700)
chr3 (179-243)||(141935-141999)
chr3 (153-211)||(17029657-17029715)
chr3 (177-238)||(26151129-26151190)
chr3 (154-219)||(55423392-55423457)
chr3 (179-243)||(143207-143271)
[»] chr4 (5 HSPs)
chr4 (154-243)||(28655569-28655658)
chr4 (154-225)||(11243800-11243871)
chr4 (154-235)||(28657185-28657266)
chr4 (154-239)||(20827558-20827643)
chr4 (154-219)||(20825435-20825499)
[»] scaffold0176 (2 HSPs)
scaffold0176 (153-239)||(16037-16123)
scaffold0176 (146-206)||(19230-19290)
[»] chr8 (3 HSPs)
chr8 (179-239)||(24853360-24853420)
chr8 (177-224)||(3138908-3138955)
chr8 (173-217)||(23152498-23152542)
[»] chr7 (4 HSPs)
chr7 (177-223)||(44553221-44553267)
chr7 (179-239)||(7354527-7354587)
chr7 (179-239)||(44554799-44554859)
chr7 (173-213)||(19069769-19069809)
[»] chr6 (1 HSPs)
chr6 (173-218)||(31740329-31740374)
[»] chr5 (1 HSPs)
chr5 (154-219)||(39881614-39881679)
[»] scaffold0148 (1 HSPs)
scaffold0148 (179-219)||(15903-15943)
[»] scaffold0024 (1 HSPs)
scaffold0024 (179-219)||(33626-33666)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 3e-79; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 87 - 289
Target Start/End: Original strand, 43356770 - 43356972
Alignment:
Q  87 atcacacatatttcatgctttatttccttagccttctcttatttccaagagtccatattcttattttggcttaattacataaataatccttcaacttatt 186  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||  ||||||||||||||    
T  43356770 atcacacatatttcatgctttatttccttagccttctcttatttacaagagtccatattcttattttgacttaattacataaatggtccttcaacttatt 43356869  T
Q  187 tgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctcatgtatcccaaannnnnnnagagttaatggaccaaatcaaaaacaaca 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||       | |||||| ||||||||||||||||||||    
T  43356870 tgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctcgtgtatcccgaaaaaatttaaagttaagggaccaaatcaaaaacaaca 43356969  T
Q  287 aat 289  Q
    |||    
T  43356970 aat 43356972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 2628382 - 2628317
Alignment:
Q  154 ggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaa 219  Q
    |||||||||  ||||||  ||||| |||||||||||||||||||||||||||||||||||||||||    
T  2628382 ggcttaattttataaatggtcctttaacttatttgttgttttcaatttggtcccttaactctaaaa 2628317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 156 - 243
Target Start/End: Original strand, 13875104 - 13875191
Alignment:
Q  156 cttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctcatgta 243  Q
    |||||||| ||||||  ||| |||||||||||||||||||| ||||| |||||||||| ||||||||||   |||| |||||||||||    
T  13875104 cttaattatataaatggtccctcaacttatttgttgttttcgatttgatcccttaactttaaaattttccaatttgatccctcatgta 13875191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 48492752 - 48492812
Alignment:
Q  179 aacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctca 239  Q
    ||||||||||||||||||| ||||||||| ||||| ||||||||||  |||||||||||||    
T  48492752 aacttatttgttgttttcattttggtcccataactttaaaattttcctttttggtccctca 48492812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 43357002 - 43356933
Alignment:
Q  154 ggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaatttt 223  Q
    |||||||||| ||||||  ||| |||||||||||||||||||  |||||||||||||||| |||| ||||    
T  43357002 ggcttaattatataaatcgtccctcaacttatttgttgtttttgatttggtcccttaactttaaattttt 43356933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 48494369 - 48494308
Alignment:
Q  177 tcaacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctc 238  Q
    ||||||||||||||||||||||||||||| | |||||||||| |||||   |||||||||||    
T  48494369 tcaacttatttgttgttttcaatttggtctcataactctaaatttttccaatttggtccctc 48494308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 243
Target Start/End: Complemental strand, 21507942 - 21507874
Alignment:
Q  175 cttcaacttatttgttgttttcaatttggtcccttaactctaaaa-ttttctgttttggtccctcatgta 243  Q
    |||||||||||||||  |||| |||||| |||| ||||||||||| ||||||| |||||||| |||||||    
T  21507942 cttcaacttatttgtcatttttaatttgatcccataactctaaaacttttctg-tttggtccttcatgta 21507874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 11653145 - 11653101
Alignment:
Q  173 tccttcaacttatttgttgttttcaatttggtcccttaactctaa 217  Q
    ||||| ||||||||| ||| ||||| |||||||||||||||||||    
T  11653145 tcctttaacttattttttggtttcattttggtcccttaactctaa 11653101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 2717899 - 2717815
Alignment:
Q  154 ggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctc 238  Q
    ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||    
T  2717899 ggcttaattacataaatgatcccttaacttatttgttgttttcaatttggtcccttaactctaaaattttccctttcggtccctc 2717815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 28545077 - 28545003
Alignment:
Q  149 attttggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaatttt 223  Q
    |||| |||||||||||||||||  ||| | || ||||||||||||||| ||||||||||| ||||||||| ||||    
T  28545077 atttaggcttaattacataaattgtcccttaatttatttgttgttttcgatttggtccctcaactctaaattttt 28545003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 42729592 - 42729656
Alignment:
Q  179 aacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctcatgta 243  Q
    |||||| |||||||||||| ||||||||| ||| | |||||||||| | ||| ||||||||||||    
T  42729592 aacttaattgttgttttcattttggtcccataaatataaaattttccggtttagtccctcatgta 42729656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 23461236 - 23461280
Alignment:
Q  173 tccttcaacttatttgttgttttcaatttggtcccttaactctaa 217  Q
    ||||| ||||||||| ||| ||||| |||||||||||||||||||    
T  23461236 tcctttaacttattttttggtttcattttggtcccttaactctaa 23461280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 46495488 - 46495582
Alignment:
Q  149 attttggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctcatgta 243  Q
    |||| |||||||||||||||||  ||| |||||||||||||||||||| |||||||||||||||| |||| |||| |  ||||||||||||||||    
T  46495488 atttgggcttaattacataaattgtccctcaacttatttgttgttttcgatttggtcccttaactttaaatttttttaatttggtccctcatgta 46495582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 55425723 - 55425633
Alignment:
Q  153 tggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctcatgta 243  Q
    ||||||||||||||||||  ||| |||||||||||||||||||| || ||||||||||| |||||| |||||  |||||||||||||||||    
T  55425723 tggcttaattacataaatggtccctcaacttatttgttgttttcgatatggtcccttaattctaaacttttccattttggtccctcatgta 55425633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 31280968 - 31281057
Alignment:
Q  154 ggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctcatgta 243  Q
    |||||||||||||||||  ||| |||||||||||||||||||| || ||||||||||| |||||| |||||  |||||||||||||||||    
T  31280968 ggcttaattacataaatggtccctcaacttatttgttgttttcgatatggtcccttaattctaaacttttccattttggtccctcatgta 31281057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 21515257 - 21515348
Alignment:
Q  151 tttggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactct-aaaattttctgttttggtccctcatgta 243  Q
    |||||||||||||||||||| |||| | |||||||||||||||||| ||||||| |||||||||| |||| |||| | ||||||||||||||||    
T  21515257 tttggcttaattacataaatgatcccttaacttatttgttgttttcgatttggt-ccttaactctaaaaaatttccg-tttggtccctcatgta 21515348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 46496944 - 46496879
Alignment:
Q  154 ggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaa 219  Q
    |||||||||||||||||  ||| |||||||||||||||||||| |||||||||||||||| |||||    
T  46496944 ggcttaattacataaatggtccctcaacttatttgttgttttcgatttggtcccttaactttaaaa 46496879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 31282655 - 31282590
Alignment:
Q  154 ggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaa 219  Q
    |||||||||| ||||||  ||| |||||||||||||||||||| || ||||||||||| |||||||    
T  31282655 ggcttaattatataaatggtccctcaacttatttgttgttttcgatatggtcccttaattctaaaa 31282590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 7914661 - 7914700
Alignment:
Q  87 atcacacatatttcatgctttatttccttagccttctctt 126  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  7914661 atcacacatatttcatgctttatttccttaaccttctctt 7914700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 141935 - 141999
Alignment:
Q  179 aacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctcatgta 243  Q
    |||||| ||||||||||| |||||||||| |||||||||| |||||   |||||| |||||||||    
T  141935 aacttaattgttgttttcgatttggtcccataactctaaatttttcccgtttggtacctcatgta 141999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 211
Target Start/End: Original strand, 17029657 - 17029715
Alignment:
Q  153 tggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaa 211  Q
    ||||||||||||||||||  |||   |||||||||||| ||||| ||||||||||||||    
T  17029657 tggcttaattacataaatggtcccataacttatttgttcttttcgatttggtcccttaa 17029715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 238
Target Start/End: Original strand, 26151129 - 26151190
Alignment:
Q  177 tcaacttatttgttgttttcaatttggtcccttaactctaaaattt-tctgttttggtccctc 238  Q
    ||||||||||||||||||||||||||||| |  |||| |||||||| |||| |||||||||||    
T  26151129 tcaacttatttgttgttttcaatttggtctcaaaactttaaaatttctctg-tttggtccctc 26151190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 55423392 - 55423457
Alignment:
Q  154 ggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaa 219  Q
    |||||||||| ||||||  ||  |||||||||||||||||||| || ||||||||||  |||||||    
T  55423392 ggcttaattatataaatggtcactcaacttatttgttgttttcgatatggtcccttatttctaaaa 55423457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 143271 - 143207
Alignment:
Q  179 aacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctcatgta 243  Q
    |||||| ||||||||||| | |||||||| |||||||||| |||||   |||||| |||||||||    
T  143271 aacttaattgttgttttcgagttggtcccataactctaaatttttcccatttggtacctcatgta 143207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 28655569 - 28655658
Alignment:
Q  154 ggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctcatgta 243  Q
    |||||||||||||||||  ||| |||||||||||||||||||| || ||||||||||| | |||| |||||  |||||||||||||||||    
T  28655569 ggcttaattacataaatggtccctcaacttatttgttgttttcgatatggtcccttaattataaacttttccattttggtccctcatgta 28655658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 11243871 - 11243800
Alignment:
Q  154 ggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaattttct 225  Q
    |||| ||||||||||||  ||| |||||||||||||||||||  ||||||||||||||||||||||||||||    
T  11243871 ggctaaattacataaatggtccctcaacttatttgttgttttagatttggtcccttaactctaaaattttct 11243800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 235
Target Start/End: Complemental strand, 28657266 - 28657185
Alignment:
Q  154 ggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtcc 235  Q
    |||||||||| ||||||  ||| |||| ||||||||||||||| || ||||||||||| ||||||||||||  |||||||||    
T  28657266 ggcttaattatataaatggtccctcaatttatttgttgttttcgatatggtcccttaattctaaaattttccattttggtcc 28657185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 20827643 - 20827558
Alignment:
Q  154 ggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctca 239  Q
    |||||||||||||||||  || || |||||||||||||||||  |||||| ||||||| | ||||||| || | ||||||||||||    
T  20827643 ggcttaattacataaatggtcttttaacttatttgttgtttttgatttggacccttaattttaaaattatccgatttggtccctca 20827558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 20825435 - 20825499
Alignment:
Q  154 ggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaa 219  Q
    |||||||||  ||||||  ||||| |||||||||||||||||| ||||||||| |||| |||||||    
T  20825435 ggcttaattgtataaatggtcctt-aacttatttgttgttttcgatttggtcctttaattctaaaa 20825499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 239
Target Start/End: Original strand, 16037 - 16123
Alignment:
Q  153 tggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctca 239  Q
    ||||||||||| ||||||  ||| | |||||||||||||||||| ||||| |||||||||| |||||||||||  ||||||||||||    
T  16037 tggcttaattatataaatggtcccttaacttatttgttgttttcgatttgatcccttaactttaaaattttcttgtttggtccctca 16123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 19290 - 19230
Alignment:
Q  146 cttattttggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcc 206  Q
    ||||||| ||||||||||||||| || |||||   |||||||||||||||||||| |||||    
T  19290 cttatttaggcttaattacataattagtccttactcttatttgttgttttcaattgggtcc 19230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 24853420 - 24853360
Alignment:
Q  179 aacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctca 239  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||   ||||||||||||    
T  24853420 aacttatttgttgttttcaatttggtcccataactctaaatttttcctatttggtccctca 24853360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 3138955 - 3138908
Alignment:
Q  177 tcaacttatttgttgttttcaatttggtcccttaactctaaaattttc 224  Q
    ||||||||||||||||||||| ||||||| | |||||||||| |||||    
T  3138955 tcaacttatttgttgttttcattttggtctcataactctaaatttttc 3138908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 23152542 - 23152498
Alignment:
Q  173 tccttcaacttatttgttgttttcaatttggtcccttaactctaa 217  Q
    ||||| ||||||||| ||| ||||| |||||||||||||||||||    
T  23152542 tcctttaacttattttttggtttcactttggtcccttaactctaa 23152498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 223
Target Start/End: Original strand, 44553221 - 44553267
Alignment:
Q  177 tcaacttatttgttgttttcaatttggtcccttaactctaaaatttt 223  Q
    ||||||||||||||||||||||||||||| | |||||||||| ||||    
T  44553221 tcaacttatttgttgttttcaatttggtctcataactctaaattttt 44553267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 7354527 - 7354587
Alignment:
Q  179 aacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctca 239  Q
    ||||||||| ||||||| ||||||||| | |||||||||| |||||  |||||||||||||    
T  7354527 aacttatttcttgtttttaatttggtctcataactctaaatttttcctttttggtccctca 7354587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 44554859 - 44554799
Alignment:
Q  179 aacttatttgttgttttcaatttggtcccttaactctaaaattttctgttttggtccctca 239  Q
    ||||||||||||||||||| ||||||||| ||||| |||| ||||   |||||||||||||    
T  44554859 aacttatttgttgttttcattttggtcccataactttaaattttttctttttggtccctca 44554799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 19069769 - 19069809
Alignment:
Q  173 tccttcaacttatttgttgttttcaatttggtcccttaact 213  Q
    ||||| ||||||||||||| ||||| |||||||||||||||    
T  19069769 tcctttaacttatttgttggtttcattttggtcccttaact 19069809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 31740374 - 31740329
Alignment:
Q  173 tccttcaacttatttgttgttttcaatttggtcccttaactctaaa 218  Q
    ||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  31740374 tcctttaacttattttttgttttcaatttggtcccttaactataaa 31740329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 39881679 - 39881614
Alignment:
Q  154 ggcttaattacataaataatccttcaacttatttgttgttttcaatttggtcccttaactctaaaa 219  Q
    ||||||||||||||| || |||   |||||||||||||||||| ||||||| ||||| || |||||    
T  39881679 ggcttaattacataattagtcccctaacttatttgttgttttcgatttggtaccttatctttaaaa 39881614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 15943 - 15903
Alignment:
Q  179 aacttatttgttgttttcaatttggtcccttaactctaaaa 219  Q
    ||||||||||||||||||| ||||||||| |||||| ||||    
T  15943 aacttatttgttgttttcattttggtcccataactcaaaaa 15903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 33666 - 33626
Alignment:
Q  179 aacttatttgttgttttcaatttggtcccttaactctaaaa 219  Q
    ||||||||| |||| |||||||||||| |||||||||||||    
T  33666 aacttattttttgtattcaatttggtctcttaactctaaaa 33626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University